Oryza sativa japonica (Japanese rice) (RefSeq): 107276265 Help Entry 107276265         CDS       T01015                                  Name (RefSeq) tyrosine--tRNA ligase 1, cytoplasmic-like isoform X1   KO K01866   tyrosyl-tRNA synthetase [EC:6.1.1.1] Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa00970   Aminoacyl-tRNA biosynthesis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    00970 Aminoacyl-tRNA biosynthesis     107276265  09180 Brite Hierarchies   09181 Protein families: metabolism    01007 Amino acid related enzymes [BR:osa01007]     107276265   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:osa03016]     107276265    03029 Mitochondrial biogenesis [BR:osa03029]     107276265 Enzymes [BR:osa01000]  6. Ligases   6.1  Forming carbon-oxygen bonds    6.1.1  Ligases forming aminoacyl-tRNA and related compounds     6.1.1.1  tyrosine---tRNA ligase      107276265 Amino acid related enzymes [BR:osa01007]  Aminoacyl-tRNA synthetase   Class I (A)    107276265 Transfer RNA biogenesis [BR:osa03016]  Eukaryotic type   Aminoacyl-tRNA synthetases (AARSs)    Other AARSs     107276265  Prokaryotic type     107276265 Mitochondrial biogenesis [BR:osa03029]  Mitochondrial DNA transcription, translation, and replication factors   Mitochondrial transcription and translation factors    Other mitochondrial DNA transcription and translation factors     107276265 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  tRNA-synt_1b Motif Other DBs NCBI-GeneID:  107276265 NCBI-ProteinID:  XP_015635787 LinkDB All DBs Position 4:complement(34744597..34751385) Genome browser AA seq 369 aa AA seqDB search MEMGFDEKFALLRSIAEECICEDELRVLLKKKPNPICCVWFEPTSMMGIEQGIMKTIYVN KMVRAGCTVKILIADWFPQRNPRFTCNLNKIQAIIRYNIMMWKAVGMHLDKVEIIWFSDE LNHHAVDYWPFAMDVSRKYTMKRMASYCKYVEPYGPGILPAAQIIYPCMLVSAVLCHKLQ ADIWLFSMDLRDIVMLTRDYCEDTNRGNIPTIFLHSVLPNLLENPEFQNRRNPGRTIFML DDEDDIEEKISCAFCPSRVVACNPCLEYIKSVVLPWFGKFEVVQKEGNGSNKTYSSMKEL IADYESGDLDSFDVKLALGKAINDILELVSEFFRSNEEAQAQIVPHRLQDEIGADIQKIQ LQNEEMSGH NT seq 1110 nt NT seq  +upstreamnt  +downstreamnt atggagatgggatttgatgagaaatttgcacttctgaggagcattgcggaggagtgcata tgcgaggatgagctacgcgtattactgaagaagaagcctaatcccatctgctgtgtttgg tttgagccaacctccatgatgggcatagagcagggtattatgaagacaatctatgtcaac aaaatggttagagctggctgtacagttaaaatattgatagcagattggtttccgcagcgg aaccctagattcacctgtaacctaaacaaaatacaggctattatccgctacaatatcatg atgtggaaggcagttggcatgcaccttgacaaagtagagatcatatggttttctgatgaa ttgaatcatcacgctgtcgactactggccatttgctatggatgtttccagaaaatacacc atgaaaagaatggcaagttattgtaagtatgtggaaccatatgggccaggaatacttcct gctgcccagataatttacccttgcatgctggtttctgctgtattatgccacaagttgcag gcagacatatggctattcagcatggatctgcgagacattgtcatgctaactagagattat tgtgaagatacaaataggggaaacataccaactattttcctgcactctgtgctacctaat ttactagaaaaccccgaattccagaatagaagaaatcctggacggactatcttcatgcta gatgatgaggatgatatagaagaaaaaataagttgtgctttctgcccttcgagagtagta gcatgcaacccatgtttggagtatataaaatctgttgtccttccttggtttgggaagttt gaggtcgttcagaaggaagggaatggtagcaacaagacatattcaagcatgaaggaactt attgctgattatgaaagtggcgatcttgactcttttgatgtcaagttggcactgggaaaa gcaataaatgacatattagagcttgtcagcgagtttttccgtagcaacgaggaagctcaa gctcaaattgttccccacaggttacaggatgaaattggggcagatatccagaagatccaa ttgcagaacgaggagatgtctggtcattga

Oryza sativa japonica (Japanese rice) (RefSeq): 4324476 Help Entry 4324476           CDS       T01015                                  Name (RefSeq) tyrosine--tRNA ligase, chloroplastic/mitochondrial   KO K01866   tyrosyl-tRNA synthetase [EC:6.1.1.1] Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa00970   Aminoacyl-tRNA biosynthesis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    00970 Aminoacyl-tRNA biosynthesis     4324476  09180 Brite Hierarchies   09181 Protein families: metabolism    01007 Amino acid related enzymes [BR:osa01007]     4324476   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:osa03016]     4324476    03029 Mitochondrial biogenesis [BR:osa03029]     4324476 Enzymes [BR:osa01000]  6. Ligases   6.1  Forming carbon-oxygen bonds    6.1.1  Ligases forming aminoacyl-tRNA and related compounds     6.1.1.1  tyrosine---tRNA ligase      4324476 Amino acid related enzymes [BR:osa01007]  Aminoacyl-tRNA synthetase   Class I (A)    4324476 Transfer RNA biogenesis [BR:osa03016]  Eukaryotic type   Aminoacyl-tRNA synthetases (AARSs)    Other AARSs     4324476  Prokaryotic type     4324476 Mitochondrial biogenesis [BR:osa03029]  Mitochondrial DNA transcription, translation, and replication factors   Mitochondrial transcription and translation factors    Other mitochondrial DNA transcription and translation factors     4324476 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  tRNA-synt_1b S4 TyrRSs_C Motif Other DBs NCBI-GeneID:  4324476 NCBI-ProteinID:  XP_015622268 UniProt:  A0A0P0V2Y9 Q943W5 LinkDB All DBs Position 1:17301972..17307368 Genome browser AA seq 497 aa AA seqDB search MASIAMAASLRTFLRPHRCRLLLRQSRSLSASAAPAGAAAASTVIRRSVVEVLRERGLVE ATTSESLGSASASPRELKAYCGFDPTAESLHLGNLLGLVVLSWFRRCGHNAVALVGGATG RVGDPSGKSAERPELDLAAVETNSNAIKSLIGQILDRAPEPSQHSQSGKNLNLEQNEQAL VNSGEKMGSFQILDNYDWWKDITLLDFLKEVGRFARVGTMIAKESVKKRLMSEDGMSYTE FTYQLLQGYDFLYMFRNMGVNVQIGGSDQWGNITAGTELIRKILQVEGAHGLTFPLLLKS DGTKFGKTEDGAIWLSPKMLSPYKFYQYFFSVPDIDVIRFMKILTFMSLDEIQELEESMK KPGYVPNTIQRRLAEEVTRFVHGEEGLEEALKATEALRPGAQTQLDSQTIEGIADDVPSC FLPYGQVLKSPLVDLAVSTGLLASKSAVRRLIKQGGLYLNNIRIDSEDKLVEEGDVVDGK VLLLSAGKKNKMVVRIS NT seq 1494 nt NT seq  +upstreamnt  +downstreamnt atggcttccatcgctatggctgcctcgttgcgaaccttcctccgccctcaccgttgccgt ctcctcctccgccagagccgcagcctctccgccagcgccgccccggccggtgccgccgcc gcatccacggttatccggcgcagcgtagtggaggtgctccgggagcgggggctcgtggag gccaccacttctgagtctctggggtcggcttcagcgagccctagggagctcaaggcgtac tgcggcttcgaccccacggcggagagcctccacctcgggaacctcctcgggctcgtcgtg ctctcctggttccgccgctgcggtcacaacgccgtcgcgctcgtcggcggcgccaccggc cgtgtcggtgacccctctggaaagagcgccgagcggcccgagctcgacctcgccgccgtc gagaccaactccaacgctatcaaatcgctcatcggccagatccttgaccgtgcacccgag ccctcccaacattcgcaatccggtaaaaacttgaacttggagcaaaatgagcaggctttg gtcaattcgggagaaaagatgggttcttttcagatccttgataactatgactggtggaag gacatcacgctgctggatttcctcaaggaggtggggagattcgctcgtgttgggacgatg atagccaaggagagtgtcaagaagcggcttatgtccgaggacggaatgagctacactgag ttcacctaccagctgttgcagggctatgacttcctgtacatgttccgcaatatgggtgtt aatgtgcagattggaggaagtgatcagtggggaaacatcacagcggggactgagttaatt cggaagattttacaggttgagggggcacacggcctgacattcccactactgctgaagagt gatgggacgaagtttggcaagacggaggatggagcaatctggctttcgcccaagatgttg tcaccatacaaattctatcagtacttcttctcagtgccagatattgatgtcataaggttt atgaagatactgacattcatgagcctggatgagattcaggagctggaagagtcgatgaag aagcctggctatgtgccgaacacaattcagaggaggcttgcagaagaggtcacacgtttt gtgcatggtgaggagggattggaggaagcgttgaaagccacggaagccttacggcctggg gcacagactcagttggattcacaaacaattgaggggatagcagatgacgtaccatcatgc tttttgccatatggccaagttttgaagtctcccctggttgatctagcagtctccacaggt ttgcttgctagcaaatcagcggttaggcggcttattaagcaaggggggctatacttaaat aacataagaattgatagcgaggataagttggttgaggaaggtgatgtagttgatgggaaa gtgctgttgctatctgctggaaagaagaacaagatggttgtgaggatatcttga

Oryza sativa japonica (Japanese rice) (RefSeq): 4330562 Help Entry 4330562           CDS       T01015                                  Name (RefSeq) tyrosine--tRNA ligase 1, cytoplasmic isoform X1   KO K01866   tyrosyl-tRNA synthetase [EC:6.1.1.1] Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa00970   Aminoacyl-tRNA biosynthesis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    00970 Aminoacyl-tRNA biosynthesis     4330562  09180 Brite Hierarchies   09181 Protein families: metabolism    01007 Amino acid related enzymes [BR:osa01007]     4330562   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:osa03016]     4330562    03029 Mitochondrial biogenesis [BR:osa03029]     4330562 Enzymes [BR:osa01000]  6. Ligases   6.1  Forming carbon-oxygen bonds    6.1.1  Ligases forming aminoacyl-tRNA and related compounds     6.1.1.1  tyrosine---tRNA ligase      4330562 Amino acid related enzymes [BR:osa01007]  Aminoacyl-tRNA synthetase   Class I (A)    4330562 Transfer RNA biogenesis [BR:osa03016]  Eukaryotic type   Aminoacyl-tRNA synthetases (AARSs)    Other AARSs     4330562  Prokaryotic type     4330562 Mitochondrial biogenesis [BR:osa03029]  Mitochondrial DNA transcription, translation, and replication factors   Mitochondrial transcription and translation factors    Other mitochondrial DNA transcription and translation factors     4330562 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  tRNA-synt_1b Motif Other DBs NCBI-GeneID:  4330562 NCBI-ProteinID:  XP_015623955 LinkDB All DBs Position 2:complement(29958705..29979210) Genome browser AA seq 382 aa AA seqDB search MDNLDDVAFDINEDNVVINSDEKFAVLRSIGDECIYEDELLGLLKNKPSPTCCVWFEPST NMDIEQGIMKTIYVNRMVKAGCAVKIVTADWFLQRHYKIGNNLSKIRNIGYLNIEMWKAA GMDLDRVELVWLSDELNLHAVDYWPVAMDVSRRYTMTRIARIFWSNAEHGPQILPAAEII YPCMQVASILCEKTNIWLFSMDQRDIIMLTRDYCENINWVNKPTILLHDALPNLLEDPEY VDLRDRGRTIFMHDEEHTLNSKIQRAFCPPKVVVHNPCLEYIKYIILPWFGNLEVVQNEW NGSTKTFVSMEELSVDYERGYLNSADVKMALEKAINNILEPVRDYFSGNTKAQALIMACQ LQNEITGDVLKIQMQNKEMRHH NT seq 1149 nt NT seq  +upstreamnt  +downstreamnt atggataacttagatgatgttgccttcgacatcaacgaggataacgtggtgattaattct gatgagaagtttgcagtactgaggagcataggagatgaatgcatctatgaggatgaactc ctcggcctgctgaagaataagcccagtcctacatgctgtgtttggtttgagccatccacc aatatggacatagagcaggggattatgaagacaatctatgtcaacaggatggtcaaagct ggttgtgcagtcaaaattgtgacggcagattggtttttgcagcgtcattataagattggc aacaacctaagtaaaatacggaacattggctatctcaatattgagatgtggaaagcagct ggcatggaccttgacagggtagagcttgtgtggttgtcagatgaattgaatctccatgca gttgattactggccagttgccatggatgtctccagaagatataccatgacaagaattgca aggatcttttggagtaatgcagaacatgggccacaaatacttcctgctgctgagataatt tatccttgcatgcaggttgcttctatattatgcgagaagacgaacatatggctattcagc atggatcaacgagatattatcatgctcactagagattattgtgaaaacataaactgggtg aacaaaccaactattttgctgcatgatgctctacctaatttactagaagatcctgaatat gtggacttgcgagatcgtggacgaactatcttcatgcatgatgaggagcacactttaaat tcaaaaatacagagggcattctgtcctccaaaagtagtggtacacaacccatgtctggag tatatcaaatatatcatcctaccttggtttgggaacttggaggtagtccagaatgaatgg aatggtagtaccaagacatttgtaagcatggaagaacttagtgttgattatgaaagaggt tatctcaattctgctgatgttaagatggctcttgagaaagcaataaacaacattctagag cctgtccgtgactacttcagtggtaacactaaagcccaagctctaattatggcctgccag ttgcagaatgaaattactggagatgtcctgaagattcaaatgcagaacaaagagatgcgc catcattga

Oryza sativa japonica (Japanese rice) (RefSeq): 4344270 Help Entry 4344270           CDS       T01015                                  Name (RefSeq) tyrosine--tRNA ligase 1, cytoplasmic isoform X1   KO K01866   tyrosyl-tRNA synthetase [EC:6.1.1.1] Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa00970   Aminoacyl-tRNA biosynthesis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    00970 Aminoacyl-tRNA biosynthesis     4344270  09180 Brite Hierarchies   09181 Protein families: metabolism    01007 Amino acid related enzymes [BR:osa01007]     4344270   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:osa03016]     4344270    03029 Mitochondrial biogenesis [BR:osa03029]     4344270 Enzymes [BR:osa01000]  6. Ligases   6.1  Forming carbon-oxygen bonds    6.1.1  Ligases forming aminoacyl-tRNA and related compounds     6.1.1.1  tyrosine---tRNA ligase      4344270 Amino acid related enzymes [BR:osa01007]  Aminoacyl-tRNA synthetase   Class I (A)    4344270 Transfer RNA biogenesis [BR:osa03016]  Eukaryotic type   Aminoacyl-tRNA synthetases (AARSs)    Other AARSs     4344270  Prokaryotic type     4344270 Mitochondrial biogenesis [BR:osa03029]  Mitochondrial DNA transcription, translation, and replication factors   Mitochondrial transcription and translation factors    Other mitochondrial DNA transcription and translation factors     4344270 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  tRNA-synt_1b Motif Other DBs NCBI-GeneID:  4344270 NCBI-ProteinID:  XP_015647518 LinkDB All DBs Position 7:complement(28584743..28593361) Genome browser AA seq 424 aa AA seqDB search MLARAFGLVGKTWKRTPTMSVEASASPRRRSQMPQQQLCHLHGSTPSQRQKFPEEQLPGD TVEGSFDLRFAALKSIGEDRVNDRELKLLLKKKHAPICYVWCDPCPWMHISQGIMKTLNI NKMVESGFKVKILMADWFSQMNSEISGNLNKMRTVGRYNIEMWKATGMALDKVDLVWLSD EIRQHGDEYWPIVMDIARTNSVRRIKSTCRSSYYCLPSRFCGSRNSYAIGKLNVDEIFYI CLQCASILFQKADIWLLGMEQHDANLLARQYYKHFKKKNKAIAVLDNMLPNLLQYPQMEN RRHPAWAIFMEDDKEDICFKMEKAFCPPKLAEGNPCLEYIKYIILPWFGMFEVVQKKGNG GKKTFLSMEELTADYESGALHPADVKLALEKSLNEILQPVRDHFGRNGEAKDLVEAIGEC YGAD NT seq 1275 nt NT seq  +upstreamnt  +downstreamnt atgctagcgcgggcgtttggcctcgtgggcaaaacatggaagcgaacgccgactatgtcc gtcgaggcttccgcctcgccgcgccgccgctcccagatgccacagcagcagctttgtcat ctccacggcagcacgccgtcacaacggcaaaagttccccgaagaacagctcccgggggat actgttgaggggagttttgacctgaggtttgcagcactgaagagcattggggaggatcgg gtcaacgatcgtgagcttaagttactgctaaagaagaaacatgcccccatttgttatgtt tggtgtgatccatgcccctggatgcacatttctcaggggatcatgaagacactcaatatt aataaaatggttgaatctggtttcaaagttaaaatcttaatggcagactggttttcccag atgaacagtgagattagtggcaatctaaataagatgcggactgttggcaggtacaatatt gagatgtggaaagcaactggcatggctcttgataaagtagatctagtctggttgtcagat gaaatacgtcaacatggtgatgagtactggccaattgtcatggatattgcaaggacaaac agtgtgcgtagaataaaaagtacatgcaggtcctcttattactgtttacctagcagattt tgtgggagtagaaattcttatgcgattggaaaattaaatgttgatgagattttttacatt tgcttgcagtgtgctagcatattatttcagaaggcagacatatggctgttgggaatggaa cagcatgatgccaacttattagctagacaatattataagcatttcaaaaagaagaataag gcaattgctgttttggacaatatgcttcctaatttattacaataccctcaaatggagaac aggaggcatccagcttgggctatcttcatggaagatgataaggaggatatatgttttaaa atggaaaaagctttctgccctccaaaactagcagaaggcaatccatgtttggagtacata aaatatatcatcttgccttggtttggaatgtttgaggtggtccagaagaaagggaatggt ggcaaaaagacttttctgagcatggaggaacttacagctgattatgaaagtggcgctctg catcctgctgatgtgaagctggcccttgaaaagtcattgaacgagatattgcagcctgtt cgtgatcactttggaaggaatggtgaagcaaaggatctagtggaagctatcggggaatgc tacggtgctgactga

Oryza sativa japonica (Japanese rice) (RefSeq): 4344663 Help Entry 4344663           CDS       T01015                                  Name (RefSeq) tyrosine--tRNA ligase 1, cytoplasmic   KO K01866   tyrosyl-tRNA synthetase [EC:6.1.1.1] Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa00970   Aminoacyl-tRNA biosynthesis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    00970 Aminoacyl-tRNA biosynthesis     4344663  09180 Brite Hierarchies   09181 Protein families: metabolism    01007 Amino acid related enzymes [BR:osa01007]     4344663   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:osa03016]     4344663    03029 Mitochondrial biogenesis [BR:osa03029]     4344663 Enzymes [BR:osa01000]  6. Ligases   6.1  Forming carbon-oxygen bonds    6.1.1  Ligases forming aminoacyl-tRNA and related compounds     6.1.1.1  tyrosine---tRNA ligase      4344663 Amino acid related enzymes [BR:osa01007]  Aminoacyl-tRNA synthetase   Class I (A)    4344663 Transfer RNA biogenesis [BR:osa03016]  Eukaryotic type   Aminoacyl-tRNA synthetases (AARSs)    Other AARSs     4344663  Prokaryotic type     4344663 Mitochondrial biogenesis [BR:osa03029]  Mitochondrial DNA transcription, translation, and replication factors   Mitochondrial transcription and translation factors    Other mitochondrial DNA transcription and translation factors     4344663 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  tRNA-synt_1b Motif Other DBs NCBI-GeneID:  4344663 NCBI-ProteinID:  XP_015648441 UniProt:  B9FZ31 Q84PX0 LinkDB All DBs Position 8:2924198..2928514 Genome browser AA seq 394 aa AA seqDB search MDPSQPSGSSADASASSSSSSSSSAVENLAAGMAAMSLQDRFELLRGIGEECIQEDELMN LLQKKPVPICYDGFEPSGRMHIAQGIVKTINVNKMVRAGCKVKIWIADWFAQLNNKMGGD IKKIQTVGRYMIEIWRAAGMNLDGVEFLWSSEEINKRANEYWPLVMDIARKNNVKRIMRC CQIMGRNDSDELTAAQIFYPCMQCADIFFLKADICQLGMDQRKVNMLAREYCDDIKRRNK PIILSHHMLPGFKEGQEKMSKSDPSSAIFMEDDEAQVNLKIKQAFCPPNIVDGNPCLEYI KYIVFPWFETFEVVRKEENGGNKTFANMNELIADYESGALHPADVKPALAKAINQILQPI RDHFKNNSEAKVLLNTVKNYKVKTEDTSSSPQAS NT seq 1185 nt NT seq  +upstreamnt  +downstreamnt atggacccctcgcagccgtccgggagctccgccgacgcctcggcgtcctcctcctcctcc tcctcctcctccgccgtggagaatctcgccgcggggatggcggccatgagcctccaggat cggttcgagttgctgcgggggatcggcgaggagtgcatccaggaggacgagctcatgaac ctgctgcagaagaagcccgtccccatctgctacgacggtttcgagccctccggccgcatg cacattgctcagggcattgtgaagacaatcaatgttaacaagatggtcagagctggatgc aaagtgaaaatttggatagcagactggtttgctcagctaaacaacaagatggggggtgat ataaaaaaaatacagactgtgggacgctacatgattgagatttggagagcggctggtatg aatcttgatggtgtggaattcttgtggtcctcagaggaaatcaataagcgtgcaaatgaa tattggccacttgtaatggacattgctcgtaaaaataatgtcaaaagaataatgagatgt tgtcagattatgggtcggaatgattcggatgagttgactgctgcccagatcttctatcct tgcatgcagtgtgctgatatatttttcttaaaggcagacatttgccagttgggcatggac caaaggaaggtcaatatgctagccagggagtactgtgatgacatcaaaaggagaaacaaa ccaattattctgtcacatcatatgctccctggttttaaggagggccaagaaaagatgtca aagagtgatccatcctcagccatttttatggaagatgacgaggctcaggtaaatttgaag ataaaacaagcattttgccctcccaacattgttgatggcaatccatgcttggagtacatc aagtacattgttttcccttggtttgaaacgtttgaggtggttcggaaggaagaaaatggc ggtaacaagacatttgccaacatgaatgaactcatcgctgattatgagagtggtgctttg catcctgctgatgttaaaccagctcttgcaaaagcgataaaccaaatattgcagcctatc cgtgaccacttcaaaaacaacagtgaagcaaaagttctgctcaacactgttaagaattac aaagtaaaaacggaggatactagttcaagccctcaagcatcttaa

Oryza sativa japonica (Japanese rice) (RefSeq): 4344859 Help Entry 4344859           CDS       T01015                                  Name (RefSeq) tyrosine--tRNA ligase 1, cytoplasmic isoform X1   KO K01866   tyrosyl-tRNA synthetase [EC:6.1.1.1] Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa00970   Aminoacyl-tRNA biosynthesis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    00970 Aminoacyl-tRNA biosynthesis     4344859  09180 Brite Hierarchies   09181 Protein families: metabolism    01007 Amino acid related enzymes [BR:osa01007]     4344859   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:osa03016]     4344859    03029 Mitochondrial biogenesis [BR:osa03029]     4344859 Enzymes [BR:osa01000]  6. Ligases   6.1  Forming carbon-oxygen bonds    6.1.1  Ligases forming aminoacyl-tRNA and related compounds     6.1.1.1  tyrosine---tRNA ligase      4344859 Amino acid related enzymes [BR:osa01007]  Aminoacyl-tRNA synthetase   Class I (A)    4344859 Transfer RNA biogenesis [BR:osa03016]  Eukaryotic type   Aminoacyl-tRNA synthetases (AARSs)    Other AARSs     4344859  Prokaryotic type     4344859 Mitochondrial biogenesis [BR:osa03029]  Mitochondrial DNA transcription, translation, and replication factors   Mitochondrial transcription and translation factors    Other mitochondrial DNA transcription and translation factors     4344859 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  tRNA-synt_1b Motif Other DBs NCBI-GeneID:  4344859 NCBI-ProteinID:  XP_015649123 LinkDB All DBs Position 8:complement(5378757..5384249) Genome browser AA seq 367 aa AA seqDB search MAGDADSGGLPGGEAAEEMGMGGEEERVATLLGIAEECDTEEELRLLLRGNPHPVCYDSF LPCDRMTIAQGVLKAIHVRKMVEAGCRVKIWIDDWSAFLNNKLGGDMEKIQTVGRYMIEV WKSIGMNHDGVEFLCSSAEINSRADEYWPRVMGISTHRKIGVVRELRECKKPTAQFFNPC MQCAGIFFLEADICQMGMDQHEVNKLATTYSDNRQEKKPIILSHYLLPGLKGQNKMSASD PASAIFMDDEKAEIDLKIKQAFCPPKIVKGNPCIEYIKYIIFPWFGKFEVVRKAKNGGNK TFMSVEELVMDYESGSLHPADVKPALKEAINQILKPVREHFENNKEAKFLRDTVKLSLQG YSEVNSE NT seq 1104 nt NT seq  +upstreamnt  +downstreamnt atggccggcgatgccgattccggtggcctcccggggggcgaggcggcggaggagatgggg atgggcggcgaggaggagagggttgcgacgctgctagggatcgcggaggagtgcgacacg gaggaggagctccggctgctgctgcgggggaatccccaccccgtctgctacgacagcttc ctgccctgcgaccgcatgaccattgcccagggtgttttgaaagcaatacatgtgagaaaa atggtagaagctggatgcagagtaaaaatctggatagatgattggtctgccttcctgaac aacaagctgggaggtgacatggaaaaaatccagactgttggccgctacatgatagaggtc tggaaatccattggtatgaaccatgatggggtagaatttctttgttcatcggctgagatc aatagtcgggcagatgaatattggccacgtgtcatgggtattagcacacaccgcaagatt ggagttgtgagggagctcagggaatgcaaaaagcctactgcccagttcttcaacccttgc atgcagtgtgctggcatattcttcctagaggcagacatttgtcagatgggcatggatcag catgaggtcaacaagctagcaacaacgtattctgataacagacaggaaaagaagccaatt attctgtcacactacttgctccctggcttgaaagggcagaacaagatgtctgctagtgat ccagcatcagccatcttcatggatgatgagaaggctgagatagatttaaagataaaacag gctttctgccctccaaagattgtcaagggaaatccatgtattgagtacataaaatacatc atttttccttggtttggcaaatttgaggtggtccggaaggctaaaaatggtggaaacaag acatttatgagcgtggaagaactagtcatggactatgagagtggttccttgcatcctgct gatgtaaagcctgctctgaaagaagcaataaaccaaatattgaaacctgtccgtgagcac tttgaaaacaacaaggaagccaaattcttgcgtgatacagttaagttatccttgcagggc tacagcgaggtcaatagtgaataa

Oryza sativa japonica (Japanese rice) (RefSeq): 9269094 Help Entry 9269094           CDS       T01015                                  Name (RefSeq) tyrosine--tRNA ligase 1, cytoplasmic isoform X1   KO K01866   tyrosyl-tRNA synthetase [EC:6.1.1.1] Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa00970   Aminoacyl-tRNA biosynthesis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    00970 Aminoacyl-tRNA biosynthesis     9269094  09180 Brite Hierarchies   09181 Protein families: metabolism    01007 Amino acid related enzymes [BR:osa01007]     9269094   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:osa03016]     9269094    03029 Mitochondrial biogenesis [BR:osa03029]     9269094 Enzymes [BR:osa01000]  6. Ligases   6.1  Forming carbon-oxygen bonds    6.1.1  Ligases forming aminoacyl-tRNA and related compounds     6.1.1.1  tyrosine---tRNA ligase      9269094 Amino acid related enzymes [BR:osa01007]  Aminoacyl-tRNA synthetase   Class I (A)    9269094 Transfer RNA biogenesis [BR:osa03016]  Eukaryotic type   Aminoacyl-tRNA synthetases (AARSs)    Other AARSs     9269094  Prokaryotic type     9269094 Mitochondrial biogenesis [BR:osa03029]  Mitochondrial DNA transcription, translation, and replication factors   Mitochondrial transcription and translation factors    Other mitochondrial DNA transcription and translation factors     9269094 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  tRNA-synt_1b Motif Other DBs NCBI-GeneID:  9269094 NCBI-ProteinID:  XP_015612872 LinkDB All DBs Position 1:37543771..37551359 Genome browser AA seq 441 aa AA seqDB search MIARAFGLVGKAWKRTPASTPPRRRSDLPALLRRLHSRSAQPEIFREERPHLQNNSGGAP PRLDLISEQNWSKQCYNVNTMTSADSAVDSIRDTVEGSFDQRFATLKSIGEDRVKDSELE LLLKKKSAPVCYVWCDPTPFMRISQGIITTLSVNKMVKSGYKVKILMADWIAQMNRNIGG NLSEMRTIGLYNIEMWKAAGMALDRVEIVWLSDEISRLADEYWPLAIDVARKTTVSIIKR CCGRDLIEEFTAADIFYLSFQCATILFQKVDIWLLGMDQHEANLLAREYCKRVKRRNKPV AVSHKKLPNLLQYPEEEHRRNPFLAIFMDDSTVDISRKIKHAFCPPKLAEGNPCLEYIKY IILPWYGKFEVVREKEDGGNKTFLSMEELTADYVSGVLHPGDMKLALANSLIKILQPVYD HFKSNAEAKKALQGIEKYYKI NT seq 1326 nt NT seq  +upstreamnt  +downstreamnt atgatagcgcgggcgtttggccttgtgggcaaagcatggaagcgaacaccggcctcgacg ccgccgcgccgccgctccgacttaccggcgctgcttcgtcgcctccacagcaggtcggca caaccggaaatattccgcgaagaacggccccacctacaaaataatagcggaggagctccg ccaaggctggacttaatctcagaacaaaactggagcaagcagtgctataatgtcaacact atgacttcagccgattctgccgtcgactctattagggatactgttgaggggagttttgat cagaggttcgcaacactaaagagcattggggaggaccgtgtcaaagacagcgagcttgag ttactgctaaagaagaaatctgcccccgtttgctatgtttggtgtgatcccacccccttt atgcgcatatcccaggggatcataacgactctttctgttaataagatggttaaatctggt tacaaagttaaaatcctaatggcagactggattgcccagatgaaccgtaatattggtggc aatctaagtgaaatgcggactattggcttgtacaatattgagatgtggaaagcagctggt atggcccttgatagggtagagatagtgtggttgtcagatgaaataagtcggcttgctgat gaatattggccacttgccatagatgttgcaagaaaaaccactgtgagtataataaaaagg tgttgtgggagagatctaattgaagaattcactgctgctgatatattttacctttctttt cagtgtgctaccatattatttcagaaggttgacatatggctcttgggcatggatcaacat gaggccaatttgttagctagagaatactgcaagcgtgtaaaaaggcggaacaagccagtt gcagtgtcacacaaaaagcttcctaatttattacaatatcctgaagaagaacataggagg aacccattcctagccatcttcatggatgattctacggttgatatcagtagaaaaataaaa catgctttctgccctccaaaattagcagaaggcaatccatgtttggagtacataaaatat atcatcttaccatggtatggaaagtttgaggtggttcgggagaaagaggatggtggtaac aagacgttcctgagcatggaggagcttactgctgattatgtaagtggggttctgcatcct ggtgacatgaagctggctctcgcaaattcattaatcaaaatattgcagccggtctatgat cacttcaaaagcaatgctgaagccaaaaaagcactgcaaggcattgagaaatactacaag atctaa

Oryza sativa japonica (Japanese rice) (RefSeq): 9271247 Help Entry 9271247           CDS       T01015                                  Name (RefSeq) tyrosine--tRNA ligase 1, cytoplasmic   KO K01866   tyrosyl-tRNA synthetase [EC:6.1.1.1] Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa00970   Aminoacyl-tRNA biosynthesis Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09122 Translation    00970 Aminoacyl-tRNA biosynthesis     9271247  09180 Brite Hierarchies   09181 Protein families: metabolism    01007 Amino acid related enzymes [BR:osa01007]     9271247   09182 Protein families: genetic information processing    03016 Transfer RNA biogenesis [BR:osa03016]     9271247    03029 Mitochondrial biogenesis [BR:osa03029]     9271247 Enzymes [BR:osa01000]  6. Ligases   6.1  Forming carbon-oxygen bonds    6.1.1  Ligases forming aminoacyl-tRNA and related compounds     6.1.1.1  tyrosine---tRNA ligase      9271247 Amino acid related enzymes [BR:osa01007]  Aminoacyl-tRNA synthetase   Class I (A)    9271247 Transfer RNA biogenesis [BR:osa03016]  Eukaryotic type   Aminoacyl-tRNA synthetases (AARSs)    Other AARSs     9271247  Prokaryotic type     9271247 Mitochondrial biogenesis [BR:osa03029]  Mitochondrial DNA transcription, translation, and replication factors   Mitochondrial transcription and translation factors    Other mitochondrial DNA transcription and translation factors     9271247 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  tRNA-synt_1b Motif Other DBs NCBI-GeneID:  9271247 NCBI-ProteinID:  XP_015650259 UniProt:  B9F0V7 LinkDB All DBs Position 8:13919922..13925452 Genome browser AA seq 380 aa AA seqDB search MDPSAPSGSSADASASSSSSAVEDLAPGMAAMSLQDRFELLRGIGEECIQEDELMNLLQK KPVPICYDGFEPSGRMHIAQGIVKTINVNKMVRAGCKVKIWIADWFAQLNNKMGGDLKKI QTVGRYMIEIWRAAGMNLDGVEFLWSSEEINNRANEYWPLVMDIACKNNVKRIMRCCQIM GRNDSDELTAAQIFYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCTDIKRKNKPIIL SHHMLPGFKEGQEKMSKSDPSSAIFMEDDEAQVNLKIKQAFCPPNVVDGNPCLEYIKYIV FPWFEMFEVVRKEANGGNKTFTNMDELIDDYKTGALHPADVKPALAKAINQILQPIRDHF NNNSEAKILLNTVKKYRVTN NT seq 1143 nt NT seq  +upstreamnt  +downstreamnt atggacccttcggcgccgtccggtagctccgccgacgcctcggcgtcctcctcttcttcc gccgtagaggacctcgccccgggcatggcggccatgagcctccaagaccggttcgagttg ctgcggggcatcggcgaggagtgtatccaggaggacgagctcatgaatctgctgcagaaa aagcccgtccccatctgctacgacggatttgagccctccggccgcatgcacattgcccag ggcattgtgaagacaatcaatgttaacaagatggtcagggctggatgcaaagtaaaaatt tggatagcagactggtttgctcagctcaacaataagatggggggtgatctaaaaaaaatc cagactgttggacggtacatgattgagatttggagagcagctggtatgaatcttgatggt gtggaattcttgtggtcctcagaagaaatcaataatcgtgcaaatgaatattggccactt gtaatggacattgcctgtaaaaataatgtcaaaagaataatgagatgttgtcagattatg ggtcgaaatgattcggatgagttgacagctgcccaaatattctatccttgtatgcagtgt gctgatatatttttcttgaaggcagacatttgccagttgggcatggaccaaaggaaggtc aatgtgctagccagggagtactgtaccgacatcaaaaggaaaaacaaaccgattattttg tcacatcacatgctccctggttttaaggagggccaggaaaagatgtcaaagagtgatcca tcctcagccatttttatggaagatgacgaggctcaggtaaatttgaagataaaacaagca ttttgccctcccaacgtggttgatgggaacccatgcttggagtacatcaagtatattgtt ttcccttggtttgaaatgtttgaggtggttcggaaggaagcaaatggcggtaacaagaca tttacaaacatggatgaactcatcgatgattataagactggtgctttgcatcctgctgat gttaagccagctctagcaaaagcaataaaccaaatattgcagcctattcgtgaccacttc aataacaacagtgaagcaaagattctgcttaacactgttaagaagtacagagtaaccaac taa

DBGET integrated database retrieval system