KEGG   Oryza sativa japonica (Japanese rice): 107276927
Entry
107276927         CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K14016  ubiquitin fusion degradation protein 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    107276927
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:osa03009]
    107276927
Ribosome biogenesis [BR:osa03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    107276927
SSDB
Motif
Pfam: UFD1 CDC48_2
Other DBs
NCBI-GeneID: 107276927
NCBI-ProteinID: XP_015623812
LinkDB
Position
1:complement(join(2408752..2409202,2409734..2409864,2409991..2410112,2410230..2410262,2410363..2410468,2410689..2410691))
AA seq 281 aa
MDFEEYLNLQSATFAQLYRCLPISLLKKENADDGNRVFMPVSALDRLGYLHIEYPMQFQI
QNATTLQTSYCGVLEFTADEGFIHIPTMMMEHLGLRENDLVLLRSTSIPKATFIKLQPHT
SDFHKLSEPRYLLEYNFRNYFCLTTGETIAVAAGDRFYYLDVVETRPADAVCVIETDCEV
EFDQALDQAEPAAAAAMQVDGVGAGEPEPARFTGFRMRMDGKPVEEEKKTMPPPATAAAP
PKRGLRFGSSAPAAGGGVKEAKSGEKDDGNRFTGKKYSLQF
NT seq 846 nt   +upstreamnt  +downstreamnt
atggatttcgaggagtatctcaacttgcaatcggcgacgttcgcgcagctgtaccgctgc
ttgccgatctcgcttctcaagaaggagaacgccgacgatggcaacagggtcttcatgcct
gtatctgctcttgatcggctcgggtatctgcacatcgagtacccgatgcagtttcagatt
cagaacgccaccacgctgcagacctcgtactgcggcgtgctcgagttcaccgccgacgag
ggcttcatccacatcccgaccatgatgatggagcacttgggcctgcgagagaacgatctc
gtgctgctgcgaagcacgtcgatccccaaggccaccttcatcaagctgcagcctcacacc
tctgacttccacaagctttctgaaccaagatacctgctggagtacaacttccgcaactac
ttctgccttacgaccggcgagacgatcgccgtggcggcgggggacaggttctactacctc
gacgtcgtggagacgaggccggccgacgctgtctgcgtcatcgagaccgactgcgaggtc
gagttcgaccaggccctcgaccaagcggagcccgccgccgccgccgccatgcaggtcgac
ggcgtcggcgccggcgagccggagccggcccggttcaccggcttcaggatgcggatggac
ggcaagccggtggaggaggagaagaagacgatgccgccgccggcgacggcggcggcgccg
cccaaaagggggcttcggtttggctcgtcggctcctgccgccggtggtggcgtcaaggag
gccaagtccggcgagaaagacgatgggaatcggttcaccggcaagaagtattctctgcag
ttttaa

KEGG   Oryza sativa japonica (Japanese rice): 4328514
Entry
4328514           CDS       T01015                                 
Name
(RefSeq) ubiquitin fusion degradation protein 1 homolog
  KO
K14016  ubiquitin fusion degradation protein 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    4328514
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:osa03009]
    4328514
Ribosome biogenesis [BR:osa03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    4328514
SSDB
Motif
Pfam: UFD1 DUF5088
Other DBs
NCBI-GeneID: 4328514
NCBI-ProteinID: NP_001396288
LinkDB
Position
2:join(4573584..4573586,4573734..4573811,4574332..4574356,4574438..4574470,4574602..4574723,4574798..4574928,4575077..4575300,4575392..4575633,4575836..4575925)
AA seq 315 aa
MYFEGYGYRGSTFEQTYRCYPASFIDKPQLETGDKIIMPPSALDRLASLHIEYPMLFEVH
NAAAERTSHCGVLEFIAEEGMIYMPYWMMQNLLLTEGDMVFIKNANLPKGTYVKLQPHTT
DFLDISNPKAILEKTLRNYSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVD
FAPPLDYKEPERQKAAVPPSTAPTAEEAAEEEPKFIPFTGPGRRLDGKAPKDKDVSASSP
AKRQANATNSVQPSTASTSQSSSSRKTTEKLVFGPGGNRTSKETEKVPEKEPKEDPKKDE
PKFSAFTGRKYSLKG
NT seq 948 nt   +upstreamnt  +downstreamnt
atgtatttcgaaggctatggctaccgtggaagtaccttcgagcagacatatcgctgctac
cctgcgtctttcattgacaagcctcagcttgaaactggtgacaaaattattatgccacct
tctgctctggatcgtctagcatctctgcatattgaatatcctatgctatttgaagtccac
aacgcggcagcagaacggacttcacactgtggtgtcctggagttcattgcagaagaaggc
atgatctacatgccatattggatgatgcaaaatcttcttctaacagagggggatatggtg
ttcataaaaaatgccaatctccctaaaggaacatatgtgaagctgcagcctcacacaaca
gacttcttagacatttcaaacccaaaagcaatcttggagaaaacattgcggaattactct
tgtctaaccactggtgacagcattatggtagcatataataacaagaaatactacattgat
atagtggaaacaaagccttccaatgctatcagtattattgagaccgactgtgaagtcgac
tttgctccaccacttgactataaagaacctgagcgacaaaaagctgctgttcctccaagt
acagcgcctactgctgaagaggcagctgaagaagaaccaaagttcatcccctttactgga
cctgggaggcgtctggatgggaaggctcctaaagataaggatgtatcagcttcatcccct
gcaaaacggcaagctaatgcaacaaacagcgtgcagccctcaacagcgtccacatcacag
agcagttcatctcgtaaaaccacggaaaagcttgtttttggccctggtgggaaccgcaca
tctaaggaaacagaaaaggtgcctgaaaaggaaccgaaggaggatcccaagaaagatgaa
ccgaaattctcagcttttacaggaaggaaatactcattgaagggctga

KEGG   Oryza sativa japonica (Japanese rice): 4336742
Entry
4336742           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K14016  ubiquitin fusion degradation protein 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    4336742
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:osa03009]
    4336742
Ribosome biogenesis [BR:osa03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    4336742
SSDB
Motif
Pfam: UFD1
Other DBs
NCBI-GeneID: 4336742
NCBI-ProteinID: XP_015633830
UniProt: A0A0P0WDV8
LinkDB
Position
4:join(29595676..29595678,29596323..29596400,29596517..29596541,29596634..29596666,29596737..29596858,29596959..29597089,29597185..29597411,29598118..29598374,29598802..29598888)
AA seq 320 aa
MFYAGYGYHGSNFEQTYRCYPASFFDKPHLEGGDKVIMPPSALDRLASLHIEYPMLFELH
NDATQRISHCGVLEFVAEEGMIIMPYWMMQNMLLQEGDTVRVKNTTLPKGTYVKLQPHTT
DFLDISNPKAILEKTLRNFSCLTTGDSIMVAYNNKQYYIDIVETKPASAVSIIETDCEVD
FAPPLDYKEPENPQQPSVPASEATAEDENAKVEDELKFKPFTGSGKRLDGKASKLQATEV
PSASRSSPSDSNKRVNQETLAPASSGASNSTRQKSGKLVFGSSANNNKEPQKASVKDDES
PKKDEPKFQAFSGKSYSLKR
NT seq 963 nt   +upstreamnt  +downstreamnt
atgttttatgcaggatatggctaccatgggagtaactttgagcaaacataccgttgttat
ccagcatctttctttgacaagccacacctggaaggtggcgacaaagtaattatgccacca
tctgctcttgatcggcttgcttctctgcacattgaatatcctatgctgtttgagttgcat
aatgatgcaactcagcggatttcacactgtggtgtgctggaatttgtggcagaagaaggc
atgatcatcatgccctactggatgatgcaaaacatgcttcttcaagagggtgacactgtc
cgtgtaaaaaatacaacccttcccaagggtacatatgtcaagttgcagcctcacacaact
gactttttggacatctcaaatccgaaggccatcctggagaaaacactaagaaacttctct
tgtttaaccaccggcgatagtatcatggtagcttacaacaacaaacaatactacattgac
attgttgaaacaaaacctgcttccgcagttagtattattgagacggactgtgaagtggac
tttgcacctcctcttgattacaaagaacctgaaaatccgcagcaaccatcagttcctgca
agtgaggcaactgctgaagatgaaaatgctaaagttgaagatgaactgaaattcaagccg
tttactggttctggaaagcggctggatggtaaagcctcaaagctacaagcaacagaggtc
ccttctgcctcacgttcttccccttcagactcaaacaaaagggtgaatcaggaaacgtta
gcaccagcatcttcaggagctagcaactccacacgccagaaatcaggaaagcttgttttc
ggttcaagtgcaaacaacaacaaagaaccgcaaaaggcttccgttaaggatgatgagtct
ccaaagaaggacgagcccaagttccaagcatttagtgggaagagctactccttgaaacgt
tag

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