Oryza sativa japonica (Japanese rice): 107276927
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Entry
107276927 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K14016
ubiquitin fusion degradation protein 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107276927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
osa03009
]
107276927
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
107276927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UFD1
CDC48_2
Motif
Other DBs
NCBI-GeneID:
107276927
NCBI-ProteinID:
XP_015623812
LinkDB
All DBs
Position
1:complement(join(2408752..2409202,2409734..2409864,2409991..2410112,2410230..2410262,2410363..2410468,2410689..2410691))
Genome browser
AA seq
281 aa
AA seq
DB search
MDFEEYLNLQSATFAQLYRCLPISLLKKENADDGNRVFMPVSALDRLGYLHIEYPMQFQI
QNATTLQTSYCGVLEFTADEGFIHIPTMMMEHLGLRENDLVLLRSTSIPKATFIKLQPHT
SDFHKLSEPRYLLEYNFRNYFCLTTGETIAVAAGDRFYYLDVVETRPADAVCVIETDCEV
EFDQALDQAEPAAAAAMQVDGVGAGEPEPARFTGFRMRMDGKPVEEEKKTMPPPATAAAP
PKRGLRFGSSAPAAGGGVKEAKSGEKDDGNRFTGKKYSLQF
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgaggagtatctcaacttgcaatcggcgacgttcgcgcagctgtaccgctgc
ttgccgatctcgcttctcaagaaggagaacgccgacgatggcaacagggtcttcatgcct
gtatctgctcttgatcggctcgggtatctgcacatcgagtacccgatgcagtttcagatt
cagaacgccaccacgctgcagacctcgtactgcggcgtgctcgagttcaccgccgacgag
ggcttcatccacatcccgaccatgatgatggagcacttgggcctgcgagagaacgatctc
gtgctgctgcgaagcacgtcgatccccaaggccaccttcatcaagctgcagcctcacacc
tctgacttccacaagctttctgaaccaagatacctgctggagtacaacttccgcaactac
ttctgccttacgaccggcgagacgatcgccgtggcggcgggggacaggttctactacctc
gacgtcgtggagacgaggccggccgacgctgtctgcgtcatcgagaccgactgcgaggtc
gagttcgaccaggccctcgaccaagcggagcccgccgccgccgccgccatgcaggtcgac
ggcgtcggcgccggcgagccggagccggcccggttcaccggcttcaggatgcggatggac
ggcaagccggtggaggaggagaagaagacgatgccgccgccggcgacggcggcggcgccg
cccaaaagggggcttcggtttggctcgtcggctcctgccgccggtggtggcgtcaaggag
gccaagtccggcgagaaagacgatgggaatcggttcaccggcaagaagtattctctgcag
ttttaa
Oryza sativa japonica (Japanese rice): 4328514
Help
Entry
4328514 CDS
T01015
Name
(RefSeq) ubiquitin fusion degradation protein 1 homolog
KO
K14016
ubiquitin fusion degradation protein 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
4328514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
osa03009
]
4328514
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
4328514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UFD1
DUF5088
Motif
Other DBs
NCBI-GeneID:
4328514
NCBI-ProteinID:
NP_001396288
LinkDB
All DBs
Position
2:join(4573584..4573586,4573734..4573811,4574332..4574356,4574438..4574470,4574602..4574723,4574798..4574928,4575077..4575300,4575392..4575633,4575836..4575925)
Genome browser
AA seq
315 aa
AA seq
DB search
MYFEGYGYRGSTFEQTYRCYPASFIDKPQLETGDKIIMPPSALDRLASLHIEYPMLFEVH
NAAAERTSHCGVLEFIAEEGMIYMPYWMMQNLLLTEGDMVFIKNANLPKGTYVKLQPHTT
DFLDISNPKAILEKTLRNYSCLTTGDSIMVAYNNKKYYIDIVETKPSNAISIIETDCEVD
FAPPLDYKEPERQKAAVPPSTAPTAEEAAEEEPKFIPFTGPGRRLDGKAPKDKDVSASSP
AKRQANATNSVQPSTASTSQSSSSRKTTEKLVFGPGGNRTSKETEKVPEKEPKEDPKKDE
PKFSAFTGRKYSLKG
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtatttcgaaggctatggctaccgtggaagtaccttcgagcagacatatcgctgctac
cctgcgtctttcattgacaagcctcagcttgaaactggtgacaaaattattatgccacct
tctgctctggatcgtctagcatctctgcatattgaatatcctatgctatttgaagtccac
aacgcggcagcagaacggacttcacactgtggtgtcctggagttcattgcagaagaaggc
atgatctacatgccatattggatgatgcaaaatcttcttctaacagagggggatatggtg
ttcataaaaaatgccaatctccctaaaggaacatatgtgaagctgcagcctcacacaaca
gacttcttagacatttcaaacccaaaagcaatcttggagaaaacattgcggaattactct
tgtctaaccactggtgacagcattatggtagcatataataacaagaaatactacattgat
atagtggaaacaaagccttccaatgctatcagtattattgagaccgactgtgaagtcgac
tttgctccaccacttgactataaagaacctgagcgacaaaaagctgctgttcctccaagt
acagcgcctactgctgaagaggcagctgaagaagaaccaaagttcatcccctttactgga
cctgggaggcgtctggatgggaaggctcctaaagataaggatgtatcagcttcatcccct
gcaaaacggcaagctaatgcaacaaacagcgtgcagccctcaacagcgtccacatcacag
agcagttcatctcgtaaaaccacggaaaagcttgtttttggccctggtgggaaccgcaca
tctaaggaaacagaaaaggtgcctgaaaaggaaccgaaggaggatcccaagaaagatgaa
ccgaaattctcagcttttacaggaaggaaatactcattgaagggctga
Oryza sativa japonica (Japanese rice): 4336742
Help
Entry
4336742 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K14016
ubiquitin fusion degradation protein 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
4336742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
osa03009
]
4336742
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
4336742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UFD1
Motif
Other DBs
NCBI-GeneID:
4336742
NCBI-ProteinID:
XP_015633830
UniProt:
A0A0P0WDV8
LinkDB
All DBs
Position
4:join(29595676..29595678,29596323..29596400,29596517..29596541,29596634..29596666,29596737..29596858,29596959..29597089,29597185..29597411,29598118..29598374,29598802..29598888)
Genome browser
AA seq
320 aa
AA seq
DB search
MFYAGYGYHGSNFEQTYRCYPASFFDKPHLEGGDKVIMPPSALDRLASLHIEYPMLFELH
NDATQRISHCGVLEFVAEEGMIIMPYWMMQNMLLQEGDTVRVKNTTLPKGTYVKLQPHTT
DFLDISNPKAILEKTLRNFSCLTTGDSIMVAYNNKQYYIDIVETKPASAVSIIETDCEVD
FAPPLDYKEPENPQQPSVPASEATAEDENAKVEDELKFKPFTGSGKRLDGKASKLQATEV
PSASRSSPSDSNKRVNQETLAPASSGASNSTRQKSGKLVFGSSANNNKEPQKASVKDDES
PKKDEPKFQAFSGKSYSLKR
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atgttttatgcaggatatggctaccatgggagtaactttgagcaaacataccgttgttat
ccagcatctttctttgacaagccacacctggaaggtggcgacaaagtaattatgccacca
tctgctcttgatcggcttgcttctctgcacattgaatatcctatgctgtttgagttgcat
aatgatgcaactcagcggatttcacactgtggtgtgctggaatttgtggcagaagaaggc
atgatcatcatgccctactggatgatgcaaaacatgcttcttcaagagggtgacactgtc
cgtgtaaaaaatacaacccttcccaagggtacatatgtcaagttgcagcctcacacaact
gactttttggacatctcaaatccgaaggccatcctggagaaaacactaagaaacttctct
tgtttaaccaccggcgatagtatcatggtagcttacaacaacaaacaatactacattgac
attgttgaaacaaaacctgcttccgcagttagtattattgagacggactgtgaagtggac
tttgcacctcctcttgattacaaagaacctgaaaatccgcagcaaccatcagttcctgca
agtgaggcaactgctgaagatgaaaatgctaaagttgaagatgaactgaaattcaagccg
tttactggttctggaaagcggctggatggtaaagcctcaaagctacaagcaacagaggtc
ccttctgcctcacgttcttccccttcagactcaaacaaaagggtgaatcaggaaacgtta
gcaccagcatcttcaggagctagcaactccacacgccagaaatcaggaaagcttgttttc
ggttcaagtgcaaacaacaacaaagaaccgcaaaaggcttccgttaaggatgatgagtct
ccaaagaaggacgagcccaagttccaagcatttagtgggaagagctactccttgaaacgt
tag
DBGET
integrated database retrieval system