Oryza sativa japonica (Japanese rice): 107277028
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Entry
107277028 CDS
T01015
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107277028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
107277028
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107277028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
107277028
NCBI-ProteinID:
XP_066163916
LinkDB
All DBs
Position
2:join(26719253..26721586,26722510..26722662,26722803..26724635)
Genome browser
AA seq
1439 aa
AA seq
DB search
MPRRKGKGKGVEDEVEVYEPASPPERVLIILDSSEDDLDLQEVRRSLMITGRGRARAAER
VGEEAPRGSGRRAAPVVASRRRRRRSRSRSRSPRAARPRAESSRRPTARRARARARSPSL
EIIDVDSGSDRGVVRVKEEPRSGSDSDYNGARGRARARARAPVAATAAKKKKRKRGKEAP
SRAQESREVVRVKEEPNSDGNGAGGRARARSPVAAAAKQRKRGGREAPSRAQESRVPVQI
KEEPYSGSDSDGNVAGGRAVVPAADAKQGKRGKKTPSRGKGRRVVVRETSTPAAPSNGAP
SVGRGKGRGPGRGRQRSKGAVRGRATPVNRVSTGVGSRTRSRLAEQGRAFAQEEEEQVEE
REEEEEEEEQGRAFAQVKEEQVEEQEEDEEEGEEEMEMEVEVEVRSDDNDHGNGGIRGEG
GGTDDVAEIEEEELGTDEDETSDDSDENFSDEEGDEEELEEEEEEEEEEEDDDDDDEEEE
EPGDAPDQPGEAGEESPPRSRIMAMPLMGKRMFEGFSFLQQVDTSTGRDIRARTRSNFKR
KKLLDKKLLKRGTFAKPYCIDVSSSGSEEDVPQPEQSAYGGDCADDDGGSDGNEEHRAVK
RRKLNRRQSAHSDSEEDTTFVCDVKEGSGSRRVQEGAPRRQVKKEGSNKKKDGSTPQCVR
NNGPKVGRQTNGLNGQGGVSFKRNVKIAQRRKRRQATADQEKYGHLLDPMFNEIESNQYE
PVPEEQIDRRLPLVFAFGDDDKLEEKSKHDKLQDEDELWKEFDFALESINVCSHNCEEGE
KEDEQEIPADKAASCIQGKHELIIDEQIGLRCKHCNFVDLEIRFVLPSMVKSCTERDMRK
DHELDLFFDDILTSAGYEGPRDFGGKKTGLVWDLVPGVREDMFPHQQEGFEFMWRKLAGG
TSIEQLRNNANTIEGGCVISHAPGTGKTRLAITFVQSYFAFFPECCPVIIAPRGMLATWE
QEFRKWKVKVPFHVLNSKEINWKEDRTIKQLAIMDENLAQSLARNKLDHKFRRKLKLASW
RKGSSIIGVSYTLFRKLANQSSMDGNMVRNLLLEMPDLLVLDEGHTPRNKKSLIWKVLEE
VRTKKRIILSGTPFQNSFLELSNVLYLIRPKFARHFASKSFKKIGLEDYWTSLTLNNITE
KKIDEIRQILDPIVHIHNGDILQKSLPGLRESVVILNPLPHQKEIITAMENTVTMGTLDA
EYKISLASIHPFLVTCAKLSEKETSSVDVSLLKSLRPNPCVGVKTKFVLEIVRLCEAMKE
RVLVFSQYLEPLSLIMDQLSKMFNWIEGEEILLMSGNVLVQNREALMEAFNDMKSNAKVM
LASTKACCEGITLIGASRVVLLDVVWNPSVGRQAIGRAYRIGQEKIVYTYNLITEGTKEK
DKYDRQAKKDHMSKLLFSKEPHAAGFNLSQEVIFNDKILEAMTSHRELKDMFVKILHSH
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atgccccgccggaaggggaaggggaagggggtcgaggacgaggtcgaggtgtacgagccg
gcgtcccccccggagcgcgtgctcatcatcctcgacagcagcgaggacgatctcgacctg
caggaggtgcgccgctcgctgatgatcacgggccgggggcgcgcgcgggcggcggagcgc
gtgggggaggaggctccgcggggttctgggcggcgcgcggcgccggtggttgctagccgg
cggagacggagacggtcgcggtcgcggtcgcggagcccccgcgccgcccgcccgcgcgcg
gagtcctcgcggcggcctacggcccgccgtgcccgtgcccgtgcacgtagcccctcgcta
gagatcatcgacgtcgacagcgggagcgacaggggcgtggtgcgcgtcaaggaggagccg
cgttccggaagcgactcggactacaatggtgcgagaggtcgtgcgcgtgcgcgggcgcgg
gcgccggtcgccgccaccgccgcgaagaagaagaagaggaaacgaggaaaggaagctcca
agcagagcccaggagagccgggaggttgtccgcgtcaaggaggagccgaattccgacggt
aatggtgcgggaggtcgtgcgcgtgcgcgctcgccggtcgccgccgccgcgaagcagagg
aagcgaggaggaagagaagccccaagcagagcccaggagagccgtgtgcccgttcaaatc
aaggaggagccgtattccgggagcgattccgacggcaatgtggccggtggccgtgcggtc
gtgccggccgccgacgcgaagcaggggaaacggggaaagaaaaccccaagcagaggcaaa
gggcggcgggtggttgttcgcgagacttccacacccgctgctccgtccaatggtgctccc
tccgtcggcaggggaaaaggtagagggcctgggagaggtcgccagagaagcaagggcgct
gttcgtggtcgcgctactccggtgaaccgggtgagcacgggtgttggttcgagaactcgg
tcacgcttggcagagcaggggagagcttttgcacaagaggaagaagaacaagtggaggaa
cgagaggaggaggaggaagaagaagagcaggggagagcttttgcacaagtgaaggaagaa
caagtggaggaacaagaggaggacgaagaagaaggtgaggaggagatggagatggaggtg
gaggtggaggttcgttcagatgacaacgatcatggcaatggtggaatcaggggagaaggt
ggaggtacggacgatgttgcggagatagaggaggaggaattgggtacggatgaagatgaa
accagtgatgatagcgatgagaacttcagcgatgaggaaggggatgaagaggaattggag
gaggaggaggaggaggaggaggaagaagaagatgatgatgatgatgacgaggaggaggag
gaaccgggtgatgcacctgatcaaccgggtgaggccggtgaggaatctcctccccgatca
agaatcatggcaatgccgctgatgggaaagaggatgtttgagggatttagttttctacaa
caggtggacacctcgactggcagggatatcagagctcgcacacgatcaaatttcaaacgc
aagaaactcctggacaagaaactgctcaagcgtgggacgttcgcgaagccttattgtatc
gatgtgtctagctcggggtcggaggaggatgtgccacagccggagcagtcggcgtacggt
ggggattgtgcggatgacgatggcggcagcgatggcaatgaggagcatagagctgtgaag
aggaggaaattgaacaggaggcaaagtgcccatagtgatagcgaggaggatacaacattt
gtatgtgatgtcaaggaaggatcaggttctaggagggtacaagaaggagcacctcgtagg
caggttaagaaggagggttccaacaagaaaaaggatggctccactccacaatgcgtcaga
aacaatggaccaaaagttgggagacaaacaaatgggctcaatggacagggtggtgtatcc
ttcaagagaaatgtaaagattgctcagaggaggaagcgcaggcaagcaacggcagaccaa
gaaaagtatggtcatttgctcgaccccatgtttaatgaaatagagagcaaccaatatgag
cctgttcctgaagagcaaattgacaggagattgcccctggtattcgcatttggggatgac
gataagctggaagagaaatccaaacatgacaagttacaggatgaagatgaactgtggaaa
gaatttgattttgctttggaatccataaatgtttgttctcacaactgcgaggagggtgaa
aaggaagatgagcaagaaatccctgcggacaaagcagcttcatgcatccaagggaagcat
gagctcattattgatgagcaaataggacttcgatgcaagcactgcaactttgttgatctt
gaaatcagattcgtacttccctccatggtaaagtcctgtactgaaagggacatgagaaaa
gatcacgagttagacttgttttttgatgatatcctaacatcagcgggatatgaaggacca
cgtgattttggtggtaaaaagactggcctggtttgggatctagttcctggggtccgggag
gacatgttcccgcaccagcaagaaggttttgagttcatgtggagaaaactagcagggggg
acttcaattgaacagctgaggaacaatgcaaacactattgaaggtggctgtgtgatttct
catgcaccagggacagggaagaccagactagcaatcacatttgttcaatcctactttgcg
ttttttcccgagtgctgtccagtgataattgctcccagagggatgcttgctacatgggaa
caggagttcagaaaatggaaggtgaaggtcccttttcatgtattgaactccaaggagatt
aactggaaagaagacaggaccatcaaacagctggctatcatggatgaaaatttggcccaa
agtttggctagaaacaaattggatcacaaatttaggcgaaagttgaagttggcatcatgg
cgtaaagggagcagtataattggtgtgagctatacgcttttcaggaaactagcgaaccag
agcagcatggatgggaacatggtgaggaatctgctccttgagatgcccgacttgttggtc
cttgatgaagggcacacaccaaggaacaagaaaagtctcatatggaaggttcttgaagaa
gttcgcaccaaaaagcgaataattctatctggtactccatttcagaatagctttcttgag
ctctctaatgtcctgtacctgattagaccaaagtttgcaagacacttcgcttctaaaagt
ttcaagaaaataggccttgaggattactggacatccttgacactgaataacataacagag
aaaaagatagatgaaatccggcaaatactcgatccaattgtgcacatccataacggtgac
attcttcaaaagtctcttccaggattgagagaatcagttgtgattctgaatcctcttcct
catcaaaaggaaatcatcacagcaatggagaacacagtgacaatggggactcttgatgca
gaatacaagatctcccttgcatctatacacccgttcctcgtcacatgtgcaaaactgtcg
gaaaaagaaacatcttctgtggatgtctctttgctgaagagcttacggccaaacccgtgc
gtaggagtcaaaacaaaatttgttttggaaattgtccgtttgtgtgaagccatgaaagag
cgagtacttgttttcagtcaatatcttgaaccactatctctgatcatggaccaacttagt
aaaatgttcaattggatagaaggtgaggagatcctactgatgagtggaaatgtccttgtt
caaaatcgagaagctttgatggaggccttcaatgacatgaaaagcaatgccaaggtaatg
cttgcatcaacgaaggcatgctgtgaaggcattacacttatcggggcatcacgtgtggtt
ctccttgatgttgtatggaacccttcagttggaaggcaggcgattggccgagcttataga
attggtcaagagaagattgtgtatacatacaatctaatcacagaagggacaaaggagaag
gacaaatatgataggcaagctaagaaggatcatatgtccaaactgctattttcaaaagaa
ccccatgctgcaggattcaacttgtctcaagaagtgatattcaatgacaagatattggaa
gcaatgacatcacatagggagctcaaagacatgtttgtgaagattctccattctcactaa
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integrated database retrieval system
