KEGG   Oryza sativa japonica (Japanese rice): 107277180
Entry
107277180         CDS       T01015                                 
Name
(RefSeq) protein CHROMATIN REMODELING 35 isoform X2
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    107277180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    107277180
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     107277180
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII Methyltransf_19
Other DBs
NCBI-GeneID: 107277180
NCBI-ProteinID: XP_025883316
LinkDB
Position
8:complement(join(8845525..8845528,8845670..8847390,8848040..8848186,8848267..8848410,8848815..8849003))
AA seq 734 aa
MCTCIYRRGYLFQLSTEISLSPIHIAVFVENRICGWGYSTTEVLGRICNSSVEKAEERET
VIPAISNTEKMGEKQQKSIPRDRKRKGELDPAADYVKDLWDAFYVTAESTHLDTSEVNNK
KQLDNCNHDIHVYEDLGHVCHECGLVVRKADSLFHYQWKKASRKRTNVNEVCLKKVGSDA
ISLSEDFIFSDIAIHPRHAKNIRPHQLEGFKFLVNNLVTDEPGGCILVHAPGSGEIFMLI
SFIQGFMARHFTARPLVVLPEGILGTWKREFQQWQVEDIPLYDFDSIKADNRVEQLEVLK
SWSSKRSILFVGSKHFTQIVCDDRDENAVAECRDTLLMVPSLLILDEGHTPSIDETDMLQ
SARKVQTPCKVVMSGTLFHNHVKEVFNTLDLVRPGFLKTETFWPIVTRMMGQLEISSARS
ITEISESMEDTLLNDDNFTRKVNVIRSLGELTKDVLHYCKGEDLNEFPVLLDFSVFLELS
PKQKDILCKLEEDHGMLKTSAVGAALYVHPCLSEISEANDVDRDDRVDSLVNSINLGDGV
KARFFLNILALANSAGEKLVAFSQYTLPMKFLERLLVKEMGWHVGKEIFVINGDTSMEDG
QLAMDQFNGSADAKVLFGSIKAFGEGISLVGASRIVILDVHLNPSVTRQAIGSTFRPGQK
KKVFVYRLVAADSPEEKAHETAFNKEVIPKLWFQWSGRCTTEDFKLNQVCIDGSRDELLE
TDVIRQDIKALYQR
NT seq 2205 nt   +upstreamnt  +downstreamnt
atgtgtacatgtatatatagacggggctatctatttcaattaagcactgaaatcagtctg
agtcccatccatattgcagtttttgttgaaaataggatttgtggttggggatacagcact
acagaagttctaggaagaatttgcaattcttctgtggagaaagcagaagaaagagaaaca
gtaattccggccattagcaacacggagaagatgggagaaaaacaacagaaatcaatccct
agggacagaaaaagaaaaggcgagctagatccagcagcagattatgttaaggatctttgg
gatgctttctatgtgactgcggaaagcacacatctcgacacatcagaagtgaataataaa
aaacagttggacaattgcaaccacgatattcatgtttatgaagatctgggccatgtatgc
catgaatgtggtttggtcgtgaggaaagctgactcattatttcactatcagtggaaaaag
gcttcaaggaaaagaacaaatgtgaatgaggtttgcttgaagaaggtaggctctgatgct
attagtctctctgaagatttcatattttcagatattgccattcatccaagacatgccaag
aatatccggcctcatcagttggaaggattcaaattcctggttaataacttggtcactgat
gaacctggaggctgcattcttgttcatgccccaggttcaggggaaatatttatgcttatc
agtttcattcaaggcttcatggcaagacatttcactgcaaggccccttgttgtgcttcct
gaagggatattaggtacatggaagagagaattccagcagtggcaagtggaggacatacca
ctgtatgatttcgattctattaaggctgacaatagagtagagcaactggaagtcctaaaa
tcttggagctctaagaggagcatactctttgttggatccaagcatttcacccaaattgtc
tgcgatgatagggatgaaaatgctgtagctgaatgcagggacacgcttcttatggtcccc
agcttgttgatacttgatgagggccatacacctagcattgatgagactgatatgctacaa
tctgcgcgcaaagtgcaaacgccatgcaaagtggtcatgtctggtacactcttccataat
catgtcaaggaagtgtttaacaccttggatcttgtacgcccaggttttctcaagacggag
acattctggcccattgttacacgtatgatgggtcaactagaaatatcaagtgccaggagt
ataacagagatctctgagtcaatggaagataccctgctgaatgatgataacttcacaaga
aaagttaatgttatcagaagtcttggagaactaaccaaagatgtgcttcactactgtaag
ggtgaggacttgaatgaatttcctgtcttactagacttcagtgtgttcttggaactcagt
cccaagcagaaagacattctttgcaagttagaagaagaccatgggatgctcaaaacaagc
gctgtaggggctgcactctatgttcacccttgcctttcagaaatttctgaagctaatgat
gttgatagggatgacagagttgatagtttggtcaacagcatcaacctgggagatggggtg
aaggccaggttttttctgaacatccttgcgcttgccaactctgcaggagagaaattagtt
gcttttagtcagtatacactccccatgaaatttttggaaaggctgctggttaaggagatg
ggctggcatgtagggaaggaaatttttgtgataaatggtgatactagcatggaagatgga
caattggcaatggatcagttcaacggctctgccgatgcaaaagttctgtttggttccatc
aaggcatttggggagggcatctcccttgtgggtgcatcaagaattgtcatcctagatgtt
cacctgaacccgtctgttacgcgccaagccatcgggagcacattcaggcctggacagaag
aagaaagtgtttgtgtatagacttgtagctgctgattctccagaggagaaggcccatgaa
actgcattcaacaaggaagtcataccaaagctatggttccaatggagcgggcgctgcaca
actgaagacttcaagctgaatcaagtctgtatcgatggctccagagatgaattgttggag
actgatgttattcgtcaggatatcaaggctttgtatcaaaggtaa

KEGG   Oryza sativa japonica (Japanese rice): 4330819
Entry
4330819           CDS       T01015                                 
Symbol
OsJ_08484, OsRad54, RAD54
Name
(RefSeq) dNA repair and recombination protein RAD54
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4330819 (OsJ_08484)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4330819 (OsJ_08484)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     4330819 (OsJ_08484)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII DEAD HDA2-3 SLFN-g3_helicase SWI2_SNF2 YL1
Other DBs
NCBI-GeneID: 4330819
NCBI-ProteinID: NP_001403848
LinkDB
Position
2:complement(join(32621258..32621605,32622428..32622526,32623058..32623250,32623889..32623947,32624029..32624103,32624212..32624295,32624397..32624510,32624616..32624735,32625057..32625189,32625261..32625352,32625918..32626004,32626094..32626168,32626470..32626520,32626692..32626787,32626975..32627061,32627152..32627208,32627315..32627440,32627549..32627789,32627868..32627954,32628100..32628477,32629687..32630027))
AA seq 980 aa
MPSTSKCNRISRVADEEEEEEIVAVSSDADESESESEVGSGAEEEDDDYVGESSDSAGGS
GSGSGDGDGDEEGGRSDIGDGEGEGGGRRVRSACRGVRANDRERKSQNVDALVRGNLVVR
RQPLIPRILSVSDAAAIARKPFKPPCQNGYSENNEQLARRLSARKRFVPWGSVQPFAVTN
ILPQSPAVSSDDSVENEESLPPGIEPLILWQPEGRDKENSNFSAIKVDHLLVRYLRPHQR
EGVQFMFDCVSGLLNDDGISGCILADDMGLGKTLQSITLLYTLLCQGFDAKPMVKRAVVV
TPTSLVSNWESEIIKWLKGRVQLLALCESTRADVLSGIESFLKPLSRLQVLIVSYETFRM
HSSKFERPGSCDLLICDEAHRLKNDQTLTNKALAALPCKRRILLSGTPMQNDLEEFFSMV
NFTNPGVLGDATYFRRYYEAPIICGREPTASAEEKNLGSERSAELSAKVNLFILRRTNAL
LSNHLPPKIVEVVCCKLTALQTALYNHFIHSKNVKRLISEGTKQSKVLAYITALKKLCNH
PKLIYDTIKSNNSGGSGFDDCLRFFPPELFSGRSGSWTGGGGMWVELSGKMHVLARLLGH
LRLKTDDRIVLVSNYTQTLDLFAQLCRERRYPYIRLDGATSINKRQKLVNQFNDPSRDEF
VFLLSSKAGGCGLNLVGGNRLILFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTI
EEKVYQRQMSKEGLQKVIQQEQADGKMQGSSLSTEDLRDLFTFHEQIRSEIHENLKCNRC
NKDGCMVLDGSKFDSAATEHEASNSGENSYIDIGGFGAISGCVQKMNSSNQQIGSPSEED
LGSWGHHSDPSTVPDTILQCSSGDEVSFVFTNQIDGKLVPVESMARAATHRTHEVTVNAE
KEVGKINSSNVPGTERQSLLGKNLKMMGFNLKNSSMKFPTKSRRMLPNCLQGMNKTSTSS
DHQQTKKLHVISDASDDDFV
NT seq 2943 nt   +upstreamnt  +downstreamnt
atgccttcgacgagcaaatgcaaccgcatcagccgcgtcgccgatgaggaggaggaggag
gagatcgttgccgtctcctccgacgccgacgaatcggagtcagagtcggaggtggggagt
ggagcggaggaggaggatgacgactacgtgggggagagtagtgactcggccggcggcagc
ggcagtggcagcggcgacggcgacggcgacgaggaaggaggtaggagcgacattggcgat
ggcgagggcgagggcggcgggcggcgagttcggagcgcgtgtcgcggcgtgagagcgaac
gaccgggagaggaaatcgcagaatgtggatgccctcgtcaggggaaatctagttgtaaga
aggcagccacttattccacgtattctttcggtttctgatgcggcagcaatagctcgaaag
ccattcaaacctccctgtcaaaatggatacagtgaaaataatgagcaacttgctcggcgc
ctttcagctcgtaaaagatttgtcccatggggttcggtgcagccatttgcagttacaaat
attcttccacaatcacctgctgtttctagtgatgattccgtagaaaatgaggaatccctt
ccaccaggcatagagccattgattttgtggcaacccgaggggcgtgacaaggaaaacagc
aatttttctgcaatcaaggttgatcacttgcttgtacgttacctccgaccccatcaaagg
gaaggagttcagtttatgtttgattgtgtatctgggttgttaaatgatgatggaatatct
ggttgcattttagctgatgacatgggattggggaagactttacagtcgataactttacta
tacacccttctttgccaaggatttgatgctaagccaatggttaaaagggctgtcgtcgta
acccccacaagtttagttagcaactgggaatctgagataattaaatggttaaaaggcaga
gtgcagttgcttgctctttgtgaaagcacacgcgctgatgttctttctggaattgaaagt
ttcttaaaacctttgagccgtcttcaggtactcatcgtatcttatgagacattccgcatg
cattcttcaaaatttgaaaggccgggaagctgtgacctcctcatatgtgacgaggcccac
aggctgaaaaatgatcagaccctaaccaataaagccttggctgcccttccttgtaaacgg
cgtatcctgttatcaggcaccccaatgcagaatgatctggaggagttcttttcaatggta
aatttcacaaacccaggagttctgggggatgctacatatttccgcagatattatgaagca
ccaatcatttgcggaagagagcccacagcaagtgcagaagaaaagaacttgggatctgag
agatctgcagagctcagtgcaaaagtaaatctgtttatattgagacggacgaatgccctg
ttatccaatcacttgccaccaaagatcgttgaagtagtgtgctgcaagttgactgctttg
caaactgcgctgtacaaccacttcatacattcaaaaaatgttaaacgcttgatatctgaa
ggaacaaagcaatccaaagttttggcttatattactgctcttaagaagctatgcaaccat
ccaaagctgatctatgacaccataaaaagtaataattcagggggctctggttttgacgac
tgcctgcgcttttttcctcctgaactgttttcgggaagatctggatcatggaccggtgga
ggaggaatgtgggtagaactgtctggcaaaatgcatgtcttagctagattactggggcac
ctccgtctgaaaactgatgatcgtattgttcttgtatcaaattatacccagacattggat
ctgtttgcacaattatgtcgggaaaggagatacccgtatattaggcttgatggagcaaca
tccattaataaaaggcaaaagttggtgaaccaattcaatgatccatccagagatgagttt
gtctttctacttagtagcaaggcaggtggctgtgggcttaatttggttggtggaaatcga
ttgattctctttgatcccgattggaaccctgccaatgataagcaggctgctgctagagta
tggagagatggacaaaaaaagagagtgtacatatacaggttcttaagcacaggaaccatt
gaggagaaggtatatcagcgtcagatgtcgaaagaaggtctccaaaaagttattcagcag
gaacaagcagatggcaaaatgcaggggagttctctttcaacagaagatctgcgtgatctt
tttaccttccatgaacaaatcaggtctgaaatacatgaaaatttgaagtgcaatcgctgt
aacaaggatggatgtatggttctcgatggtagcaaatttgattcagcagccactgagcat
gaggcttctaactcaggagagaacagttacattgatattggtggatttggagcgatctct
ggatgtgtgcagaaaatgaatagttcgaatcaacagattggaagtccttctgaagaagat
ttaggaagttggggccatcattctgatccatcaactgtacctgatactatactccagtgt
tcttctggtgatgaggtttcttttgttttcacaaatcagatcgatgggaaacttgttcca
gttgaatctatggcgcgagctgcaactcatcgaacacatgaagtgactgttaatgcagaa
aaagaagtgggaaaaatcaattcttctaatgtacctggaaccgaacggcaatctctactt
ggaaaaaatctgaagatgatgggattcaatttaaagaattcgtctatgaaattcccaact
aagtccagaagaatgctgccaaactgtttgcaagggatgaacaaaaccagcacatcttca
gatcatcaacaaactaaaaagcttcatgttatttctgatgcgtctgatgatgattttgta
tga

KEGG   Oryza sativa japonica (Japanese rice): 4338690
Entry
4338690           CDS       T01015                                 
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4338690
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4338690
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     4338690
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII DEAD
Other DBs
NCBI-GeneID: 4338690
NCBI-ProteinID: XP_015640540
LinkDB
Position
5:join(19195050..19197296,19197845..19197997,19198086..19200023)
AA seq 1445 aa
MDRAARLARRGGGVTVAEYRMVRGRRRGGDAGPVVVIDVEDDGEDAADDSAGGGGGAAAA
VKRRVVVPGAVATRTRSRRMAMAQQAPVTPPAAAEEAPSRRRKRKGAASAEAGGGGPSKR
RVRSSGSAGGRGARKRKEAEADEEEAEAEAEEEAEAEAGTPARGESMEVSQVDGGGSSGR
ADDASHNGNGESRVCNADGIDQASEERPSVAGGDLIEEEHYGNGEASVAGGDRIEEHCGN
VEASVANSNRDGGEIIAGEGTEDRGNTELSVVDPVNEELASDEDDYDDEMLEEKLVGDVI
RAYSNGADLDTNGVDWEAEDEMEFADLDTNVVDWEAEDEMEFDDDNDNDADDDGDNFGGD
ADEGDKSVQMHDFSKVETQDLVSHNVNVSEVRPHEDEEAIKDEMESKGKGSLSFNEGSSY
IEILDSDEEVKVVNDTGNALRRKPLVPAKLPIVPSCVAWRTRSSWGMKEERISYNTYFEV
LSDEPKEDDDDTEVELDDEEDDENDDDCNSASCDEEDEEEEEEREEEEEEAQRRKQKKGI
DSSDDEMIDDAVDCGIDWEEDYPEVDFTRPLTFQKDGSEAPVGSEAFTEQQKRSRFTWEL
ERRKKLKLGMMTNHRLYERDLESDSNSSDSSQNRKNGCQGSGDHRTGRKRKNPLSKSGKK
SSRMLKRQSLMKLLMDKMCSNDDGKSTPFDQKPQIEYSFKDLHPLVFSFGDDDPSPTDRS
EQDAALDMLWADLDFTLESENIGTYYDDEGQEDSLLDHALAPITPCSRGKHEFIIDEQIG
IRCKYCSLVNLEIRFILPLLASNFAEKPAWRNSSCLKTALMCPDLYEQTGTGDGQSQDFH
INGTVWDLIPGVITDMYQHQREAFEFMWTNLVGDIRLNEIKHGAKPDVVGGCVICHAPGT
GKTRLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWEQEFKKWNVNVPFHIMNTTDYSGKED
RDICRLIKKEHRTEKLTRLVKLFSWNRGHGVLGISYGLYMKLTSEKVGCTGENKVRTILL
ENPGLLVLDEGHTPRNERSVIWKTLGKVKTEKRIILSGTPFQNNFLELYNILCLVRPRFG
EMFLTKTRVGRRHCVSKKQRDKFSDKYEKGVWASLTSNVTDDNAEKVRSILKPFVHIHNG
TILRTLPGLRECVIVLKPLPLQKSIIRKVENVGSGNNFEHEYVISLASTHPSLVNAINMT
EEEASLIDKPMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKEHLR
KIFKWREGKEILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLTGASRVV
LLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFSTE
DEFSNVRNMLSKAEMEHCSKLISEDKVLEEMTSHDQLKGMFLKIHYPPTESNIVFTYNQI
APELS
NT seq 4338 nt   +upstreamnt  +downstreamnt
atggatcgcgccgcgcgcctcgcccgccgcggcggcggcgtgaccgtggctgaataccgc
atggtgcggggccgccgccgcggaggcgacgcggggccggtggtggtcatcgatgtcgaa
gacgacggggaggacgctgctgatgactccgccggcggtgggggtggagcggcggcggcg
gtgaagaggagggtggtggttccgggggccgtggcgacgcggacgcgatcgcggaggatg
gcgatggcgcagcaggcgcccgtcacgccgccggctgcggcggaggaggcgccgagcagg
aggaggaagaggaagggggcggcgagtgcggaggcgggtggcggagggccgtcgaagcgc
cgcgtgcgatcctcggggtcagcgggcgggcgtggtgcgcgcaagcgcaaggaggcggag
gcggatgaggaggaagcggaagcagaggctgaggaggaagcggaagcagaggcggggact
cccgctcgcggagaatcgatggaggtgtcacaggttgacgggggtggcagcagcgggcga
gccgatgacgcttcgcacaatggtaatggcgagtctcgcgtgtgtaacgcggatggcatt
gatcaggcaagcgaggagcgtccaagtgtcgctggtggggatctaattgaggaggagcac
tacgggaatggggaagccagcgtcgctggtggggatcgaattgaggagcactgcggtaat
gtggaagccagtgtcgccaattcgaatcgtgatggcggtgagatcatcgctggggagggc
acagaggatcgtgggaacacggagttatcagtggtggatccagtgaatgaagagttggct
tccgatgaggatgattacgacgatgaaatgttggaggaaaagcttgtcggagatgtcatt
cgtgcttacagcaatggcgctgatttggatacaaatggagtggactgggaagccgaggat
gagatggaatttgctgatttggatacaaatgtagtggactgggaagctgaggatgagatg
gaatttgatgatgataatgataatgatgctgatgacgacggtgataattttgggggtgat
gcggatgaaggtgacaaatctgtacaaatgcatgacttttctaaggtggaaacacaagat
ttggtgagccacaatgttaatgttagtgaagtgaggcctcatgaggatgaggaggctatc
aaggatgagatggagtcaaagggaaaaggatctctcagttttaatgaagggagctcctat
attgaaattcttgactctgacgaggaagtcaaagtggtcaatgacacagggaatgccttg
agaaggaagccattagtaccagcgaagctaccgattgtgccatcttgtgttgcatggaga
actcggtcatcatggggtatgaaggaggagaggatttcttacaatacatatttcgaggta
ttgtctgatgagccaaaagaggatgatgatgacactgaagtggaattggatgatgaggag
gacgatgaaaacgatgacgattgcaatagtgctagctgtgatgaagaagatgaagaggaa
gaagaggaaagagaggaggaagaggaagaagctcaaaggagaaagcaaaagaaagggatt
gactcatctgatgatgagatgattgatgatgctgtagattgtggcattgattgggaggag
gattacccagaggttgattttactcggccacttacctttcagaaagatggcagtgaggcc
cctgtgggcagcgaggcttttacggagcaacagaagagatcgcgatttacatgggagctt
gagaggaggaaaaaactgaagcttggcatgatgacgaatcatcgtttgtatgaacgagac
ctggaatcagattccaactcatcagattctagtcagaatcgaaaaaatggatgtcaaggg
agtggtgatcacagaactgggaggaaaaggaagaatccattatcaaaatctggtaagaaa
tccagccgcatgttaaagaggcagtctcttatgaagcttctgatggacaagatgtgtagc
aatgatgatgggaagtctactccttttgaccagaagccccagattgagtatagtttcaag
gatttgcatccgttggttttttcatttggggacgatgatcctagtccaactgataggtca
gagcaagatgctgcacttgatatgctatgggctgatttagacttcactttagagtcagag
aacattgggacttattatgatgatgagggccaagaggacagtctgctagatcatgcactt
gctcctattacaccttgttctagagggaagcatgaatttattattgatgagcaaatagga
atcagatgcaaatactgctccttggtaaatctggaaatcagatttattttaccattgctg
gcctccaattttgcagagaaacctgcatggcgaaacagctcttgtttgaagactgcgttg
atgtgtcctgatctttatgaacaaacagggactggtgatggacaatctcaagatttccat
ataaatggaactgtgtgggatctcattcctggcgtcattactgatatgtatcagcatcaa
cgtgaggcatttgagtttatgtggacaaatctagtgggtgatattaggcttaatgaaata
aagcatggggctaagcctgatgttgttggaggatgtgtgatctgtcatgccccagggaca
ggaaagactcgtttggctattgtgtttatccagacatacatgaaggtgttcccagactgc
cgaccggtgattattgcacctcgtgggatgctgtttgcttgggaacaagagttcaagaaa
tggaatgtcaacgttccttttcatataatgaacactactgattactctgggaaggaagac
agagatatatgtagattaataaagaaagagcatcggactgaaaagttgactaggcttgta
aaactgttttcatggaacaggggtcatggtgttcttggaattagttatggtctatatatg
aaactaacatctgaaaaggttggctgcactggagaaaacaaagtgagaactattcttctt
gagaaccctggtttgcttgttctcgatgaagggcacacacctaggaatgagcgcagtgtt
atttggaagacactaggaaaagttaaaaccgagaagcgtataattctatctggaactcct
ttccaaaataattttcttgagctttacaatattctctgtttggtgaggcctaggtttggt
gaaatgtttttgactaaaacaagagtgggtcgaaggcactgtgtctcaaagaagcaacgg
gataaattttctgataaatatgagaaaggagtttgggcttccttaactagtaatgtaact
gatgataatgcagaaaaggtaagatcaatactgaaaccatttgttcatatccataatggg
actattcttcgaactcttccggggctcagagagtgtgtgatagttctgaaacctctaccg
cttcaaaagagtatcattagaaaggtagaaaatgttggatctggtaacaattttgaacat
gagtatgttatttctttagcctccacacatccttcacttgtaaacgcaattaacatgacg
gaagaagaagcttcccttattgataaacctatgcttgaaagattaaggtctaatccttat
gaaggagtaaaaacaaggtttgtaatggaagttgttcgtttgtgtgaagcattgaaagaa
aaggtattgatttttagtcaatttattcagccattagaattgataaaggaacatcttcgt
aagattttcaaatggagagaaggaaaagagattctccaaatggatgggaagatcctcccg
agatatcgtcaaaattcaattgaggttttcaataatccggatagtgacgcgagggtgtta
cttgcatctacaagagcttgttgtgaagggattagcctaacaggggcttctagagttgtt
cttctagatgttgtctggaatccagctgttggaaggcaagctatcagcagagcatttagg
ataggacagaagaaatttgtatatacatacaatttaataacttatggaacaggtgaaggt
gacaaatatgataggcaagcagaaaaggaccacttgtccaagttggtcttctctacagaa
gacgagttcagtaatgttaggaacatgctttcaaaagctgaaatggagcactgttctaag
ttgatatccgaggataaggttctggaggaaatgacttcccatgaccagctgaaaggcatg
tttttaaagattcattatccaccaactgagtcaaacattgtttttacttacaaccagatt
gctcctgagttaagttaa

KEGG   Oryza sativa japonica (Japanese rice): 4340671
Entry
4340671           CDS       T01015                                 
Name
(RefSeq) protein CHROMATIN REMODELING 35 isoform X2
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4340671
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4340671
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     4340671
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII ERCC3_RAD25_C RAG1_imp_bd
Other DBs
NCBI-GeneID: 4340671
NCBI-ProteinID: XP_015643526
UniProt: A0A0P0WVB5 Q652G9
LinkDB
Position
6:join(8268703..8269299,8269557..8269868,8270197..8270367,8271136..8272892,8272977..8272980)
AA seq 946 aa
MYYRRQRKASSEANANVFMPGGPNDISFPASNRDHDWGYGGVGKEWEASYARKLQLMNFL
SSLHQRTANPLVTTRMDANMDTPLEQKQKDSSAIIVLDSDDEDGYTEGCEQLTSENNKQQ
APSGLTSPYTTWIVSSAKDQVNGTLHVDGVQSTQIVPYYGQNAPLINQFPLQTSWQPSIQ
YERVILQKRPEEQRVQDLVAASHAEKIAETQVLLTLPTLPNERKRRKTEPTTLVDVDGGT
NLGKRKRKNHQNQAAVDSNLDLQQNDVPSQSYRTMIEEEKPVKESDGLEDLWKDFSLAAE
CTKLDTNEDMSNEKDVDDENEMDDDCNHDIRIHEDLGHVCRICGMIVRKAETIIDYQWKK
ASRTRTNYYESRSKDADEIDTGAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNL
VGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPSARPLVVLPKGILGTWKREFQRWQVE
DIPLYDFYSVKADKRVEQLEVLKSWEAQMSILFLGYKQFSRIICGDGDGNIAAACRDRLL
MVPNLLILDEGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFL
KMESSRPIARRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKAHVIRSLRELT
KDVLHYYKGDILDELPGLVDFSVFLKLSTKQKEIVHKIEAYEKFKRSAVGTALYIHPCLS
EISEGDAADRASNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILP
MKFLERLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGIS
LVGASRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI
PKLWFEWSELCTTEDFKLNQVDIDDSEDELLEANAIRQDIKALYRR
NT seq 2841 nt   +upstreamnt  +downstreamnt
atgtattaccgcaggcaaaggaaggcttcttctgaggccaatgccaatgtgtttatgcct
gggggtccaaatgatatctcatttcctgcatcaaatagggatcatgattggggatatggc
ggtgttggcaaagaatgggaagctagttatgctcgcaaactccagttgatgaattttctt
tcttcactgcatcaacgcactgcaaatcctttggtaaccactagaatggatgctaacatg
gacactcctttggagcaaaaacagaaggacagctcagcaataatagttcttgattccgat
gatgaggacggatatacggaaggatgtgaacagctcacatctgagaacaataaacaacag
gcaccatctggactcactagtccttacacgacatggattgtatccagtgcgaaagaccaa
gtaaatggaaccttgcatgttgatggagtccaaagcactcaaattgttccatattatggt
caaaatgcaccgttaataaatcagttccctttgcaaaccagctggcaaccatctatccaa
tatgaaagggttatattgcagaaaagacctgaggagcaacgcgttcaagatctggtggca
gcaagccatgcagagaagatagcagaaacacaagttctccttactcttcctactcttcct
aatgagagaaaacgaaggaaaacagaacccaccaccctggtagatgttgatggtggaact
aacctaggaaaaagaaaaaggaaaaatcatcaaaatcaagcagcagttgattcaaacttg
gatttgcaacaaaatgatgttccttcacaaagctacaggactatgatagaagaggagaaa
cctgtaaaagaaagtgatggtctcgaggatctttggaaagatttttcattggctgctgaa
tgtacaaagcttgatacaaatgaagacatgtccaatgaaaaagatgtggatgatgaaaat
gagatggatgacgactgcaatcatgacattcgaattcatgaagatctaggccacgtatgc
cgtatttgtggcatgattgttagaaaggctgaaacaataattgattatcagtggaaaaag
gcttcaaggacaagaacaaattactatgaatcacgttcaaaggatgctgatgagattgat
actggtgctgttaaagtttccgaagatttcattgtctctgatattgccattcatccaaga
catgcgaagcaaatgagaccacatcagttggaaggattcagcttcctggtcaagaatcta
gtgggagacaaacctggaggttgcattctagctcatgctcctggttcagggaagacattt
atgctcataagtttcattcaaagcttcttagcaaagtatccttctgcaaggccccttgta
gtgcttccgaaagggattttaggtacttggaagagggagtttcagcggtggcaagtggag
gacataccactatatgatttctattctgttaaggctgacaaaagagtagagcaactggaa
gtcctcaaatcttgggaagcccagatgagcatactatttcttggatacaagcagttctca
cgaatcatctgtggtgatggagatggaaacattgcagctgcgtgtcgggacaggctgctt
atggtacccaacctacttatactagacgagggtcatacaccaagaaatcgggagacagat
gtactggcatcactaaaaagagtccaaacaccacgcaaagtggtcctgtctggtacactt
ttccagaaccacgtttcggaagtgtttaacatcttggaccttgtgcgccctaagtttctc
aagatggaatcatcccgtcctattgctagacgtataatgagtcaggtagcaatatcaggt
atcaggagtttaaaaggggttcatgacagtgcattcactgagtcagtggaagacaccctg
ctgaacgatgacaacttcactagaaaagcccatgttattagaagtcttagagaattaaca
aaagatgtgcttcactattacaagggtgatatcttagatgaactacctggcctagtagat
tttagtgtgtttttgaaactcagtaccaagcagaaagaaattgttcacaagatagaagcc
tatgagaagttcaaaagaagtgcagtggggactgcattgtacattcatccctgcctgtca
gaaatttcagagggtgatgctgcagatagggcgagcaacttgacagatgccactgttgac
agcttgattgagtctatcatcattaaagatggggtgaaagccaagtttttctttaacatt
ctgtctcttgctaactctgcaggagagaagttgcttgccttcagtcaatatatacttccc
atgaaatttttggaaaggttgttggttaagaggctgggctggcatgtagggaaggagatt
ttcatgatatctggtgatactagtgcagacgacagagaagtggcgatggatcagtttaac
aactctgccgatgcaaaagttttgtttggttccatcaaggcctgtggagagggaatctcc
cttgttggtgcatctcgagtcatcattctagatgttcatttgaacccatctgtcacccgt
caagcaattggacgtgcattcaggcccggacagcagaagaaagtgtttgtgtacaggctt
gttgctgctgattctccagaggtgaagttccatgaaactgcattcaagaaagaagttatc
ccaaagctatggtttgaatggagtgagctctgcactactgaagacttcaaactgaatcaa
gttgatattgatgactctgaagatgaacttttggaggctaatgctatccgccaggatatc
aaggctttgtatagaaggtaa

KEGG   Oryza sativa japonica (Japanese rice): 4343066
Entry
4343066           CDS       T01015                                 
Name
(RefSeq) protein CHROMATIN REMODELING 35 isoform X1
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4343066
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4343066
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     4343066
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII ERCC3_RAD25_C RAG1_imp_bd
Other DBs
NCBI-GeneID: 4343066
NCBI-ProteinID: XP_015647718
LinkDB
Position
7:complement(join(14663084..14663087,14663171..14664927,14666036..14666206,14666537..14666869,14667128..14667720,14669092..14669134))
AA seq 966 aa
MAAAGRDPPATPSSRMYYCRQRKASSEVNANVFVPGGQNGISFPASNRAHDWGYGGVREE
WEASYARKLQLINFLSSLHQRTANSLITTRMDANMDTPLEQKQKDSSAIIVLDSDDEDEA
ERCEQLASENNKQQAPSGPTSPCTTWIVSSAKDQVNGTLHVDGVQSTQIVPYGQNAPLIN
QSPLQTSWQPSIQYERVILQRRPEEQRVQDLVAASHAEKIAETQVFLTLPTLPNERKRRK
SEPTTLVDGDGGTNLGKGKRKNHQNQAAVDSILDLQQTVVPLQQNDVPSQSYRTMIEEEK
PVKESDGLEDLWKDFSLAAECTKLDTNEDMSNEKDVDDENEMDDDCNHDIRIHEDLGHVC
RICGMIVRKAETIIDYQWKKASRTRTNYYESRSKDADDIDTGAVKVSEDFIVSDIAIHPR
HAKQMRPHQLEGFSFLVKNLVGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPSARPLV
VLPKGILGTWKREFQRWQVEDIPLYDFYSVKADKRTEQLEVLKSWEARMSILFLGYKQFS
RIICGDGDGNIAAACRDRLLMVPNLLILDEGHTPRNRETDVLASLKRVQTPRKVVLSGTL
FQNHVSEVFNILDLVRPKFLKMESSRPIARRIMSQVAISGIRSLKGVHDSAFTESVEDTL
LNDDNFTRKSHVIRSLRELTKDVLHYYKGDILDELPGLVDFSVFLKLSTKQKEIVHKIEA
YEKFKRSAVGTALYIHPCLSEISEGDAADRATNLTDATVDSLIESIIIKDGVKAKFFFNI
LSLANSAGEKLLAFSQYILPMKFLERLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFN
NSADAKVLFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRL
VAADSPEVKFHETAFKKEVIPKLWFEWSELCTTEDFKLNQVDIDDSEDELLEANAIRQDI
KALYRR
NT seq 2901 nt   +upstreamnt  +downstreamnt
atggccgctgccggcagggacccgccggcgacgccatcctccagaatgtattactgcagg
caaaggaaggcttcttctgaggtcaatgccaatgtgtttgtgcctgggggtcagaatggt
atttcatttcctgcatcaaatagggctcatgattggggatatggcggtgttcgcgaagaa
tgggaagctagttatgctcgcaaactccagttgatcaattttctttcttcactgcatcaa
cgcactgcaaattctttgataaccactagaatggatgctaacatggacactcctttggag
caaaaacaaaaggacagctcagcaataatagttcttgattccgatgatgaggacgaagca
gaaagatgtgaacagctcgcatctgagaacaataaacaacaggcaccatctggacccact
agtccttgcacaacatggattgtatccagtgcgaaagaccaagtaaatggaaccttgcat
gttgatggagtccaaagcactcaaattgttccatatggtcaaaatgcacctttaataaat
cagtcccctttgcaaaccagctggcaaccatctatccaatatgaaagggttatattgcag
agaagacctgaggagcaacgcgttcaagatcttgtggcagcaagccatgcagagaagata
gcagaaacacaagttttccttactctgcctactcttcctaatgagagaaaacgaaggaaa
tcagaaccgaccaccctggtagatggagatggtggaactaacctagggaaaggaaaaagg
aaaaatcatcaaaatcaagcagcagttgattcaatcttggatttgcaacaaactgttgtt
cctttgcaacaaaatgatgttccttcacaaagctacaggactatgatagaagaggagaaa
cctgtaaaagaaagtgatggtctcgaggatctttggaaagatttttcattggctgctgaa
tgtacaaagcttgatacaaatgaagacatgtccaatgaaaaagatgtggatgatgaaaac
gagatggatgacgattgcaatcatgacattcggattcatgaagatctaggccatgtatgc
cgtatttgtggcatgattgttagaaaggctgaaacaataattgattatcagtggaaaaag
gcttcaaggacaagaacaaattactatgaatcacgttcaaaggatgctgatgatattgat
actggtgctgttaaagtttctgaagatttcattgtctctgatattgccattcatccaaga
catgcgaagcaaatgagaccacatcagttggaaggattcagcttcctggtcaagaatcta
gttggagacaaacctggaggttgtattctagctcatgctcctggttcagggaagacattt
atgctcataagtttcattcaaagcttcttagcaaagtatccttctgcaaggcccctcgta
gtgcttccgaaagggattttaggtacttggaagagggagtttcagcggtggcaagtggag
gacataccactatatgatttctattctgttaaggctgataaaagaacagagcaactggaa
gtcctcaaatcttgggaagcccggatgagcatactatttcttggatacaagcagttctca
cgaatcatctgtggtgatggagatggaaacattgcagctgcgtgccgggacaggctgctt
atggtccccaacctacttatactagacgagggtcatacaccaagaaatcgggaaacagat
gtactggcatcactaaaaagagtccaaacaccacgcaaagtggtcctgtctggtacactt
ttccagaatcatgtttcggaagtgtttaacatcttggacctcgtgcgccctaagtttctc
aagatggaatcatcccgtcctatcgctagacgtataatgagtcaggtagcaatatcaggt
atcaggagtttaaaaggggttcatgacagtgcattcactgagtcagtagaagacaccctg
ctgaatgatgacaacttcactagaaagtctcatgttattagaagtcttagagaattaaca
aaagatgtgcttcactattacaagggtgatatcttagatgaactacctggcctagtggat
tttagtgtgttcttgaaactcagtaccaagcagaaagaaattgttcacaagatagaagcc
tatgaaaagttcaaaagaagtgcggtggggactgcattgtacattcatccctgcctgtca
gaaatttcagagggtgatgctgcagatagggcgaccaacttgacagatgccactgttgac
agcttgattgagtctatcatcattaaagatggggtgaaagccaagtttttctttaacatt
ctgtctcttgctaactctgcaggagagaagttgcttgccttcagtcaatatatacttccc
atgaaatttttggaaaggttgttggttaagaggctgggctggcatgtagggaaggagatt
ttcatgatatctggtgatactagtgcagacgacagagaagtggcgatggatcagtttaac
aactctgccgatgcaaaagttttgtttggttccatcaaggcctgtggagagggaatctcc
cttgttggtgcatcgagagtcatcattctagatgttcatttgaacccatctgtcacccgt
caagcaattggacgtgcattcaggcccggacagcagaagaaagtgtttgtgtacaggctt
gttgctgctgattctccagaggtgaagttccatgaaactgcgttcaagaaagaagttata
ccaaagctatggtttgaatggagtgagctctgcactactgaagacttcaaactgaatcaa
gttgatattgatgactctgaagatgaactattggaggctaatgctattcgccaggatatc
aaggctttgtatagaaggtaa

KEGG   Oryza sativa japonica (Japanese rice): 4344376
Entry
4344376           CDS       T01015                                 
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4344376
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4344376
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     4344376
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII SAWADEE AAA_34
Other DBs
NCBI-GeneID: 4344376
NCBI-ProteinID: XP_015646417
LinkDB
Position
7:join(29703931..29703979,29704126..29704376,29704709..29706235,29706572..29706682,29707362..29707520,29707613..29709520)
AA seq 1334 aa
MLKGPVDHRSHPISATPFEVFYDGSWHGVNCIRIRNGNLFVKFIYSGSTVEHNVDGDCLR
LRSRRATCSDCSNVLKPGVDVCVQSSHTPEASSQGGTNASVLLRHDARLITIKKNHQEDK
CLCLFVVILYKNQCPGNAEKVITDRRAEVVTINDIFLLQKLQPEVHEGSMKWSFSKDRLS
LNKGRLISARFSSEITHLIVLSILRGMEFNIKLVEGQIVYQIIKGDQAQWNLDSMAIPPG
FGNTMEIISFQLRDEALRPTITNIPITHVKKNNITEDMRFTVKSEMDSELDRALDVEILY
EHVDLRRSKRLKTQPDRFTSYDTPRFLSGYKKKEASSSPTKHVRGAVHCDSPVDDSKKEV
ESCCVEIPGNVTQKQTGVHSPMVDEKSNSPEGQHKNTTKRTTCSLVKEKASSPEGQHEKT
TKRTTCALPVKEKASSPEGQHKNTIKRTTCSLPVKEEPSSVEIEEKSSKEQSAPEFHIPR
TPAQNKEKHNRPPFSCKPKLFTSSGTLGVNCEPAFCQKVGGKRKRHMCEREYKQMIDQCI
GNIESEMERDSMFNFDANMMNYVQHSYREEDFTWPPSADNQEVEEDELEELWKEMDYSLT
TLALLEQKQVMAQSRINMLVDNFDGLRLDCLTLTDDYRCYYQKKEKFAESGSVNESTDYF
GKVGGIPCHHECILDEELGLACRLCNVVCTEAKDIFPEMFNGNDYKDRPGCSNICLDDDI
LDPSLLANLAPELSELKNSGSVWSAISDLDPKLLPHQRKALDFLWKNLAGSIQVEGMDNS
NVSTGGCVIAHTPGSGKTLLLISFLVSYMKAHPRSRPLVLTPKAAIHTWKREFEKWGISL
PLHVFHHANRSGKPLGAMDSKLRSLLNNFHRPTWTNMRLMDSLDKLFKWHAHPSVLLMTY
SSFLGMTKQDSKVRNRYREFIAEVLMNNPGLLILDEGHNPRSNKSKLRKLLMKVKTEFRI
LLSGTAFQNNFEEYFNTLCLARPRFIGDIMSELVPERKRETVGRRAKHQEAVARRAFVEK
VGQKIESDNKHIRSDGISLLNKLTRGFIDSFEGAKLINLPGIHVYTVFMKPTDIQEEMLA
KVTMPKLGSSRFPLEVELLITIGSIHPWLIKTTKAVSTFFSPAEVKKVERYKRDFAAGCK
AKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFGWRLGEEVLVLQGDQELPVRS
DVMDKFNGDSAGKRKVLIASTTACAEGISLTGASRLVMLDSEWNHSKTRQAIARAFRRGQ
ERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVFLGRYVDDSSQNRVTDIDDEVLKELAD
EDHTGTFHMIVKQD
NT seq 4005 nt   +upstreamnt  +downstreamnt
atgctcaagggacctgtggaccatcggagccatcccatcagtgcaactccatttgaggtg
ttttatgatggatcatggcatggggtaaattgtataaggataaggaacggcaacctgttt
gttaaatttatctactctggatcaacagtcgagcataatgttgatggggattgtctacgc
ttacggtcgagaagggcgacttgttctgattgttcaaatgttctcaagccaggtgttgat
gtctgtgtgcagtcatctcatacacccgaagcaagttcacaaggaggaacaaacgcttct
gtgttactgcgtcatgatgcaaggcttatcacaatcaagaagaatcatcaagaagataag
tgtctctgcttgtttgttgttatactctacaagaaccagtgtcctggcaatgcagaaaaa
gtgataactgatagaagagcagaggtagtaaccataaacgatattttcctcctgcaaaag
cttcaacctgaggtccatgaaggaagcatgaaatggagtttttcaaaggatcgcctctct
cttaataaaggcaggctaataagtgctagattctcctcagaaattacacatctgatagtc
ttgtcgatcttgaggggaatggaattcaacatcaaattggtagaaggccagatcgtttat
caaataatcaaaggagatcaagcacaatggaatcttgattccatggccatccctccaggc
ttcgggaatacaatggagataatatcattccaattgcgtgatgaggccttgcgcccaaca
atcacaaatatccctatcactcatgtgaaaaagaacaatatcacagaagacatgagattc
actgtgaagagtgaaatggatagtgaactggatagggcattagatgttgagatcttgtat
gagcatgtggatctgaggcgttcaaagcgcttgaagactcagccagatcgctttacaagt
tacgatacacctaggttccttagtggctacaagaagaaagaagcaagttcatcacccacc
aagcatgtaaggggagctgtgcattgtgattcaccggtagacgattccaaaaaagaagta
gaatcatgctgtgtagagattccagggaatgttacacagaagcaaacaggtgtacactct
cccatggtcgatgaaaagtcaaactctccagaaggacagcataagaacacaactaagaga
actacatgctctcttgtgaaggaaaaagcaagctctccagaaggacagcatgagaaaaca
acaaagagaactacatgcgctttgcctgtgaaggaaaaagcaagctctccagaaggacag
cataagaacacaataaagagaactacgtgctctttgcctgtgaaggaagagccaagctca
gtggaaatagaggagaaaagctcaaaagagcaaagtgcaccggagtttcacattccacgg
acacctgcacagaataaagagaagcataatcgtcctcctttctcatgtaagccgaagcta
tttacttcatcaggcacccttggtgttaactgtgaaccagcattctgccaaaaggtgggc
gggaaaagaaagaggcacatgtgcgagagagaatacaaacaaatgattgaccaatgcata
ggaaacattgagagtgaaatggagagggactctatgtttaacttcgatgccaatatgatg
aattacgttcagcattcttatcgagaagaggattttacatggccaccttctgctgataac
caagaggtggaggaggatgagcttgaagaactgtggaaagaaatggattattcactgacg
acattagcacttcttgagcaaaagcaggtgatggctcaaagtaggataaacatgctggtg
gataattttgatgggttgaggctggattgtttaactttgacggatgattacagatgctat
tatcaaaaaaaagaaaagtttgcagagtcaggatcagttaatgagagcaccgattatttt
ggaaaagttggaggaataccatgccatcatgaatgcatactggatgaggagcttggacta
gcatgcagattatgcaatgttgtatgcactgaggcaaaggatatatttccagaaatgttc
aatggaaatgactacaaggacagacctggatgcagcaatatttgccttgatgatgatata
cttgatccttctcttcttgcaaacttggcaccagagttgtcagaattgaagaactcaggg
agcgtgtggagtgcaatatctgatcttgatccaaagctgcttcctcaccagagaaaagca
ctagattttctgtggaaaaatttggcggggtcgatacaggttgaaggaatggataactca
aatgtcagtacaggtggctgtgtgatagcacacactcctggatctgggaaaacactgctg
cttatctcatttctggtgagttacatgaaagctcacccaagaagccggccattggtcctt
actccaaaagctgcaattcatacatggaagagagaatttgagaaatggggcatttcactt
cctttacatgtgttccaccatgctaacagaagtggcaagccgttgggggcaatggattct
aaactgcggtcgttattaaataattttcacagaccaacctggacaaatatgcgccttatg
gattctttggacaaactattcaagtggcatgcacatccaagcgtcctcctcatgacatac
tcatctttcttagggatgacgaaacaagactcaaaagtgcgaaaccgataccgagaattt
atcgcagaggtcctgatgaacaaccctggactcttgattcttgacgaggggcacaaccca
agaagcaacaagtccaagttgaggaagctgctgatgaaggtgaagactgagttcagaatc
ctcttatctggcacggccttccagaacaactttgaagagtacttcaacaccctatgtttg
gccagacctcggtttatcggtgatatcatgagtgaactagtgccagagaggaaaagagaa
acagttggcaggagagccaaacatcaagaagcagtggcacgccgcgcctttgtggagaaa
gtgggccagaagattgagtctgacaacaaacatatcagaagtgatggtatcagtttgcta
aacaagcttactcgtggattcatagattcattcgagggagcgaagctgatcaaccttcca
gggatacatgtgtataccgtgttcatgaagcccacggacattcaggaggagatgctggca
aaggtaacaatgcccaagctcgggtcgtcccggttccctctagaggttgagctgctcatc
acgattggctccatccatccttggctcataaaaacgacgaaggccgtcagcaccttcttc
agtccagccgaagtgaagaaggttgagaggtacaagcgagacttcgcggcggggtgcaag
gccaaatttgtgatcgatctgctgcacaagtcgtcgttcagaggggagagggtgctgata
ttctgccacaacgtgtccccgatcacgttcctggtgaagctgatagagatggtgtttggg
tggcggctcggggaggaggtgctggtgcttcagggtgatcaggagctgcctgtccggtcc
gatgtgatggacaagttcaacggcgacagcgcggggaagaggaaggtgctgatcgcgtcg
acaacggcatgcgcggaggggatcagcttgacaggcgcgtcgaggctggtgatgctggac
tcggagtggaaccactccaagacgaggcaggcgatcgcgcgggcgttccggcgtgggcag
gagaggacggtgtacgtctacctcctggtggcatctgggacatgggaggaggagaagtac
aacagcaacaggaggaaagcttggatgtccaaaatggtgttcctgggacgctatgttgat
gattcctcgcaaaaccgtgtcactgacatcgatgatgaggtcttgaaggagcttgccgat
gaagatcacaccggcaccttccatatgattgtcaagcaagactga

KEGG   Oryza sativa japonica (Japanese rice): 9267584
Entry
9267584           CDS       T01015                                 
Name
(RefSeq) protein CHROMATIN REMODELING 35
  KO
K10875  DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    9267584
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    9267584
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     9267584
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII DEAD Helicase_C_2 PAS_12
Other DBs
NCBI-GeneID: 9267584
NCBI-ProteinID: XP_025879608
LinkDB
Position
3:join(3517901..3518512,3519314..3519541,3520228..3520395,3520786..3522545,3522625..3522628)
AA seq 923 aa
MDSDSCKRRKHESGHDSSSRVQSQSSILSRNRILCHQLLEQCDDLKYGSSTNDYKAISMK
RLELISILQKLQEVPIQLPYASPLKSSETNRLVQDGRNSSCRNIIDLDSDNDEDYTFANV
DNIGANTTVVLVDSDDGDSVASFVDEKSSDSKQNANYIEESVLPEQHAQQQEISMLDNEN
ISSEAQAVKKGKDSMDINDVIYNKSGHEEIGEEEAQAENVQIKGNLKKEIISVASDELAC
EVMRSQSPTNGNFDQYDNSSPVDELEGLWMDMYLAMACSKTVGSDHNIVPSENSCEQAED
ECQHDFLMKDDLGIVCRVCGLIQQRIENIFEYQWKKRKQSYRARPSEHRNSSDADAIDKT
SGAILEVVPDALCLHPQHSQHMKPHQVEGFNFLVKNLADENNPGGCILAHAPGSGKTFLI
ISFVHSFLAKYPAGRPLIILPKGILSTWRTEFLHWQVDDIPLYDFYSSKADKRSEQLKVL
NLWEESRSILLLGYQQFACIVSDHTSDTEAIMCQEKLLKVPSLVILDEGHTPRNEETDLL
TSLENIRTPRKVVLSGTLFQNHVREVFNILKLVRSKFLKMDKSRAIVNCILSKVDLMGKS
ARSKNISDKDFFDLVQEHLQKDGNDKMRAVIIQNLRELTADVLHYYQGKLLDELPGIVDF
TVFLNMSSKQEHIIKGLDGINKFAKRSRCNAVSLHPCLKNANKADADDGNVTNRKIGSII
SGIDINDGVKAKFVHNLLSLSEATGGKVLVFSQYVRSLIFLEKLVSRMKGWKSEVHIFRV
TGGSTQDQREQAVHRFNNSPDARVFFGSIKACGEGISLVGASRIVILDVHENPSVMRQAI
GRAYRPGQSKMVYCYRLVAADSPEEDDHHTAFKKERVSKLWFEWNELCSSDDFELATVDV
SDSEDRFLESSALKQDIKALLKR
NT seq 2772 nt   +upstreamnt  +downstreamnt
atggattctgatagctgcaaaaggcggaagcatgaaagcggtcacgatagctcttcacgg
gtccagtcccagtcaagcatccttagtcgtaacagaattttgtgtcatcagttgcttgaa
caatgcgatgacttgaagtatgggagctccacgaatgattacaaggcaatcagtatgaag
cggcttgaacttatcagcatcctacaaaagctgcaagaagtacctatccagttgccatat
gccagtccactcaagtcatcagaaacaaatcgccttgtgcaagatggaagaaactctagt
tgtcgtaatataattgacttggattcagacaatgatgaagattatacttttgctaatgtg
gacaatattggtgctaacacaacagttgttttagttgattctgatgacggggacagtgtt
gcatcctttgtagatgaaaaatcatctgattccaagcaaaatgcgaattatattgaagaa
agcgttctgcctgagcagcatgcccaacaacaggaaatctccatgctggataatgaaaac
atcagttctgaagcacaagcagttaagaaaggaaaggatagtatggacatcaacgatgtt
atttacaacaagagtggtcatgaggagataggggaagaggaagcacaagctgaaaatgtc
cagataaaagggaacttaaagaaagagatcatctctgttgcttctgatgaactagcttgt
gaagttatgcgcagtcagtcaccaaccaatggaaattttgatcaatatgacaacagcagc
ccagttgatgagctggaaggactttggatggacatgtaccttgcaatggcatgttcaaag
actgttggaagcgatcataacattgtcccatcagagaattcttgtgaacaagcagaggat
gaatgccagcacgatttcctgatgaaagatgatttgggcattgtctgtcgtgtttgtggt
ctgatccagcaacgtattgaaaatatttttgagtaccagtggaaaaagcggaagcaatcg
tacagagcacgtccctcagaacacagaaattctagtgatgcagatgcaattgacaaaact
tcaggagctattctcgaagtggtccctgatgctctatgcctccaccctcaacattcacag
catatgaaacctcaccaagtggaaggtttcaatttcctggtcaagaacttggcagatgag
aacaaccctggtggctgtattctggcacatgcaccaggttctgggaagacttttttgata
attagttttgtccacagcttcctagccaaataccctgctggaaggccattgattattctc
ccaaagggaattctatcaacatggagaaccgaatttcttcattggcaagttgatgatatt
cctttgtatgacttctactcctccaaagctgacaaacggtctgaacaactcaaagttttg
aacttgtgggaggagagcagaagtatcctgttgttgggctatcaacagtttgcatgcata
gtttctgatcacacttctgatacagaagccatcatgtgccaggagaagttactgaaggtc
ccgagccttgtcattctagatgaaggacacactccaagaaacgaggaaacagacttgctc
acttcactggaaaacatccgaactcctcgtaaagtagtcctctcaggaaccttgttccag
aaccatgtgagggaggttttcaacattttgaaacttgtccgatccaaattcttgaagatg
gacaaatctcgtgctattgttaactgcatactaagcaaggtggacttgatggggaagagt
gcacgatcaaagaatatctcagataaggacttctttgatttggttcaagaacaccttcag
aaagatggaaatgacaagatgagagcggtgattatccaaaatcttcgtgagctaactgca
gatgtgcttcactattaccaaggcaagcttttggatgagctacctggaattgtggacttt
acagtttttctcaatatgagtagcaaacaggaacatattattaagggcttggatggaata
aataaatttgcgaaacgctcgagatgcaatgccgtttctcttcatccatgcttgaagaat
gccaataaagctgatgcagatgatggaaatgtcaccaataggaagatcggttccatcata
tccggaattgatatcaacgacggggtgaaggccaagtttgtacacaatctgttgtctctt
tcagaagccacgggagggaaggtactcgtgttcagccagtatgtgcgctctttgattttc
ttggaaaagctggtcagtagaatgaaaggatggaaatcagaggtacatattttcagggtt
actggtggctcaactcaggatcagcgtgagcaagcagtccatagattcaacaactcacca
gatgctagagtcttctttggctccatcaaggcatgtggcgagggcatctccctcgttggc
gcgtctcgtatagtgatcttggatgtccatgagaacccttcagtgatgcgccaggcgatt
ggccgtgcctataggccaggacagtctaaaatggtgtattgctaccgcctcgtcgctgct
gattcgcctgaggaggatgatcaccacaccgccttcaagaaagaacgagtgtcgaagctg
tggttcgagtggaatgagctctgcagcagtgatgattttgagctcgcaacggtggatgtt
tcagatagcgaggacaggttccttgaaagctctgcattgaaacaagatatcaaagcccta
ttaaaaaggtga

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