KEGG   Oryza sativa japonica (Japanese rice): 107277317
Entry
107277317         CDS       T01015                                 
Name
(RefSeq) ubiquitin-ribosomal protein eL40 fusion protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    107277317
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107277317
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    107277317
   04121 Ubiquitin system [BR:osa04121]
    107277317
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    107277317
  Archaea
    107277317
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   107277317
SSDB
Motif
Pfam: Ribosomal_L40e ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 107277317
NCBI-ProteinID: XP_066168789
LinkDB
Position
7:join(18580316..18580415,18580795..18580834,18634642..18634809,18635428..18635494,18635903..18635935)
AA seq 135 aa
MQIFVRTLDECITLEVEGSDTIGDVKVKIHDKNGIPADDQRLMHAGSRALDDRRTLVDYD
IQESTLHLAVRLRGGSRGHYPCLAPGLLALARKYIEMKMICRKCYARLPPRSTNCRKKKC
GHSNKLRRKKKLKDY
NT seq 408 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaggacgctggacgagtgcatcacgctggaggtcgagggcagcgac
accatcggcgacgtcaaggtcaagatccacgacaagaacggcatcccggcggacgaccag
cggctgatgcacgccgggagtcgggcactggatgatcgccggacactggtcgattacgac
atccaggagtccacgctccacctcgccgtccgcctccgcggcggcagccgcggccactat
ccctgcctcgctcccggcctcctcgccctcgcgcgcaagtacatcgagatgaagatgatc
tgccgcaagtgctatgcacgccttccccccaggtctacaaactgccgcaagaagaagtgt
ggtcacagcaacaagctaaggcgtaagaaaaagttaaaggactactga

KEGG   Oryza sativa japonica (Japanese rice): 107277614
Entry
107277614         CDS       T01015                                 
Name
(RefSeq) ubiquitin-ribosomal protein eS31 fusion protein
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    107277614
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107277614
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    107277614
   04121 Ubiquitin system [BR:osa04121]
    107277614
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:osa04147]
    107277614
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    107277614
  Archaea
    107277614
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   107277614
Exosome [BR:osa04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   107277614
  Exosomal proteins of colorectal cancer cells
   107277614
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ribosomal_S27 Ubiquitin_2
Other DBs
NCBI-GeneID: 107277614
NCBI-ProteinID: XP_015614163
UniProt: Q9FWV0 A0A8J8YEW6
LinkDB
Position
10:complement(19354181..19354624)
AA seq 147 aa
MSTVMTQIFVKGLTGKTTALRMEPSDTVESVKVKLVDKEGLPPDQQPLIFQGHQLDDGHT
LIYYGIQEESTLHLLGRICGGGGGNKKRKKKAYATPKKGKHEHRKEELAVLRHYRVDDVM
GKVERLRLMCPNPECKDVGALMAKHHD
NT seq 444 nt   +upstreamnt  +downstreamnt
atgtcgacggtgatgacgcagatatttgtgaaagggctgacagggaagacgacggctctg
aggatggagccgtcggatacggtggagagcgtgaaggtgaagctcgtggacaaggagggg
cttccgccagaccagcagccgctcatcttccaggggcatcagctggacgacggccacacg
ctaatctactatggtattcaggaggagtcgacgctgcacctcctcggtcgcatctgtggt
ggcggcggcggcaacaagaagcgaaagaagaaggcgtacgcgacacctaagaagggaaag
catgagcaccgcaaggaagagcttgcggtgctccgtcactatcgtgtcgatgacgtgatg
gggaaggtggagaggctacgactgatgtgtcctaacccagagtgcaaagacgttggcgca
cttatggcgaagcaccacgactga

KEGG   Oryza sativa japonica (Japanese rice): 136351794
Entry
136351794         CDS       T01015                                 
Name
(RefSeq) ubiquitin-ribosomal protein eL40z fusion protein-like
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    136351794
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    136351794
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    136351794
   04121 Ubiquitin system [BR:osa04121]
    136351794
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    136351794
  Archaea
    136351794
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   136351794
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 DUF2604 TBK1_ULD Plexin_RBD Rad60-SLD_2 Ubiquitin_5 Dsc3_N OTU1_UBXL
Other DBs
NCBI-GeneID: 136351794
NCBI-ProteinID: XP_066160244
LinkDB
Position
9:join(23059799..23059901,23060520..23060727,23060896..23060962,23061334..23061375)
AA seq 139 aa
MQIFVKTLTGKSITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGSRGGYTIQEPSLLLLALKYNEKKMVCRKCYARLPARSTNCRKKK
CGHTNQIRPKKRFISKTAN
NT seq 420 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagacgctgacggggaagtcgatcacgctggaggtggagagcagc
gacaccatcgacaacgtcaaggccaagatccaggacaaggaaggtatccctccggaccag
cagcgcctcatcttcgcggggaagcagctggaggatggccgcaccctggccgactacaac
atccagaaggagtcgacgctgcacctggtgctccgcctccgcggcggcagcaggggcggc
tacaccatccaggagcccagcctcctgctcctggcgctcaagtacaacgagaagaagatg
gtctgccgcaagtgctacgcacgccttcccgccaggtctaccaactgccgcaagaagaag
tgtggccacaccaaccagataaggccaaagaagaggtttatatccaagactgccaactga

KEGG   Oryza sativa japonica (Japanese rice): 4326977
Entry
4326977           CDS       T01015                                 
Symbol
OsJ_01558, RPS27AA
Name
(RefSeq) ubiquitin-ribosomal protein eS31z fusion protein
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4326977 (OsJ_01558)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4326977 (OsJ_01558)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4326977 (OsJ_01558)
   04121 Ubiquitin system [BR:osa04121]
    4326977 (OsJ_01558)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:osa04147]
    4326977 (OsJ_01558)
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    4326977 (OsJ_01558)
  Archaea
    4326977 (OsJ_01558)
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4326977 (OsJ_01558)
Exosome [BR:osa04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   4326977 (OsJ_01558)
  Exosomal proteins of colorectal cancer cells
   4326977 (OsJ_01558)
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 Dsc3_N Plexin_RBD TBK1_ULD DUF2604 Ubiquitin_5 Ogr_Delta OTU1_UBXL
Other DBs
NCBI-GeneID: 4326977
NCBI-ProteinID: NP_001395951
LinkDB
Position
1:complement(12689353..12689820)
AA seq 155 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKQKHKHKKVKLAVLQFYKVDDATGKVTRLRK
ECPNAECGAGTFMANHFDRHYCGKCGLTYVYNQQA
NT seq 468 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagaccctgacggggaagacgatcacgctggaggtggagtcctcg
gacaccatcgacaacgtgaaggcgaagatccaggacaaggaggggatcccgcccgaccag
cagcggctcatcttcgccggcaagcagctggaggacgggcgcaccctcgccgactacaac
atccagaaggagtcgaccctccacctggtgctccgcctccgcggcggcgccaagaagcgc
aagaagaagacgtacaccaagcccaagaagcagaagcacaagcacaagaaggtgaagctc
gccgtgctccagttctacaaggtggacgacgccaccggcaaggtcacccgcctccgcaag
gagtgccccaacgccgagtgcggcgccggcaccttcatggccaaccacttcgaccgccac
tactgcggtaagtgcggcctcacctacgtctacaaccagcaggcttag

KEGG   Oryza sativa japonica (Japanese rice): 4328390
Entry
4328390           CDS       T01015                                 
Name
(RefSeq) polyubiquitin
  KO
K08770  ubiquitin C
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4328390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    4328390
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4328390
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ubiquitin_2 TBK1_ULD Rad60-SLD_2 Dsc3_N Ubiquitin_5 DUF2604
Other DBs
NCBI-GeneID: 4328390
NCBI-ProteinID: XP_015624714
UniProt: B9F359 Q6H7T6
LinkDB
Position
2:complement(3349101..3350474)
AA seq 457 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGQ
NT seq 1374 nt   +upstreamnt  +downstreamnt
atgcagatctttgtgaagacattgaccggcaagactatcaccctcgaggtggagtcctct
gacaccatcgataatgtcaaggctaagatccaagataaggagggcatccccccggaccag
cagcgtctcatcttcgctggcaagcagctggaggatggcaggacccttgctgactacaac
atccagaaggagtcgacccttcaccttgtcctccgcctccgtggtggcatgcagatcttt
gtcaagactctgaccggcaagactatcacccttgaggtggagtcttctgacaccatcgac
aacgtcaaggccaagatccaggacaaagagggcatccccccagaccagcagcgtctcatc
ttcgccggcaagcagctggaggatggcaggacccttgctgactacaacatccagaaggag
tccaccctccaccttgtcctccgcctccgtggtggcatgcagatctttgtcaagacactg
accggcaagaccatcaccctcgaggtggaatcttctgacaccatcgacaacgtcaaggcc
aagatccaggacaaggagggcattcccccggaccagcagcgtctcatctttgccggcaag
cagcttgaggacggcaggacccttgctgactacaacatccagaaggagtcaacgcttcac
cttgtcctccgtctcaggggaggcatgcaaatcttcgtgaagactctgaccggcaagacc
atcaccctcgaggtggagtcttctgataccatcgacaatgtcaaggccaagatccaggac
aaggagggcattcccccggaccagcagcgcctcatctttgctggcaagcagctggaggat
ggcaggacccttgctgactacaacatccagaaggagtccaccctccaccttgtgctccgc
cttcgtggtggtatgcagatctttgtcaagaccctcacaggcaagaccatcaccctggag
gttgagagctcggacaccatcgacaacgtcaaggccaagatccaggacaaggagggcatc
cccccagaccagcagcgtctcatcttcgccggcaagcagctcgaggatggccgcaccctc
gccgactacaacatccagaaggagtctaccctccacctggtgcttcgtctccgtggtggt
atgcagatcttcgtgaagaccttgactgggaagaccatcactttggaggttgagagctcc
gacaccattgataatgtgaaggccaagatccaggacaaggaggggattcccccagaccag
cagcgtctgatcttcgctggcaagcagctggaggatggacgcaccctcgccgactacaac
atccagaaggagtccaccctccacctggtgctccgcctccgtggtggtcagtaa

KEGG   Oryza sativa japonica (Japanese rice): 4332169
Entry
4332169           CDS       T01015                                 
Symbol
OJ1175C11.2, OsJ_30399, UBQ1
Name
(RefSeq) ubiquitin-ribosomal protein eL40z fusion protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4332169 (OJ1175C11.2)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4332169 (OJ1175C11.2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4332169 (OJ1175C11.2)
   04121 Ubiquitin system [BR:osa04121]
    4332169 (OJ1175C11.2)
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    4332169 (OJ1175C11.2)
  Archaea
    4332169 (OJ1175C11.2)
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4332169 (OJ1175C11.2)
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 zf-C4pol TBK1_ULD DUF2604 Ubiquitin_5 Dsc3_N Plexin_RBD OTU1_UBXL
Other DBs
NCBI-GeneID: 4332169
NCBI-ProteinID: NP_001389050
LinkDB
Position
3:complement(join(7150796..7150825,7151101..7151167,7152676..7152865,7152957..7153059))
AA seq 129 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
LRPKKKIKN
NT seq 390 nt   +upstreamnt  +downstreamnt
atgcaaatcttcgtgaagaccctgactgggaagaccatcaccctcgaggtggagagcagc
gacaccatcgacaatgtcaaggctaagatccaggacaaggagggaatcccgccggaccag
cagcggctgatcttcgccgggaagcagctggaggacggacgcaccctggctgactacaac
atccagaaggagtccaccctccacctcgtcctcaggctccgtggcggtatcatcgagccg
tcgcttcaggcgcttgcccgcaagtacaaccaggacaagatgatctgccgcaaatgctat
gcgcgcctgcaccctagggctgtcaactgccgcaagaagaagtgtggtcacagcaaccag
ctgaggcccaagaagaagatcaagaactag

KEGG   Oryza sativa japonica (Japanese rice): 4332312
Entry
4332312           CDS       T01015                                 
Name
(RefSeq) ubiquitin-ribosomal protein eL40A fusion protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4332312
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4332312
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4332312
   04121 Ubiquitin system [BR:osa04121]
    4332312
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    4332312
  Archaea
    4332312
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4332312
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 TBK1_ULD Ubiquitin_5 Dsc3_N DUF2604 OTU1_UBXL
Other DBs
NCBI-GeneID: 4332312
NCBI-ProteinID: XP_015630915
UniProt: A0A9K3Y723 A0A5S6R6S5
LinkDB
Position
3:join(8460150..8460252,8460429..8460624,8461385..8461451,8461847..8461891)
AA seq 136 aa
MQIFVKTLTGKTITLEVENSDAVANVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGHIWIEPSLRVLAYKHNINKMVCRKCYATLPPRATNCRKKKCGHS
NQLRPKKVRWCRYFNF
NT seq 411 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagacgctgacggggaagaccatcaccctcgaggtggagaacagc
gacgccgtcgccaacgtcaaggccaagatccaggacaaggaaggtatcccgccggaccag
cagcgcctcatcttcgccgggaagcagctggaggatggccgcacgctggccgactacaac
atccagaaggagtccacgcttcacctggtgcttcgcctacgcggcggccacatctggatc
gagccctcgctcagggtcctcgcctacaagcacaacatcaacaagatggtctgcaggaag
tgctatgcaactctgcctcccagggctacaaactgccgcaagaagaagtgtggccacagc
aatcagctgaggccaaagaaggtgaggtggtgcaggtacttcaacttctga

KEGG   Oryza sativa japonica (Japanese rice): 4337080
Entry
4337080           CDS       T01015                                 
Symbol
OsJ_16259, rubi3, UBQ3
Name
(RefSeq) polyubiquitin 3
  KO
K08770  ubiquitin C
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4337080 (OsJ_16259)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    4337080 (OsJ_16259)
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4337080 (OsJ_16259)
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ubiquitin_2 TBK1_ULD Rad60-SLD_2 Dsc3_N Ubiquitin_5 DUF2604
Other DBs
NCBI-GeneID: 4337080
NCBI-ProteinID: NP_001389364
LinkDB
Position
4:32471437..32472582
AA seq 381 aa
MQIFVKTLTGKTITLEVEFSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
ADYNIQKESTLHLVLRLRGGL
NT seq 1146 nt   +upstreamnt  +downstreamnt
atgcagatattcgttaagaccctcactggcaagaccatcaccttggaggttgagttctcc
gatacgattgacaatgtgaaggctaagattcaggacaaggagggcatccctccggaccag
caacgccttatcttcgctggcaagcagcttgaggatgggcgtactctcgcggattataac
atccagaaggagtccaccttgcaccttgtcctccgccttcgtggaggcatgcaaatattc
gtgaagaccctcaccggcaagaccattaccctggaggtcgagtcctccgacacgatcgat
aatgtgaaggccaagatccaggacaaggagggaatcccaccagaccagcagcgtctcatc
tttgctgggaagcagctcgaggatggccgcacccttgcagactacaacatccaaaaggaa
tccaccctgcaccttgtcctgcgcctccggggcggtatgcagatctttgtgaagaccctt
actggcaagacgatcaccttggaggttgagtcctctgacacgatcgacaatgtgaaggcc
aagatccaggacaaggagggtattccaccagaccagcagcggctcatcttcgctggcaag
cagcttgaggacggccgcacccttgctgactataacatccagaaggagtccaccttgcac
ttggtcctccgccttcgtggaggtatgcagatcttcgtgaagaccctcaccggcaagacc
atcaccctggaggttgagtcgtctgacacgatcgacaatgtgaaggccaagatccaggac
aaggagggtattccaccagaccagcagcgcctcatcttcgctggcaagcagcttgaggat
ggtcgcacccttgcagattacaacatccagaaggagtccaccctgcaccttgtcctgcgc
cttcgtggaggtatgcagatcttcgtgaagaccctcactggcaagaccatcactctggag
gttgagtcctctgacaccatcgacaacgtgaaggccaagatccaggataaggagggcatc
cctccagaccagcagcgcctcatcttcgccggcaagcagctcgaggatggccgcaccctt
gccgactataacatccagaaggagtccaccctgcaccttgtcctgcgcctccgtggtggt
ctctga

KEGG   Oryza sativa japonica (Japanese rice): 4337883
Entry
4337883           CDS       T01015                                 
Symbol
OsJ_17209, RPS27AB, UBQ6
Name
(RefSeq) ubiquitin-ribosomal protein eS31y fusion protein
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4337883 (OsJ_17209)
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4337883 (OsJ_17209)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4337883 (OsJ_17209)
   04121 Ubiquitin system [BR:osa04121]
    4337883 (OsJ_17209)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:osa04147]
    4337883 (OsJ_17209)
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    4337883 (OsJ_17209)
  Archaea
    4337883 (OsJ_17209)
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4337883 (OsJ_17209)
Exosome [BR:osa04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   4337883 (OsJ_17209)
  Exosomal proteins of colorectal cancer cells
   4337883 (OsJ_17209)
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 Dsc3_N Plexin_RBD TBK1_ULD DUF2604 Ubiquitin_5 IBR Fer2_3 OTU1_UBXL
Other DBs
NCBI-GeneID: 4337883
NCBI-ProteinID: NP_001407020
LinkDB
Position
5:3554151..3554618
AA seq 155 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRK
ECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA
NT seq 468 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagaccctgacggggaagaccatcacgctggaggtggagtcctcg
gacaccatcgacaacgtgaaggccaagatccaggacaaggaagggatccccccggaccag
cagcgcctcatcttcgccggcaagcagctcgaggatggccgcaccctcgccgactacaac
atccagaaggagtccaccctccacctcgtgctccgcctccgcggcggcgccaagaagcgc
aagaagaagacgtacaccaagcccaagaagatcaagcacaagcacaagaaggtgaagctc
gccgtgctccagttctacaaggtggacgacgccaccggcaaggtcaccaggctcaggaag
gagtgccccaacaacgactgcggcgcgggcaccttcatggccaaccacttcgatcgccac
tactgcggcaagtgcggcctcacctacgtctacaaccagaaggcctag

KEGG   Oryza sativa japonica (Japanese rice): 4343261
Entry
4343261           CDS       T01015                                 
Name
(RefSeq) ubiquitin-ribosomal protein eL40 fusion protein
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4343261
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4343261
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:osa03011]
    4343261
   04121 Ubiquitin system [BR:osa04121]
    4343261
Ribosome [BR:osa03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    4343261
  Archaea
    4343261
Ubiquitin system [BR:osa04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   4343261
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 TBK1_ULD CFAP298 DUF2604 Ubiquitin_5 Plexin_RBD Dsc3_N OTU1_UBXL
Other DBs
NCBI-GeneID: 4343261
NCBI-ProteinID: XP_015646154
UniProt: A3BJV9
LinkDB
Position
7:complement(join(18358674..18358715,18359697..18359763,18359887..18360094,18360292..18360394))
AA seq 139 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGGRPGYPMIEPNLLALARSKMEKKMICRKCYARLPYKATNCRKKK
CGHTNELRPKKKLVSKLSV
NT seq 420 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaagaccctgacggggaagaccatcaccctcgaggtcgagagcagc
gacaccatcgacaatgtcaaggccaagatccaggacaaggaagggatcccgccggaccag
cagcggctgatcttcgccgggaagcagctggaggacggccggacgctggccgactacaac
atccagaaggagtcgacgctgcacctcgtgcttcgcctccgcggcggcggccgcccgggc
tacccgatgatcgagcccaacctcctcgccctcgcccgcagcaagatggagaagaagatg
atctgccgcaagtgctacgcgcgccttccctacaaggctaccaactgtcgcaagaagaaa
tgcggccacaccaacgagctgaggccaaagaagaagctggtatccaagctttctgtttga

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