Oryza sativa japonica (Japanese rice): 107277796 Help Entry 107277796         CDS       T01015                                  Name (RefSeq) probable CCR4-associated factor 1 homolog 11   KO K12581   CCR4-NOT transcription complex subunit 7/8 Organism osa  Oryza sativa japonica (Japanese rice) Pathway osa03018   RNA degradation Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     107277796  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     107277796 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      107277796   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      107277796 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CAF1 Motif Other DBs NCBI-GeneID:  107277796 NCBI-ProteinID:  XP_066168439 LinkDB All DBs Position 7:complement(3766997..3768031) Genome browser AA seq 344 aa AA seqDB search MSSLSSLFSYSPPGTAKYAAALASPSQQVSTTMPELETEGELKTLPAPMTIETTAAAAAA ARSPEIVKVRSVWAHNLDEEANLIESLFPSFRLAAVDTEFPGTVHRPSAPAYTLTRKQKY ALLKKNVDELHLVQLGLTLFDAGGRLPDLGTGGAARYVWEFNFREFDLRRHAHAPESIAL LRSKGVDFDRTRRGGVDAAAFGPRLRRWLRAGLGRAGLVTFSGAYDLAYMLKMLYGGGGG GYRLPGDAATFEFVVRAVIGRTLYDVGKMARHCPGDMRGGLERVAGKLGVRRAVGEAHQA GSDSLLTSQMFMRMRERYFDDQDALTAVAGINFGYLNFTSCEYT NT seq 1035 nt NT seq  +upstreamnt  +downstreamnt atgtcgtcgctgtcgtcgctgttctcctactcaccgccggggacggccaagtacgcggcg gcgctggcgtcgccgtcgcagcaggtgtccacgacgatgccggagctggagacggagggg gagctgaagaccctgccggcgccgatgacaatcgagacgacggcggcggcggcggcggcg gctcggtcgccggagatcgtcaaggtgcggtcggtgtgggcgcacaacctcgacgaggag gccaacctgatcgagtcgctgttcccgagcttccggctcgccgccgtcgacaccgagttc cccggcacggtgcaccggccgtcggcgccggcgtacacgctgacgcgcaagcagaagtac gcgctcctcaagaagaacgtcgacgagctccacctagtccagctcggcctgacgctgttc gacgccggcggccggctgccggacctcggcaccggcggcgccgcgcgctacgtgtgggag ttcaacttccgggagttcgacctccggcgacacgcgcacgcgccggagtcgatcgcgctg ctgcgttccaagggcgtcgacttcgaccggacgcggcggggcggcgtcgacgcggcggcg ttcggcccgcggctgcgcaggtggctgcgcgccggcctcggccgcgccgggctcgtcacg ttcagcggcgcctacgacctcgcctacatgctcaagatgctctacggcggcggcggcggc ggctaccggctgcccggcgacgcggcgacgttcgagttcgtggtgagggcggtgataggg aggacgctgtacgacgtgggcaagatggcgcggcactgccccggcgacatgcgcggcggg ctggagcgcgtcgccgggaagctcggcgtgcggcgcgccgtcggcgaggcgcaccaggcc ggctctgacagcctgctgacgtcgcagatgttcatgcggatgagggaacgctacttcgac gaccaagacgcgctcacggccgtcgccggcattaattttggatatttaaactttacctcc tgtgaatatacttag

Oryza sativa japonica (Japanese rice): 112936656 Help Entry 112936656         CDS       T01015                                  Name (RefSeq) probable CCR4-associated factor 1 homolog 11   KO K12581   CCR4-NOT transcription complex subunit 7/8 Organism osa  Oryza sativa japonica (Japanese rice) Pathway osa03018   RNA degradation Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     112936656  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     112936656 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      112936656   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      112936656 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CAF1 Motif Other DBs NCBI-GeneID:  112936656 NCBI-ProteinID:  XP_025876655 LinkDB All DBs Position 10:complement(1531616..1532443) Genome browser AA seq 275 aa AA seqDB search MHAAAAPAPPLWLRTMTAANLDSEMGLIGEMMVQYPYVTIDVEFAGVVHHPPYTGSRPTP DEIYAALKSNVDEVPAVQIGITLSDAEGNLPTRSSSSPEQEIAWEVVFSDFDAGRDPHVV DSVEFLKNQGIDFDLARQIGVTSTAFGEKLLAILPPPSRRGELTWSAFGGAYDMGYLLKM LTGGQPLPETRQQFMQLVKSRLGGGRIFDSKYLVEHDRQDLRNAGLRHTADVLGVRQQEG VKMLAGHKSVVAAAIFATIRSQGVHLLHGVIDGIL NT seq 828 nt NT seq  +upstreamnt  +downstreamnt atgcatgccgccgcggcgccggcgccgccgctctggctccggaccatgacggcggcgaac ctcgactcggagatgggactgatcggcgagatgatggtgcagtacccctacgtcaccatc gacgtcgagttcgccggcgtcgtccaccacccgccttacaccggcagccgccccacgccg gacgagatctacgccgccttgaagtcgaacgtcgacgaggtgcccgccgtccagatcggg atcaccctctccgacgcggagggcaacctccccacgagatcttcgtcttctcctgagcag gagatcgcgtgggaggtcgtcttctccgacttcgacgccggccgcgacccccacgtcgtc gactccgtcgagttcctcaaaaaccaaggcatcgacttcgacctcgcgcggcagatcggc gtcacctccacggcgttcggagagaagctgctcgccatcctgccgccgccgtcgcggcgt ggcgagctcacctggtcggcgttcggcggcgcctacgacatgggttacctgctcaagatg ctcaccggcggccagccgttgccggagacgagacaacagtttatgcaacttgtcaaatct cggctaggcggcggccggatatttgattcaaaatatttggtagaacacgaccgtcaagat ctgcgcaatgccgggttgaggcacacggcagatgttcttggcgtgagacagcaggagggg gtgaagatgctggctgggcacaagagcgtggtagcagctgccatctttgccacaatccgg tctcagggtgttcacctcctgcatggagttatcgatggaattttatag

Oryza sativa japonica (Japanese rice): 112936657 Help Entry 112936657         CDS       T01015                                  Name (RefSeq) probable CCR4-associated factor 1 homolog 11   KO K12581   CCR4-NOT transcription complex subunit 7/8 Organism osa  Oryza sativa japonica (Japanese rice) Pathway osa03018   RNA degradation Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     112936657  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     112936657 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      112936657   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      112936657 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CAF1 Motif Other DBs NCBI-GeneID:  112936657 NCBI-ProteinID:  XP_025876666 LinkDB All DBs Position 10:1773383..1774126 Genome browser AA seq 247 aa AA seqDB search MSLIRSLMPTFPFVAVDTQFPGVVHPHPRGAGVTADDRYAAVRANADELCLLQLGITLSA ADGRLPVDGALVEFMWDFDFAGFDARYHRHAPESVQFLRAQGFDFEAARLAGVPALAFAA ELAASGILGLRGVTWVAFGGMYDVAFLLRLATGGAPLPATRLGFLAQVGAVFGTQVFDAK HMASLLHMHGGLAAVGGMLRLPPQLPRRHMAGQNSVMAIQLFMELRRRFNDLGGSLHSCS LKIEGLT NT seq 744 nt NT seq  +upstreamnt  +downstreamnt atgtcgctcatccggtcgctgatgccgaccttccccttcgtcgccgtcgacacccagttc cccggcgtcgtccacccccacccgagaggggcgggggtcaccgccgacgatcggtacgcg gcggtgagggcgaacgccgacgagctctgcctgctacagctcgggatcaccctctccgcc gccgacggccgtctccccgtcgacggcgccctcgtcgagttcatgtgggatttcgacttt gccggtttcgacgcccgctaccaccgccacgcgccggagtccgtacagttcttgagggcc caggggttcgacttcgaggccgcgcggctcgccggcgtgcccgccctcgcgttcgctgcg gagctcgccgcctccggcatcctcggcctccgtggcgtgacgtgggtcgccttcggcggc atgtacgacgtcgcgttcctcctcaggctggccaccggcggcgcgccgctgccggcgacg aggctgggcttcctggcgcaggtcggcgccgtcttcggcacccaggtgttcgacgccaag cacatggcgtcgctgctccacatgcacggcggcctcgccgccgtcggagggatgctccgg ctgccgccgcagctgcctcgccgccacatggccgggcagaacagcgtcatggcgatccag ctcttcatggagctgaggagaaggttcaatgacctgggaggcagccttcacagctgctcg ctcaagatcgaaggcctgacttga

Oryza sativa japonica (Japanese rice): 4331006 Help Entry 4331006           CDS       T01015                                  Name (RefSeq) probable CCR4-associated factor 1 homolog 7   KO K12581   CCR4-NOT transcription complex subunit 7/8 Organism osa  Oryza sativa japonica (Japanese rice) Pathway osa03018   RNA degradation Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     4331006  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4331006 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      4331006   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      4331006 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CAF1 Motif Other DBs NCBI-GeneID:  4331006 NCBI-ProteinID:  XP_015625500 UniProt:  Q0DWT7 B9F411 LinkDB All DBs Position 2:34350449..34351336 Genome browser AA seq 295 aa AA seqDB search MPMSDPTAAVIPKPGGIGVGGGGGDDEEPVEIREVWADNLEEEFALIRDVVDEFPFVAMD TEFPGIVCRPVGAFRSPADYNYATLKANVDMLHLIQLGLTFSSPRGELPALGPGRRRCVW QFNFREFDDARDIFASDSIELLRRSGIDFRRNSERGVDARRFAELLMSSGVVLNDSVYWV TFHAGYDFGYLLKILTCSSLPDTQAGFFKLMKIYFPTVYDIKHLMKFCNSLHGGLNKLAE LLDVERVGESHQAGSDSLVTSCAFWKLKDSFFAGSTEKYAGVLYGLNAENVVSAH NT seq 888 nt NT seq  +upstreamnt  +downstreamnt atgccaatgtcggatcccacggcggcggtcatccccaagccggggggcatcggcgtcggc ggcggaggcggcgacgacgaggagccggtggagatccgggaggtgtgggcggacaacctc gaggaggagttcgcgctgatccgcgacgtcgtcgacgagttccccttcgtcgccatggac acggagttccctggcatcgtgtgccgccccgtcggcgccttccgctccccggccgactac aactacgccacgctcaaggccaacgtcgacatgctccacctcatccagctcggcctcacc ttctccagcccgcgcggcgagctccccgcgctcggcccaggccgccgccgatgcgtatgg cagtttaatttccgcgagttcgacgacgcccgcgacatcttcgcctctgactccattgag ctcctgcgccgtagcggcatcgacttccgccgcaactccgagcgcggcgttgacgctcgc cggttcgcggagctgctcatgtcctctggcgtcgtgcttaacgattctgtatattgggtc accttccacgcgggctacgacttcgggtacctgcttaagatcctcacatgcagcagccta ccggacacgcaagccggcttctttaagctcatgaagatatatttccccaccgtgtatgac atcaagcacctcatgaagttctgcaatagcctgcacggtgggctgaacaagctcgccgag ctccttgacgtggagcgcgtcggagagtcccaccaggccggttcagatagcttggtcact tcatgcgcgttctggaagctcaaggattcgttcttcgctggctctaccgagaaatatgct ggagtgctgtatgggctcaatgcggagaatgttgtcagtgcgcattga

Oryza sativa japonica (Japanese rice): 4337457 Help Entry 4337457           CDS       T01015                                  Name (RefSeq) probable CCR4-associated factor 1 homolog 11   KO K12581   CCR4-NOT transcription complex subunit 7/8 Organism osa  Oryza sativa japonica (Japanese rice) Pathway osa03018   RNA degradation Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     4337457  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4337457 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      4337457   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      4337457 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CAF1 Motif Other DBs NCBI-GeneID:  4337457 NCBI-ProteinID:  XP_015635906 UniProt:  Q7XPU5 A0A8J8XY44 LinkDB All DBs Position 4:35500805..35501794 Genome browser AA seq 329 aa AA seqDB search MPSEFVAARKKPPPELLFAAGRKKQQPPPPGMAFVPSEFAAAGVGRKRQPAPPVEIRRVW AHNVEEEFRIIRNAIDHFPYVSMDTEFPGVIHRPTKHPALLTAGDRYDLLRRNVDALHLI QVGITLAASPTAAPALAFEINLSDFDQRVHRHAAESVQLLAEHGVDLAAHRRHGVRASAL APLLMSSGLVCSHGAVKWVTFHSAYDFAYLVKLLMGRKLPRSMAEFLNLVRVFFGDEVYD VKHMMRHCGGELYGGLERVAAALQVKRAAGRCHQAASDSLLTWDVFRRMRELYFLKHGVE AYQGVLFGLELDMDMPSNKTPSLPLVAAR NT seq 990 nt NT seq  +upstreamnt  +downstreamnt atgccgtcagagttcgtcgccgccaggaagaagccgccgccggagttgttgttcgccgcc ggtcggaagaagcagcagccgccgccgcctggcatggcgttcgtgccgtcggagttcgcc gccgccggcgttggcaggaagaggcagcctgcgccgccggtggagatacgccgggtgtgg gcgcacaacgtggaggaggaattccggatcatccgcaacgcgatcgatcacttcccgtac gtgtccatggacacggagtttcccggcgtgatccaccgcccgaccaagcaccccgccctg ctcaccgccggcgaccggtacgacctcctccgccgcaacgtggacgcgctccacctcatc caggtgggcatcaccctcgccgcgtcccccaccgcggcgcccgcgctcgccttcgagatc aacctctccgacttcgaccagcgcgtccaccgccacgccgccgagtccgtccagctgctg gcggagcacggcgtggacctcgccgcgcaccgcaggcacggcgtcagggcgagcgcgctg gcgccgctgctcatgtcgtcgggcctcgtctgctcccacggcgccgtcaagtgggtcacc ttccactccgcctacgacttcgcctacctggtcaagctcctcatggggcggaagctgccg aggtccatggccgagttcctgaacctggtgcgcgtcttcttcggcgacgaggtgtacgac gtgaagcacatgatgcggcactgcggcggcgagctgtacggcgggctggagcgcgtggcg gcggcgctgcaggtgaagcgcgcggcggggcggtgccaccaggccgcctccgacagcttg ctcacctgggacgtcttccggcggatgcgggagctctacttcctcaagcatggcgtcgag gcctaccaaggcgtgctcttcggcctggagctcgacatggacatgcccagcaacaaaaca ccctcgctgccgctggtggcagcgagatga

Oryza sativa japonica (Japanese rice): 4345683 Help Entry 4345683           CDS       T01015                                  Name (RefSeq) probable CCR4-associated factor 1 homolog 7   KO K12581   CCR4-NOT transcription complex subunit 7/8 Organism osa  Oryza sativa japonica (Japanese rice) Pathway osa03018   RNA degradation Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     4345683  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4345683 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      4345683   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      4345683 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CAF1 Motif Other DBs NCBI-GeneID:  4345683 NCBI-ProteinID:  XP_015651075 UniProt:  A3BTI8 Q6Z9G7 LinkDB All DBs Position 8:21557424..21558290 Genome browser AA seq 288 aa AA seqDB search MAAAAAACVESPDEGVEIREVWAGNLEAEIAAIRDEVDRYPYVAMDTEFPGIVCRPVGNF RTTDEFNYANLEANVNMLKLIQLGLTLSDEGGDLPRRGTGGRRCIWQFNFRGFDPRTDPS NADSIQMLRTCGIDFDRFAAEGADPIRFAELLMSSGVVLNADVQWITFHSGYDFGYLLRL LTGRNLPDNMPAFFDLIRIYFPVLYDIKHLMRFCSNLHGGLSRLGELLDVKRVGTCHQAG SDSLLTLGCYNKIKEVYFKGSTEKHAGVLYGLVIEDGVNRPPPTQPNE NT seq 867 nt NT seq  +upstreamnt  +downstreamnt atggccgccgccgccgcagcctgcgtagagagccccgacgagggcgtggagatccgggag gtatgggcggggaacctggaggcggagatcgcggcgatccgcgacgaggtcgaccggtac ccgtacgtcgccatggacacggagttcccgggcatcgtgtgccgccccgtcggcaacttc cgcaccaccgacgagttcaactacgccaacctcgaggccaacgtcaacatgctcaagctc atccagctcggcctcaccctctccgacgagggcggcgacctcccgcggcgggggacgggg ggcaggcgctgcatctggcagttcaacttccgcgggttcgacccccggaccgacccgtcc aacgccgactccatccagatgctccgcacctgcggcatcgacttcgatcggttcgccgct gagggggccgacccgatccgcttcgccgagctgctcatgtcgtcgggcgtcgtgctcaac gccgacgtgcagtggatcaccttccacagcgggtacgacttcggttacctgctcaggctg ctcaccggccggaacctgccggacaacatgcccgccttctttgacctcatcagaatctac ttcccggtgctctacgacatcaagcacctcatgaggttctgcagcaacctccacggcggc ctgagcaggctcggtgagcttcttgatgtcaagcgtgtggggacctgccaccaggccggc tctgactcgctgttgaccctcgggtgctacaacaagatcaaggaggtgtacttcaaagga tcgaccgagaagcatgccggtgtgttgtatgggcttgttattgaggatggggtgaacaga ccaccaccaactcagcccaatgaatga

Oryza sativa japonica (Japanese rice): 4347066 Help Entry 4347066           CDS       T01015                                  Name (RefSeq) probable CCR4-associated factor 1 homolog 7   KO K12581   CCR4-NOT transcription complex subunit 7/8 Organism osa  Oryza sativa japonica (Japanese rice) Pathway osa03018   RNA degradation Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     4347066  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4347066 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      4347066   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      4347066 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CAF1 Motif Other DBs NCBI-GeneID:  4347066 NCBI-ProteinID:  XP_015611819 UniProt:  Q6EQ06 Q6EQZ6 LinkDB All DBs Position 9:19307415..19308257 Genome browser AA seq 280 aa AA seqDB search MATPAAEKPDGVEIREVWEDNLEAEFAVIREIVDDFPYVAMDTEFPGVVCRPLGTFKSNA DFNYATLKANVDMLKLIQLGLTFSNEHGGLPSLGPEGRPCVWQFNFRGFDPRTDVAAADS IDLLRRSGIDFTRHSADGADARRFAELLMSSGVVMNSEVRWVTFHSGYDFGYLLKLLTGT YLPDTITGFFDLIRIYFPVVYDIKHLMRFCNSLHGGLNKLAELLDVERVGICHQAGSDSL LTALSFKKLKEAYFNGLTEKYAGVLYGLGTEGGETSSAAH NT seq 843 nt NT seq  +upstreamnt  +downstreamnt atggcgacgccggccgccgagaagcccgacggggtggagatccgcgaggtgtgggaggac aacctcgaggccgagttcgcggtgattcgggagatcgttgacgacttcccgtacgtcgcg atggacacggagttcccgggcgtcgtctgcaggccgctcgggacgttcaagtccaacgcc gatttcaactacgcaacgctcaaagccaacgtcgacatgctgaagcttatccagcttggt ttaaccttctcgaatgagcatggtgggctcccgtcgcttggccccgagggtcgaccttgt gtttggcagttcaactttcgtggcttcgatccccggaccgacgtcgctgctgcagattcc attgacttgctccggcgcagcggtattgacttcacccgtcactcggctgacggcgctgat gctcgccgcttcgctgagcttctcatgtcgtcgggcgttgtgatgaactctgaggttcgc tgggttacgttccatagcggatacgactttggctacttgctcaagttgctcaccggcaca tacctgccagacacgataaccggattcttcgacctcatcaggatatatttccccgtcgtg tatgacatcaagcacttgatgcggttctgcaacagcctccatggtgggctgaacaagctt gccgagctgcttgatgttgagcgcgttggaatttgtcatcaggctggttccgactcgctg ttgaccgcgctgtcattcaaaaagctcaaggaagcatacttcaatgggttaaccgagaag tatgccggtgtgttgtatggtcttggcacagaaggtggggagacctcctctgctgctcac taa

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