KEGG   Oryza sativa japonica (Japanese rice): 107277854
Entry
107277854         CDS       T01015                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K03136  transcription initiation factor TFIIE subunit alpha
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107277854
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    107277854
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIE
     107277854
 Prokaryotic type
  Archaeal type
    TFE
     107277854
SSDB
Motif
Pfam: TFIIE_alpha Zn_ribbon_SprT Rrf2 Sgf11 HxlR Zn-ribbon_8 DUF4518 HTH_Crp_2 LisH_TPL VPS38
Other DBs
NCBI-GeneID: 107277854
NCBI-ProteinID: XP_015616545
LinkDB
Position
11:join(1780217..1780242,1780362..1780478,1781673..1781796,1783939..1784048,1784134..1784317,1784989..1785174,1785461..1785679,1785788..1786001,1786379..1786467)
AA seq 422 aa
MASMEPLNRMVRMVARAFYDDVSLARDPKSARGDNCGLAVVVLEALGRRRQWVREEDLAK
ALKISSKQLRRILQFFEEEKLVRRCHRKEVYDVVRYRIHRMRKKLKDGLDDRDTVQHYVC
PNCKRRYSAFDALQLVSDMDDYFHCEHCKGELRPESEKLTLDEIVCGGGNAIKHTHDKLK
DMQQRMEEQLKPLIAVLDRVKDLPFPSFMSLQDWERATIGASANGAVGSSQNSEGRYSSK
PMPFLGETEVEVNFLGSTGAQEGVESGMESIKPQHSWMNRKRTVLAGEHKEENNNTANLD
QSSEAKSDKKQLSEEDEMKSIQEAYAKAYYEAIQKRQEDEGKRAIQEESLACISDQPFAS
DAQFERRLGAKSKRDDGGESGDDGIELKVRQSTGNIEEVYKFADLNVETQEVSCNDYEWE
EG
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggcctccatggagcccttgaaccggatggtgaggatggtggcgcgcgcattctacgac
gacgtctcgctggccagagaccccaagtccgctcgcggcgacaactgtgggcttgccgtc
gttgtcctcgaagccctcggcaggcggcgccagtgggtccgagaggaagatttggctaaa
gcattaaagatttcctctaagcaactgcgccgcattctccagttttttgaagaagagaag
ctggtgagaagatgtcatcggaaggaggtgtatgatgttgtaagatataggatacaccgc
atgaggaaaaaattgaaagatggcttagatgacagagatacagttcagcattatgtgtgt
cctaattgtaaaagaaggtattcagcatttgatgcactgcaacttgtcagcgatatggat
gactattttcactgcgagcattgcaaaggagaacttcgtccagaaagtgaaaagcttact
ttggatgaaattgtgtgtggtggtggcaatgcaataaagcatacgcacgataaactgaag
gatatgcagcaaagaatggaggagcaattgaaaccactaatagcagtacttgacagggta
aaggatcttccttttccatcttttatgagtttgcaagattgggaaagagcaactataggg
gcatctgcaaatggtgcagttggttcatctcagaattcagaagggcgatacagcagtaaa
ccaatgcccttccttggggaaacagaggttgaagttaatttcttaggaagtactggtgca
caggaaggtgttgaatctggtatggaaagtataaagccacagcactcatggatgaatcgt
aagcgcacagtcctcgcgggggaacataaagaagaaaacaacaacactgcaaatctggat
caaagttcagaagccaagagtgacaagaaacagctctcagaggaagatgagatgaagagc
atacaggaggcatacgcaaaagcttattatgaggctatccagaaaaggcaggaagatgag
ggcaaaagggcgatacaagaagaaagcctagcatgtatttctgaccagccatttgcttct
gatgcacagtttgagaggcggttgggtgccaaatcaaaacgtgatgatggtggtgaatct
ggtgatgatggcattgaattgaaagtgaggcaatcaacaggaaatatagaagaggtatat
aagtttgctgatctgaatgtggagacccaagaagtaagttgtaatgattatgaatgggaa
gagggctga

KEGG   Oryza sativa japonica (Japanese rice): 107278090
Entry
107278090         CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K03136  transcription initiation factor TFIIE subunit alpha
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107278090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    107278090
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIE
     107278090
 Prokaryotic type
  Archaeal type
    TFE
     107278090
SSDB
Motif
Pfam: TFIIE_alpha Rrf2 Zn_ribbon_SprT Sgf11 Zn_Tnp_IS1595 Zn-ribbon_8 DpnI
Other DBs
NCBI-GeneID: 107278090
NCBI-ProteinID: XP_066162506
LinkDB
Position
12:join(1716377..1716402,1716522..1716638,1717790..1717911,1719129..1719256,1719941..1720050,1732978..1733161,1733813..1733998,1734276..1734494,1734603..1734816,1735387..1735475,1737042..1737260)
AA seq 537 aa
MASMEPLNRMVRMVARAFYDNVSLARDPKSARGDNCGLAVVVLDALTRRRQWVREEDLAK
ALKISSKQLRRILQFFEEEKLVRRCHRKESPKGVNISNNVSGTAGDVHPFTKGGEKAKMH
THSYCCLDYAQVYDVVRHRIHRMRKKLKDELDDRDTVQHYVCPNCKRRYSAFDALQLVSD
MDDYFHCEHCKEQLLPESEKLTLDEVVCGGDNAIKHKHDKLKDMQQRMEEQLKPLIAVLD
RVKDLPFPSFMSLQDWERATMEASANGAVGSSQNSEGRYSSKPMPFLGETEVEVNFLGST
GAQEGVESGMESIKPQPSWMNRKSTVLTGEHKGEISNTADLDQSSEAKSDKKQLSEKDEM
KSIQEAYAKAYYEAIQKRQEDEDKRMIQEESLTCISDQPFASDAQFERRLGAKSKRDDGG
DSGDDGIEMKVEQPTGNIGEVYKLADLDVETQESIDDDDDDDLVWRLLSLSLRKMQRSWK
LWKQGVVLSKSLSLKSLRHTAHVSSLASAALVGTRLRRRSSDTVPTRRARLHGGGGG
NT seq 1614 nt   +upstreamnt  +downstreamnt
atggcctccatggagcccttgaaccggatggtgaggatggtggcgcgcgcattctacgac
aacgtctcgctggccagagaccccaagtccgctcgcggcgacaactgtgggcttgccgtc
gttgtcctcgacgccctcaccaggcggcgccagtgggtccgagaggaagatttggctaaa
gcattaaagatttcctctaagcaactgcgccgcattctccagttttttgaagaagagaag
ctagtgagaagatgtcatcggaaggagtcaccaaaaggagtaaacatatctaacaatgtc
tctggcaccgctggtgatgtgcatccttttactaaaggaggagagaaagcaaagatgcac
acacattcctactgttgtttggactatgctcaggtatatgatgttgtaagacataggata
caccgcatgaggaaaaaattaaaagatgagttagatgacagagatacagttcagcattat
gtatgtcctaactgtaaaagaaggtattcagcatttgatgcactgcaacttgtaagcgat
atggatgactattttcactgtgagcattgcaaagaacaacttcttccagaaagtgaaaag
cttactttggatgaagttgtgtgtggtggtgacaatgcaataaagcataagcacgataaa
ctaaaggatatgcagcaaagaatggaggagcaattgaagccattaatagcagtacttgac
agggtaaaggatcttccttttccatcttttatgagtttgcaagattgggaaagagcaact
atggaggcatctgcaaatggtgcagttggttcatctcagaattcagaagggcgatacagc
agtaaaccaatgcccttccttggggaaacagaggttgaagttaatttcttaggaagtact
ggagcacaggaaggtgttgaatctggtatggaaagtataaagccacagccctcatggatg
aatcgtaagagtacagtcctcacaggggaacataaaggagaaatcagcaacactgcagat
ctggatcaaagttcagaagccaagagtgacaagaaacagctctcagagaaagatgagatg
aagagcatacaggaggcatatgcaaaagcttattatgaggctatccagaaaaggcaggaa
gatgaggacaaaaggatgatacaagaagaaagccttacatgtatttctgaccagccattt
gcttctgatgcacagtttgagaggcggttgggtgccaaatcaaaacgtgatgatggtggt
gactctggtgatgatggcattgaaatgaaagtggagcaaccaacagggaatataggagag
gtatataagttggctgatctggatgtggagacccaagaatcaattgatgatgatgatgat
gatgatcttgtttggaggctgctatccttgagcctacggaagatgcagcgctcatggaag
ctgtggaagcagggcgtcgtcctcagcaagtctctctccttgaagtccctcaggcacacg
gcgcacgtctcctccctcgcgtcggccgccctcgtagggaccaggctcaggaggagatcg
agcgacaccgtgcctactcgtcgagcgcgcttgcacggcggcggcggcggctga

KEGG   Oryza sativa japonica (Japanese rice): 4345330
Entry
4345330           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K03136  transcription initiation factor TFIIE subunit alpha
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    4345330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4345330
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIE
     4345330
 Prokaryotic type
  Archaeal type
    TFE
     4345330
SSDB
Motif
Pfam: TFIIE_alpha GH101_dom-5 A24_N_bact TF_Zn_Ribbon zf-C2H2_6 ABC2_membrane_7
Other DBs
NCBI-GeneID: 4345330
NCBI-ProteinID: XP_015650861
UniProt: A3BS58 Q6ZB67
LinkDB
Position
8:join(15571246..15571271,15571413..15571535,15572321..15572441,15572616..15572744,15573998..15574107,15574183..15574366,15575199..15575390,15576234..15576455,15576545..15576731,15578053..15578147)
AA seq 462 aa
MGSMEPFNRLVRLAARAFYDDISMKGDNQPKTSRGDNRGMAVVVLDALTRRQWVREEDLA
KALKLHSKQLRRILRFFEEEKLVTRDHRKESAKGAKIYSAAAAAAGDGQSITKEGEEKVK
MHTHSYCCLDYAQICDVVRYRIHRMKKKLKDELDSRNTIQHYICPNCKKRYSAFDALQLI
SYTDEYFHCENCNGELVAESDKLASEEMGDGDDNARKRRREKLKDMQQRIDEQLKPLQAQ
LNRVKDLPAPEFGSLQSWERANIGAFGTADPSAADSSRNPQGQYGTPMPYLGETKVEVAL
SGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNLDEKSEVKDEKKQD
SKEDEKSIQDEYIKAYYEALRKRQDEEEAKRKIQQEGDTFASASHSERQVGMKSKREDDD
EGVEWEEEQPAGNTAETYKLADLNVEAQESGDEEDEIDWEEG
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgggctccatggagccgttcaaccggctggtgaggctggcggcgcgcgccttctacgac
gacatctcgatgaagggcgacaaccagcccaagacctcccgcggggacaaccgggggatg
gctgtcgtcgtcctcgacgcgctcaccagacgccaatgggttcgagaggaggatttggct
aaggcattgaaactccactcaaagcaattgcgccgtatcctccgattctttgaagaagag
aaactagtgacacgagatcaccggaaggagtcagcaaaaggagcaaaaatatacagtgca
gcagctgcagctgctggtgatggtcaatcaattaccaaggagggagaagagaaagtaaag
atgcatacccactcgtactgttgcttggactatgcacagatctgtgatgttgtaaggtat
cggatacatcgcatgaagaaaaagttgaaagatgaattggacagcagaaatacaatccaa
cactatatatgccctaactgtaagaaaaggtattcagccttcgatgcattacagcttata
agctacaccgatgagtacttccattgcgaaaattgcaatggtgagctagttgcagagagt
gacaagcttgcttctgaggaaatgggagatggtgatgataatgcaagaaaacgccggcgt
gagaaactaaaggatatgcagcaaaggatcgatgaacaattgaagccattgcaagcacaa
cttaatagggtgaaggatcttcctgctcctgagtttgggagcttacaatcatgggaaaga
gctaacattggtgcttttggaactgctgaccctagtgctgctgactcgtctaggaaccca
caagggcagtatggtacaccaatgccatacctcggagagacaaaggttgaagttgcattg
tctggcaccggtgtaaaagatgaaggtgctgaatcaggtacaaatggtaacgggctgaaa
gtcttgcctccatggatgatcaaacaaggtatgaatcttacaaaagaacaaagaggagag
accagtaactcatcaaatctagatgaaaaatcagaagtcaaggatgagaaaaaacaggac
tcaaaagaagatgagaagagtatacaggatgaatacataaaggcttattatgaggcctta
aggaaaagacaggacgaagaagaagcgaaaaggaagatacagcaggaaggggatacattt
gcttctgcgtctcattctgaacggcaggtgggcatgaaatccaaacgagaggatgatgat
gagggtgttgaatgggaagaagagcaacctgcagggaatacagctgagacatacaaactg
gcagatttgaatgttgaagcccaagaatctggtgatgaagaagatgaaattgactgggaa
gagggttaa

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