KEGG   Oryza sativa japonica (Japanese rice): 107279054
Entry
107279054         CDS       T01015                                 
Name
(RefSeq) probable pyridoxal 5'-phosphate synthase subunit PDX1
  KO
K06215  pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa00750  Vitamin B6 metabolism
osa01100  Metabolic pathways
osa01240  Biosynthesis of cofactors
Module
osa_M00916  Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:osa00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00750 Vitamin B6 metabolism
    107279054
Enzymes [BR:osa01000]
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.3  Amine-lyases
    4.3.3.6  pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
     107279054
SSDB
Motif
Pfam: SOR_SNZ ThiG TetR_C_27 fvmX5
Other DBs
NCBI-GeneID: 107279054
NCBI-ProteinID: XP_025876686
LinkDB
Position
10:complement(join(4987703..4988199,4990615..4990685,4991114..4991171,4991276..4991342))
AA seq 230 aa
MKAFSLDITTDFDFLEILPNNRMTAILAGCYSHNQYQQLNSWPLAEDEASGVLGAEGAPA
LVEAEGTGNVVEAVRHECSIMGEIRALHNMDDDEVFAYANRIAAPYDLVMQTKQLGRLPV
VQFATGNVATPADAALMMQPGCDGVFVSSGIFKSGDPARRAHAIVQAVTHCRSSRPSTPP
PRRPRWHTFAVELCPVCRDREREEEMNGEKERKKNREREIDKWAHRQICL
NT seq 693 nt   +upstreamnt  +downstreamnt
atgaaggcattcagccttgacatcaccacagactttgactttcttgaaatccttccaaac
aacagaatgactgcgattcttgctggctgctactcccacaaccagtaccagcagttgaat
tcgtggccgttggcggaagatgaagcttctggagttcttggagcagaaggagctcctgcc
ttagtcgaagcagaaggcactggcaacgtcgtcgaggccgtccgccacgagtgctccatc
atgggtgaaatccgcgcgctccacaacatggacgacgacgaggtcttcgcctacgccaac
cgcatcgccgcgccctacgacctcgtcatgcagaccaagcagctgggccgcctccccgtc
gtgcagttcgcgaccggcaacgtcgccacccccgccgacgccgccctcatgatgcagccc
ggctgcgacggcgtcttcgtcagctcgggcatcttcaagagcggcgaccccgcacgccgc
gcccacgccatcgtgcaggccgtcacccactgcaggtcatcgcgtccaagcacgccgccg
cctcgtcgtcctcgctggcacaccttcgccgtggagctctgcccggtgtgccgcgacaga
gaaagagaggaagagatgaacggagagaaagagaggaagaagaacagagaaagagagatt
gacaagtgggcccatagacaaatttgcctttaa

KEGG   Oryza sativa japonica (Japanese rice): 4328188
Entry
4328188           CDS       T01015                                 
Name
(RefSeq) probable pyridoxal 5'-phosphate synthase subunit PDX2
  KO
K08681  pyridoxal 5'-phosphate synthase pdxT subunit [EC:4.3.3.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa00750  Vitamin B6 metabolism
osa01100  Metabolic pathways
osa01240  Biosynthesis of cofactors
Module
osa_M00916  Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:osa00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00750 Vitamin B6 metabolism
    4328188
Enzymes [BR:osa01000]
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.3  Amine-lyases
    4.3.3.6  pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
     4328188
SSDB
Motif
Pfam: SNO GATase_3 DJ-1_PfpI Peptidase_S51 GATase
Other DBs
NCBI-GeneID: 4328188
NCBI-ProteinID: XP_015623150
UniProt: A3A2S3 Q6Z6Y1
LinkDB
Position
2:complement(join(1573487..1573619,1573710..1573807,1574586..1574777,1574888..1574961,1575030..1575117,1576249..1576376,1576480..1576534))
AA seq 255 aa
MAVVGVLALQGSFNEHLAALRRIGVRGVEVRKPEQLQGLDSLIIPGGESTTMAKLANYHN
LFPALREFVGTGRPVWGTCAGLIFLANKAVGQKSGGQELIGGLDCTVHRNFFGSQLQSFE
TELSVPMLAEKEGGSDTCRGVFIRAPAILDVGSNVEVLADCPVPSDRPSITIASGEGVEE
EVYSKDRVIVAVRQGNILATAFHPELTSDSRWHRFFLDMDKESDTKAFSALSLSSSSRDT
QDGSKNKPLDLPIFE
NT seq 768 nt   +upstreamnt  +downstreamnt
atggcggtcgtcggcgtcctcgcgctgcagggctccttcaacgagcacttggccgcgctg
aggaggatcggggtgaggggggtggaggtgcggaagccggagcagctgcaggggctcgac
tcgctcatcatccccggcggcgagagcaccaccatggccaaactcgccaactaccacaac
ctgtttcctgcacttcgagaatttgttggtacaggaaggcctgtctggggaacttgtgct
ggactcatcttcctagctaacaaggcagtaggccaaaaatccggaggtcaggagcttatt
ggaggactagattgtactgtccaccggaacttttttgggagccagcttcaaagctttgaa
acggaactttcagtgccaatgcttgcagagaaggaaggagggagcgatacatgccgtggc
gtatttatacgagcacctgctatcttggatgtaggttcaaatgttgaagtactggcggat
tgtcctgttccatcggatagacccagtattacaatagcgtctggagagggtgttgaggaa
gaagtgtactcgaaagatcgggtaattgttgctgtaaggcaagggaacatcctcgctact
gcttttcacccagaattgacatcagactctagatggcatcggttcttcctggacatggat
aaagaatctgatacaaaagccttctctgctctctctctctcatcatcttcaagagacact
caagatgggtcaaagaataagcctcttgatctacccatcttcgagtag

KEGG   Oryza sativa japonica (Japanese rice): 4342162
Entry
4342162           CDS       T01015                                 
Symbol
B1026C12.3, PDX11
Name
(RefSeq) probable pyridoxal 5'-phosphate synthase subunit PDX1.1
  KO
K06215  pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa00750  Vitamin B6 metabolism
osa01100  Metabolic pathways
osa01240  Biosynthesis of cofactors
Module
osa_M00916  Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:osa00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00750 Vitamin B6 metabolism
    4342162 (B1026C12.3)
Enzymes [BR:osa01000]
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.3  Amine-lyases
    4.3.3.6  pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
     4342162 (B1026C12.3)
SSDB
Motif
Pfam: SOR_SNZ ThiG TetR_C_27 Dus NMO
Other DBs
NCBI-GeneID: 4342162
NCBI-ProteinID: NP_001408880
LinkDB
Position
7:complement(19131..20087)
AA seq 318 aa
MATDGTGVVTVYGSGTNGAALLEPSNHKSATFSVKVGLAQMLRGGVIMDVVTPEQARIAE
EAGACAVMALERVPADIRAQGGVARMSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEA
IGVDYVDESEVLTLADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTG
NVVEAVRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGV
ATPADAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAM
VGINLSDPKVERFAARSE
NT seq 957 nt   +upstreamnt  +downstreamnt
atggccaccgacggcacaggcgtcgtcaccgtctacggctccggcaccaacggtgccgcc
ttgctcgagccctccaaccacaagtccgccaccttctccgtcaaggtgggcctcgcccag
atgctgcgcggcggcgtcatcatggacgtcgtcacccccgaacaggcgcgcatcgccgag
gaggccggtgcctgcgccgtcatggccctcgagcgcgtccccgccgacatccgcgcccag
ggcggcgtcgcccgcatgtccgaccctggcctcatccgcgacatcaagcgcgccgtcacc
atccccgtcatggccaaggcccgcatcggccacttcgtcgaggcccagatcctcgaggcc
atcggcgtcgactacgtcgacgagagcgaggtcctcaccctcgccgacgacgcccaccac
atcaacaagcacaacttccgcgtccccttcgtctgcggctgccgcgacctcggcgaggcc
ctccgccgcatccgcgagggcgccgccatgatccgcaccaagggcgaggccggcaccggc
aacgtcgtcgaggccgtccgccacgtccgctccgtcatgggcgacatccgcgcgctccgc
aacatggacgacgacgaggtcttctcctacgccaagcgcatcgccgcgccctacgacctt
gtcatgcagaccaagcagctgggccgtctaccagtcgttcagtttgcggccggcggtgtg
gccacccccgccgacgctgccctcatgatgcagctcggctgcgacggcgtcttcgtcggc
tccggcatcttcaagagcggcgaccccgcgcgccgcgcccgcgccatcgtgcaggccgtc
acccactacagcgaccccaagatcttggcggaggtcagcagcgggctcggcgaggccatg
gttggcatcaacctctccgatcctaaggtggagcgcttcgccgcccgctccgagtag

KEGG   Oryza sativa japonica (Japanese rice): 4347937
Entry
4347937           CDS       T01015                                 
Symbol
OJ1136E01.11, PDX12
Name
(RefSeq) probable pyridoxal 5'-phosphate synthase subunit PDX1.2
  KO
K06215  pyridoxal 5'-phosphate synthase pdxS subunit [EC:4.3.3.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa00750  Vitamin B6 metabolism
osa01100  Metabolic pathways
osa01240  Biosynthesis of cofactors
Module
osa_M00916  Pyridoxal phosphate biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:osa00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00750 Vitamin B6 metabolism
    4347937 (OJ1136E01.11)
Enzymes [BR:osa01000]
 4. Lyases
  4.3  Carbon-nitrogen lyases
   4.3.3  Amine-lyases
    4.3.3.6  pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
     4347937 (OJ1136E01.11)
SSDB
Motif
Pfam: SOR_SNZ ThiG Dus TetR_C_27
Other DBs
NCBI-GeneID: 4347937
NCBI-ProteinID: NP_001409890
LinkDB
Position
10:complement(86106..87047)
AA seq 313 aa
MASDGTDVVALYGGANGLSHKSGSFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAV
MALERVPADIRAQGGVARMSDPGLIRDIKRSVTIPVMAKARIGHLVEAQILEAIGVDYVD
ESEVLTLADDAHHINKNNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVR
HVRSVMGDIRALRSMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAA
LMMQLGCDGVFVGSGIFKSGDPALRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSD
PKIHVERFAARSD
NT seq 942 nt   +upstreamnt  +downstreamnt
atggcctccgacggcaccgatgtcgtggcgctctacggcggcgccaatggcctctcgcac
aagtccggtagcttctccgtcaaggtgggcctcgcccagatgctgcggggcggcgtcatc
atggacgtggtcacccccgaacaggcgcgcatcgccgaggaggccggcgcctgcgctgtg
atggcgctggagcgcgtccccgccgacatccgcgcccagggcggcgtcgcccgcatgtcc
gaccctggcctcatccgcgacatcaagcgctccgtcaccatcccggtcatggccaaggcc
cgcatcgggcacttggtggaggcccagatcctggaggccatcggcgtggactacgtggac
gagagcgaggtgctcaccctcgccgacgacgcccaccacatcaacaagaacaacttccgc
gtccccttcgtgtgcggctgtcgcgacctcggcgaggcgctccgccgcatccgggagggc
gccgccatgatccgcaccaagggcgaggccggcacgggcaacgtcgtggaggccgtccgc
cacgtgcgctccgtgatgggcgacatccgcgcgctccgcagcatggacgacgacgaggtc
ttctcctacgccaagcgcatcgcggcgccctacgacctggtcatgcagaccaagcagctg
gggcgtctccccgtcgtgcagttcgcggcaggtggggtggccacccccgccgacgctgcc
ctcatgatgcagctcggctgcgacggcgtcttcgtcggctccggcatcttcaagagcggc
gaccccgcgctgcgcgcccgtgccatcgtgcaggctgtcacccactacagcgatcccaag
attctggcggaggtcagcagtgggctcggcgaggccatggttggcatcaacctctccgac
cccaagatacatgtcgagcgcttcgccgcccgctccgactag

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