KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 107279948
Entry
107279948         CDS       T01015                                 
Name
(RefSeq) WD repeat-containing protein RUP2-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa04120  Ubiquitin mediated proteolysis
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107279948
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    107279948
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    107279948
Enzymes [BR:osa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     107279948
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    107279948
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     107279948
SSDB
Motif
Pfam: WD40
Other DBs
NCBI-GeneID: 107279948
NCBI-ProteinID: XP_015624242
UniProt: Q6Z7B5
LinkDB
Position
2:complement(794686..796981)
AA seq 404 aa
MSNPSSPATSTAAGEQQLHDQDHRDEAALQQEHAAAGIIPDDEDKLSPPRCEWEFRLAAT
VPSPALAGASDSIGSLDFDPTGRHLATGGIARKIRIYRVAEPSSPAACICVPAKLSSVRW
RPGGGEAVAASHVGCGDYDGVVTEYDVERGVPVWERDEHEGRRVWALDYARGGGAATMVA
SGSDDRTAHVWDPRAPAGAAGSWATARAGGAVLCVEFDPAGGPQLAVGSADRRAAVHDVR
ALGRGAVASMDGHGRAVTYVRWAATARRVVTSAADGTHRLWALPAPAAAETAAREVRSYS
GHVSGRSFVGMGVWRGAGLIASGSESGHVFVYDLRWSKPIWVHPFSHADAFVSAVAWRQL
AGDDSDGQLVAGGSDGVLKLFTTHRRLTPDVAGVGGDDDDDVAA
NT seq 1215 nt   +upstreamnt  +downstreamnt
atgagcaacccctcctcgccggccacgtccaccgccgccggggagcagcagctgcacgat
caggatcaccgggacgaggcggcgctgcagcaagaacacgccgccgccggcattattccc
gacgacgaggacaagctgtcgccgccgaggtgcgaatgggagtttcgcctggcggccacc
gtgccgtcgccggcgctcgcgggcgcgtccgactccatcggcagcctcgacttcgacccc
accggccgccacctcgccaccggcggcatcgcccggaagatccggatttacagggtcgcc
gagccgtctagccccgccgcctgcatctgcgtcccggccaagctgagcagcgtgcggtgg
cgccctggcggcggcgaggcggtggcggcgtcgcacgtggggtgcggcgactacgacggc
gtcgtgacggagtacgacgtggagcgcggcgtgccggtctgggagcgcgacgagcacgag
gggcggcgggtgtgggcgctcgactacgcccgcggcggcggcgcggcgacgatggtggcg
tccgggtcggacgaccggacagcccacgtgtgggacccgcgcgccccggctggcgcggcg
gggtcgtgggcgacggcgcgcgccggcggcgccgtgctgtgcgtggagttcgaccccgcc
ggcgggccgcagctggcggtgggctccgccgaccgccgcgccgcggtgcacgacgtgcgc
gcgctggggcgcggcgcggtggcgtccatggacggccacggccgcgccgtgacgtacgtc
cggtgggcggcgacggcgcggcgggtggtgacgtcggcggcggacggcacccaccgtctg
tgggcgctgccggcgccggcggcggcggagacggcggcgagggaggtgcggtcgtacagc
ggccacgtcagcgggcgaagcttcgtggggatgggggtgtggcgtggcgcggggctgatc
gccagcggctccgagtccggccacgtcttcgtctacgacctccgctggtccaagcccatc
tgggtccacccattctcccacgccgacgccttcgtcagcgcggtcgcatggcgccagctc
gccggcgacgacagcgacggccagctcgtcgccggcggctccgacggcgtgctcaagctc
ttcaccacccaccgccgtctcacccccgacgtcgccggcgtcgggggcgacgacgacgac
gacgtggctgcatga

KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4330868
Entry
4330868           CDS       T01015                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa04120  Ubiquitin mediated proteolysis
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4330868
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    4330868
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    4330868
Enzymes [BR:osa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     4330868
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    4330868
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     4330868
SSDB
Motif
Pfam: WD40 zf-C3HC4_2 zf-C3HC4 WD40_like zf-C3HC4_3 zf-RING_2 zf-C3HC4_4 zf-RING_5 zf-RING_UBOX Prok-RING_4 zf-RING_10 DUF1664
Other DBs
NCBI-GeneID: 4330868
NCBI-ProteinID: XP_015627602
UniProt: Q6ZHH4 Q0DX70
LinkDB
Position
2:complement(32528081..32533578)
AA seq 685 aa
MGDSTVAGALVPSVPKQEQAPSGDASTAALAVAGEGEEDAGARASAGGNGEAAADRDLLC
PICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNYLTKAQLYPNFLLDKVLKKMS
ARQIAKTASPIDQFRYALQQGNDMAVKELDSLMTLIAEKKRHMEQQESETNMQILLVFLH
CLRKQKLEELNEIQTDLQYIKEDISAVERHRLELYRTKERYSMKLRMLLDEPAASKMWPS
PMDKPSGLFPPNSRGPLSTSNPGGLQNKKLDLKGQISHQGFQRRDVLTCSDPPSAPIQSG
NVIARKRRVQAQFNELQEYYLQRRRTGAQSRRLEERDIVTINKEGYHAGLEDFQSVLTTF
TRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFSTVVNEPSDV
HCPVVEMATRSKLSCLSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEHEKRAWSVD
FSRTEPSMLVSGSDDCKVKVWCTKQEASAINIDMKANICSVKYNPGSSHYVAVGSADHHI
HYFDLRNPSAPVHVFGGHKKAVSYVKFLSTNELASASTDSTLRLWDVKENCPVRTFRGHK
NEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPAANHRFVSSDLDDADDDPGSYFISAV
CWKSDSPTMLTANSQGTIKVLVLAP
NT seq 2058 nt   +upstreamnt  +downstreamnt
atgggtgactcgacggtggccggcgcgctggtgccatcggtgccgaagcaggagcaggcg
ccgtcgggggacgcgtccacggcggcgttggcggtggcgggggagggggaggaggatgcg
ggggcgcgcgcctccgcggggggcaacggggaggccgcggccgacagggacctcctctgc
ccgatctgcatggcggtcatcaaggacgccttcctcaccgcctgcggccacagcttctgc
tacatgtgcatcgtcacgcatctcagccacaagagcgactgcccctgctgcggcaactac
ctcaccaaggcgcagctctaccccaacttcctcctcgacaaggtcttgaagaaaatgtca
gctcgccaaattgcgaagacagcatcaccgatagaccaatttcgatatgcactgcaacag
ggaaacgatatggcggttaaagaactagatagtcttatgactttgatcgcggagaagaag
cggcatatggaacagcaagagtcagaaacaaatatgcaaatattgctggtcttcttgcat
tgcctcagaaagcaaaagttggaagagctgaatgagattcaaactgacctacagtacatc
aaagaagatataagtgctgtggagagacataggttagaattatatcgaacaaaagaaagg
tactcaatgaagctccgcatgcttttggatgaacctgctgcatcaaagatgtggccctca
cctatggataaacctagtggtctctttcctcccaactctcggggaccacttagtacatca
aatccagggggtttacagaataagaagcttgacttgaaaggtcaaattagtcatcaagga
tttcaaaggagagatgttctcacttgctcggatcctcctagtgcccctattcaatcaggc
aacgttattgctcggaagaggcgagttcaagctcagtttaacgagcttcaagaatactat
cttcaaagacggcgtaccggagcacaatcacgtaggctggaggaaagagacatagtaaca
ataaataaagaaggttatcatgcaggacttgaggatttccagtctgtgctaacaacattc
acacgatatagtcgcttgcgtgtaattgcggagctaagacatggagatctgtttcactct
gcaaatatcgtatcaagtatcgaatttgaccgtgatgatgagctatttgctactgctgga
gtctcaaagcgcatcaaagtcttcgagttttctacagttgttaatgaaccatcagatgtg
cattgtccagttgttgaaatggctactagatctaaactcagctgccttagctggaacaag
tactcaaaaaatgttatagcaagcagcgactatgagggtatagtaactgtttgggatgtc
caaacccgccagagtgtgatggagtatgaagaacatgaaaagagagcatggagtgttgat
ttttctcgaacagaaccctcgatgctagtatctgggagtgatgattgcaaggtcaaagtg
tggtgcacaaagcaagaagcaagtgccatcaatattgatatgaaggccaatatttgctct
gtcaaatataatcctgggtcgagccactatgttgcagtgggttctgctgatcaccatatt
cattattttgatttgcgaaatccaagtgcgcctgtccatgtttttggtgggcacaagaaa
gctgtttcttatgtgaagttcctgtccaccaatgagcttgcgtctgcatcaactgatagc
acattacggttatgggatgtcaaagaaaattgccctgtaaggacattcagagggcacaag
aatgaaaagaactttgttgggctgtctgtaaataacgagtacattgcctgcgggagtgaa
acgaatgaggtttttgtttaccacaaggctatctcaaaacctgctgccaaccacagattt
gtatcatctgatctcgatgatgcagatgatgatcctggctcttattttattagcgcagtc
tgctggaagagcgatagccctaccatgttaactgctaacagtcagggcaccattaaagtt
cttgtacttgctccttga

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