KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 107281411
Entry
107281411         CDS       T01015                                 
Name
(RefSeq) pre-mRNA-splicing factor 38B-like
  KO
K12850  pre-mRNA-splicing factor 38B
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107281411
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    107281411
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    107281411
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    107281411
SSDB
Motif
Pfam: PRP38 PRP38_assoc ThrE
Other DBs
NCBI-GeneID: 107281411
NCBI-ProteinID: XP_015643231
LinkDB
Position
6:complement(2285927..2289967)
AA seq 392 aa
MEIQSSGRPIDVLMEKVLSVNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSSAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYVAEPKTLWSWYEPYIK
DDEEFSPGSNGKMTTMGVYVRDLLLGQYYFDSLLPRVPLPILRQVTGHLEKMKLPTKQSG
ITGDSSRLGSDDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRKTLPSARDRERSSDG
ECARSSPRRRRSRSHERDHDSERDRSDRDRGRHKDREHDRHAREDRDRDYRRSSYSSRNV
DRQGRERRDRDSDRHGRSSARRSRSRSPNRGRTEGENHRSSPFGRPPEPSNLAKLKDLYG
DATNTKDDTGDDKARRDSGTEEVIRLGGARWR
NT seq 1179 nt   +upstreamnt  +downstreamnt
atggagatacagtcatcagggaggccaatcgatgtgctcatggagaaggttttgtcagtg
aacatcctctcctcggactacttcaaggagctctacaggctgaagacttaccacgaggtc
attgatgagatctacaatcaggttgaccacgtagagccatggatgaccggcaactgccgc
gggccctccagcgccttctgcctcctctacaagttcttcaccatgaagctcacggttaag
cagatgcacggcctgctgaagcaccctgactcgccttacatcagagctgttggatttctt
tacctgcgatatgttgcggaaccaaagacgttgtggagttggtatgaaccctacattaaa
gatgatgaggagttttctcctggatctaatggtaaaatgactactatgggtgtttatgtg
cgagatcttctacttgggcagtactactttgacagtcttcttccacgagtgcctcttccg
atcttgagacaggtcactggccatcttgagaagatgaagctcccaacaaagcagtcagga
ataacaggggactctagtcgccttggttcagatgatactgcccgacggcctccttcagta
aaggcttctctgtcggtctcctttggtcagcgtgctccacaccgtgcatccacaagggac
tcatcccctgtccggaagacattgccttcagcaagggatagagaaaggagttctgatggt
gagtgtgcaagatcttcacccaggaggcgacgaagtcggagccatgaacgtgatcatgat
tctgagcgtgatcgttcggatcgtgaccgtggtaggcacaaggatagggagcatgatcgc
catgcccgtgaggacagagaccgtgattaccgtcgttcaagctattcaagtaggaatgtt
gacagacaaggccgtgaaaggagggacagggattctgatcgacatggacgttcgagtgcc
cgcaggagcaggagcaggagtccaaaccgtggcagaaccgaaggtgaaaatcaccgctct
agcccatttggtagaccaccagagccatccaacttggcaaaattgaaggatttatatggt
gacgcgacaaacacaaaggatgatacaggtgatgataaagctcgcagggattctggaact
gaagaggtaatcagattgggaggtgcaaggtggaggtga

KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4337972
Entry
4337972           CDS       T01015                                 
Name
(RefSeq) pre-mRNA-splicing factor 38B
  KO
K12850  pre-mRNA-splicing factor 38B
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4337972
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4337972
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    4337972
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    4337972
SSDB
Motif
Pfam: PRP38 PRP38_assoc
Other DBs
NCBI-GeneID: 4337972
NCBI-ProteinID: XP_015640508
UniProt: B7F7E9 A0A8J8XW10
LinkDB
Position
5:4704603..4708595
AA seq 434 aa
MEIQTSGKPIDLLMEKVLCMNIMSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADPKILWTWYEPYLK
DDEEFSPGSNGRMTTMGVYVRDLILGQYYFDSLLPRVPLPVIRQVTSNLEKMKLPTKLSG
ITGESNRHGSEDTARRPPSVKASLSVSFGQRAPHRASTRESSPVRRTVTHDGHRKSSSPS
RRSGSREVPDRDRSSRDRSSRDYDRSSHDRDRDHSSRDYDRPSHDRDRDRDRSSRDYDRS
SRDRDHDRDIRDYHRRDRDSRDRDYRSRHSSERQDDRRDRDREGSRHRRSSSRHRSRSRS
RSRSRSRSRSRSRNEERSSPFGNAGKEKTAAISSNLAKLKDLYGDVTEKKDDGEAPRRDS
CAEEVIRLGGPRWR
NT seq 1305 nt   +upstreamnt  +downstreamnt
atggagatacaaacttcagggaagcccattgatctgctgatggagaaggttctttgtatg
aacattatgtcttctgattacttcaaggagctctacaggctgaagacctatcatgaggtc
attgatgaaatatacaatcaagttgatcatgtggagccttggatgactggcaattgcagg
ggcccctccactgcattctgtctcctctacaagttcttcaccatgaagcttactgtcaaa
cagatgcatggtttgttgaagcatcctgattccccatacattagagctatagggttcttg
tatcttcgatatgttgcagatccgaagatcttgtggacgtggtatgagccctacttgaag
gatgatgaggaattctcccctggatctaatggtcgcatgacaaccatgggtgtttatgtg
cgtgatcttatacttggacagtactacttcgatagtcttcttccaagagttcctcttcca
gtaattcgtcaagtgacatccaatcttgagaagatgaagttgcccactaagctttctggg
attactggagagtctaatcgtcatggatcagaagatactgcccgccggcctccttccgtg
aaggcttctctgtcagtttcctttggacagcgtgctccgcatcgtgcatccacacgggag
tcatctccagttcggaggacagtcacccatgatggccatcgtaaatcttcctcaccatct
cgccgtagcggaagccgcgaggttcctgatcgtgatcgatcaagccgtgaccgttctagt
cgtgactatgaccgttcaagccatgaccgtgatcgtgaccattccagtcgtgactatgac
cgtccaagccatgaccgtgaccgtgatcgtgaccgttccagtcgtgactatgaccgttca
agtcgtgaccgggatcatgatagagacatcagagactatcatcggcgtgatcgtgacagc
agggaccgtgactataggtctaggcattcatccgaaagacaagatgaccgaagggaccgt
gaccgtgagggtagcaggcacagacggtccagctctcggcacagaagcagaagccgcagc
cgcagccgcagccgcagcagaagcaggagccgcagcagaaatgaggagagatccagtcct
tttggcaatgcaggcaaagaaaagactgctgccatctcgagcaacctagcaaagctcaag
gacttgtatggtgatgtaactgagaagaaggacgacggtgaagcccctcgccgtgattcg
tgcgcggaggaggttatcaggttgggtggcccgagatggagatag

KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4346374
Entry
4346374           CDS       T01015                                 
Name
(RefSeq) pre-mRNA-splicing factor 38
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4346374
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4346374
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    4346374
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    4346374
SSDB
Motif
Pfam: PRP38 PRP38_assoc HIND
Other DBs
NCBI-GeneID: 4346374
NCBI-ProteinID: XP_015612578
UniProt: A0A0P0XID9 Q69K06
LinkDB
Position
9:complement(444799..451702)
AA seq 392 aa
MANRTDPLAKSIHGTNPQNLVEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGT
YGGNRKPTPFLCLALKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTATVADVYQYL
EPLYNDYRKIRHKLSDGKFTLTHVDEFIDDLLTKDYSCDTALPRIQKRWVLETSGTLEPR
RSALEDDFEEEEEDKEDEQPMDIDEPNGREKHDHYRGRSPTRDRDRERKHERHHRDRDYD
RDRDYGRGRERDRDRDRERDRDRDRDRDRDRDRDRHRIRDEDYSRDRDRARDRDGRERER
WDRDRGRRRSRSRSRSRDRRERDREDGEYRRRRDRGSASPRGHAEDGGSRDEPKKRKEKK
EKKGEGNAPDPNDPEIIEMNKLRASLGLKPLK
NT seq 1179 nt   +upstreamnt  +downstreamnt
atggcgaaccgcacggaccccctggcgaagagcatccacgggacgaaccctcagaacctg
gtggagaagatcgtccggtccaagatctaccagagcacctactggaaggagcagtgcttt
ggcctcaccgccgagaccctcgtcgacaaggccatggagctcgaccacaccggcggcacc
tacggcggcaaccgcaagcccacccccttcctctgcctcgccctcaagatgctccagatc
cagcccgacaaggacatcgtcgtcgagttcatcaagaacgaggattacaagtatgtccgt
gttcttggtgccttctaccttcgcctcactgccaccgtcgccgacgtctaccaatacctc
gagccgctctacaacgactaccgcaagatcaggcacaagctcagtgatggaaagtttacc
ctgacccacgtcgacgagttcattgacgacctcctcaccaaggactactcctgcgatacg
gccctcccccgcatccagaaaagatgggttcttgaaacttctggaactctagaaccaaga
agaagtgcacttgaagatgattttgaggaagaggaggaagacaaggaggatgaacaacct
atggatatagatgagccaaatggtcgtgaaaagcatgatcattatcgtggaaggagccct
actagagatcgagacagggagaggaaacatgaaagacaccacagggaccgagattacgac
agagatcgggattatggtaggggacgggaaagagaccgagatagagaccgtgaaagagat
agagacagggatagagatcgggatcgggatcgggatcgagaccgtcatcgcatacgagat
gaggactacagtcgagatagggaccgagcaagagatagggatggcagggaaagagaacgc
tgggacagagaccgtgggaggcgcaggagccgttcaaggagcaggagcagggatcgacga
gaaagagaccgagaagatggagagtaccgtaggaggcgtgatcggggtagtgccagtcct
cgaggtcatgcggaggatggtggctcaagagatgagccgaagaagagaaaggaaaagaaa
gagaagaagggtgaaggaaatgcaccagatccaaatgacccagagattatagaaatgaac
aagctccgagcctctctagggttgaaaccactgaagtag

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