Oryza sativa japonica (Japanese rice) (RefSeq): 107281411
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Entry
107281411 CDS
T01015
Name
(RefSeq) pre-mRNA-splicing factor 38B-like
KO
K12850
pre-mRNA-splicing factor 38B
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107281411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
107281411
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107281411
Complex C
U4/U6.U5 tri-SnRNP related factors
107281411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
ThrE
Motif
Other DBs
NCBI-GeneID:
107281411
NCBI-ProteinID:
XP_015643231
LinkDB
All DBs
Position
6:complement(2285927..2289967)
Genome browser
AA seq
392 aa
AA seq
DB search
MEIQSSGRPIDVLMEKVLSVNILSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSSAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAVGFLYLRYVAEPKTLWSWYEPYIK
DDEEFSPGSNGKMTTMGVYVRDLLLGQYYFDSLLPRVPLPILRQVTGHLEKMKLPTKQSG
ITGDSSRLGSDDTARRPPSVKASLSVSFGQRAPHRASTRDSSPVRKTLPSARDRERSSDG
ECARSSPRRRRSRSHERDHDSERDRSDRDRGRHKDREHDRHAREDRDRDYRRSSYSSRNV
DRQGRERRDRDSDRHGRSSARRSRSRSPNRGRTEGENHRSSPFGRPPEPSNLAKLKDLYG
DATNTKDDTGDDKARRDSGTEEVIRLGGARWR
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggagatacagtcatcagggaggccaatcgatgtgctcatggagaaggttttgtcagtg
aacatcctctcctcggactacttcaaggagctctacaggctgaagacttaccacgaggtc
attgatgagatctacaatcaggttgaccacgtagagccatggatgaccggcaactgccgc
gggccctccagcgccttctgcctcctctacaagttcttcaccatgaagctcacggttaag
cagatgcacggcctgctgaagcaccctgactcgccttacatcagagctgttggatttctt
tacctgcgatatgttgcggaaccaaagacgttgtggagttggtatgaaccctacattaaa
gatgatgaggagttttctcctggatctaatggtaaaatgactactatgggtgtttatgtg
cgagatcttctacttgggcagtactactttgacagtcttcttccacgagtgcctcttccg
atcttgagacaggtcactggccatcttgagaagatgaagctcccaacaaagcagtcagga
ataacaggggactctagtcgccttggttcagatgatactgcccgacggcctccttcagta
aaggcttctctgtcggtctcctttggtcagcgtgctccacaccgtgcatccacaagggac
tcatcccctgtccggaagacattgccttcagcaagggatagagaaaggagttctgatggt
gagtgtgcaagatcttcacccaggaggcgacgaagtcggagccatgaacgtgatcatgat
tctgagcgtgatcgttcggatcgtgaccgtggtaggcacaaggatagggagcatgatcgc
catgcccgtgaggacagagaccgtgattaccgtcgttcaagctattcaagtaggaatgtt
gacagacaaggccgtgaaaggagggacagggattctgatcgacatggacgttcgagtgcc
cgcaggagcaggagcaggagtccaaaccgtggcagaaccgaaggtgaaaatcaccgctct
agcccatttggtagaccaccagagccatccaacttggcaaaattgaaggatttatatggt
gacgcgacaaacacaaaggatgatacaggtgatgataaagctcgcagggattctggaact
gaagaggtaatcagattgggaggtgcaaggtggaggtga
Oryza sativa japonica (Japanese rice) (RefSeq): 4337972
Help
Entry
4337972 CDS
T01015
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4337972
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4337972
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
4337972
Complex C
U4/U6.U5 tri-SnRNP related factors
4337972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
4337972
NCBI-ProteinID:
XP_015640508
UniProt:
B7F7E9
A0A8J8XW10
LinkDB
All DBs
Position
5:4704603..4708595
Genome browser
AA seq
434 aa
AA seq
DB search
MEIQTSGKPIDLLMEKVLCMNIMSSDYFKELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR
GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADPKILWTWYEPYLK
DDEEFSPGSNGRMTTMGVYVRDLILGQYYFDSLLPRVPLPVIRQVTSNLEKMKLPTKLSG
ITGESNRHGSEDTARRPPSVKASLSVSFGQRAPHRASTRESSPVRRTVTHDGHRKSSSPS
RRSGSREVPDRDRSSRDRSSRDYDRSSHDRDRDHSSRDYDRPSHDRDRDRDRSSRDYDRS
SRDRDHDRDIRDYHRRDRDSRDRDYRSRHSSERQDDRRDRDREGSRHRRSSSRHRSRSRS
RSRSRSRSRSRSRNEERSSPFGNAGKEKTAAISSNLAKLKDLYGDVTEKKDDGEAPRRDS
CAEEVIRLGGPRWR
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggagatacaaacttcagggaagcccattgatctgctgatggagaaggttctttgtatg
aacattatgtcttctgattacttcaaggagctctacaggctgaagacctatcatgaggtc
attgatgaaatatacaatcaagttgatcatgtggagccttggatgactggcaattgcagg
ggcccctccactgcattctgtctcctctacaagttcttcaccatgaagcttactgtcaaa
cagatgcatggtttgttgaagcatcctgattccccatacattagagctatagggttcttg
tatcttcgatatgttgcagatccgaagatcttgtggacgtggtatgagccctacttgaag
gatgatgaggaattctcccctggatctaatggtcgcatgacaaccatgggtgtttatgtg
cgtgatcttatacttggacagtactacttcgatagtcttcttccaagagttcctcttcca
gtaattcgtcaagtgacatccaatcttgagaagatgaagttgcccactaagctttctggg
attactggagagtctaatcgtcatggatcagaagatactgcccgccggcctccttccgtg
aaggcttctctgtcagtttcctttggacagcgtgctccgcatcgtgcatccacacgggag
tcatctccagttcggaggacagtcacccatgatggccatcgtaaatcttcctcaccatct
cgccgtagcggaagccgcgaggttcctgatcgtgatcgatcaagccgtgaccgttctagt
cgtgactatgaccgttcaagccatgaccgtgatcgtgaccattccagtcgtgactatgac
cgtccaagccatgaccgtgaccgtgatcgtgaccgttccagtcgtgactatgaccgttca
agtcgtgaccgggatcatgatagagacatcagagactatcatcggcgtgatcgtgacagc
agggaccgtgactataggtctaggcattcatccgaaagacaagatgaccgaagggaccgt
gaccgtgagggtagcaggcacagacggtccagctctcggcacagaagcagaagccgcagc
cgcagccgcagccgcagcagaagcaggagccgcagcagaaatgaggagagatccagtcct
tttggcaatgcaggcaaagaaaagactgctgccatctcgagcaacctagcaaagctcaag
gacttgtatggtgatgtaactgagaagaaggacgacggtgaagcccctcgccgtgattcg
tgcgcggaggaggttatcaggttgggtggcccgagatggagatag
Oryza sativa japonica (Japanese rice) (RefSeq): 4346374
Help
Entry
4346374 CDS
T01015
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4346374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4346374
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
4346374
Complex C
U4/U6.U5 tri-SnRNP related factors
4346374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
4346374
NCBI-ProteinID:
XP_015612578
UniProt:
A0A0P0XID9
Q69K06
LinkDB
All DBs
Position
9:complement(444799..451702)
Genome browser
AA seq
392 aa
AA seq
DB search
MANRTDPLAKSIHGTNPQNLVEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGT
YGGNRKPTPFLCLALKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTATVADVYQYL
EPLYNDYRKIRHKLSDGKFTLTHVDEFIDDLLTKDYSCDTALPRIQKRWVLETSGTLEPR
RSALEDDFEEEEEDKEDEQPMDIDEPNGREKHDHYRGRSPTRDRDRERKHERHHRDRDYD
RDRDYGRGRERDRDRDRERDRDRDRDRDRDRDRDRHRIRDEDYSRDRDRARDRDGRERER
WDRDRGRRRSRSRSRSRDRRERDREDGEYRRRRDRGSASPRGHAEDGGSRDEPKKRKEKK
EKKGEGNAPDPNDPEIIEMNKLRASLGLKPLK
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgcacggaccccctggcgaagagcatccacgggacgaaccctcagaacctg
gtggagaagatcgtccggtccaagatctaccagagcacctactggaaggagcagtgcttt
ggcctcaccgccgagaccctcgtcgacaaggccatggagctcgaccacaccggcggcacc
tacggcggcaaccgcaagcccacccccttcctctgcctcgccctcaagatgctccagatc
cagcccgacaaggacatcgtcgtcgagttcatcaagaacgaggattacaagtatgtccgt
gttcttggtgccttctaccttcgcctcactgccaccgtcgccgacgtctaccaatacctc
gagccgctctacaacgactaccgcaagatcaggcacaagctcagtgatggaaagtttacc
ctgacccacgtcgacgagttcattgacgacctcctcaccaaggactactcctgcgatacg
gccctcccccgcatccagaaaagatgggttcttgaaacttctggaactctagaaccaaga
agaagtgcacttgaagatgattttgaggaagaggaggaagacaaggaggatgaacaacct
atggatatagatgagccaaatggtcgtgaaaagcatgatcattatcgtggaaggagccct
actagagatcgagacagggagaggaaacatgaaagacaccacagggaccgagattacgac
agagatcgggattatggtaggggacgggaaagagaccgagatagagaccgtgaaagagat
agagacagggatagagatcgggatcgggatcgggatcgagaccgtcatcgcatacgagat
gaggactacagtcgagatagggaccgagcaagagatagggatggcagggaaagagaacgc
tgggacagagaccgtgggaggcgcaggagccgttcaaggagcaggagcagggatcgacga
gaaagagaccgagaagatggagagtaccgtaggaggcgtgatcggggtagtgccagtcct
cgaggtcatgcggaggatggtggctcaagagatgagccgaagaagagaaaggaaaagaaa
gagaagaagggtgaaggaaatgcaccagatccaaatgacccagagattatagaaatgaac
aagctccgagcctctctagggttgaaaccactgaagtag
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