KEGG   Oryza sativa japonica (Japanese rice): 112936013
Entry
112936013         CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112936013
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112936013
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    112936013
   03041 Spliceosome [BR:osa03041]
    112936013
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     112936013
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     112936013
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    112936013
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 112936013
NCBI-ProteinID: XP_015636054
UniProt: A0A8J8YDN3 Q0JDN9
LinkDB
Position
4:complement(join(19489780..19489826,19489960..19490073,19494603..19494735))
AA seq 97 aa
MSTGGGADKSGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDDA
NT seq 294 nt   +upstreamnt  +downstreamnt
atgagcaccggcggcggcgcggacaagtccggcggcggcggcggaggggcggtgaagacg
ccctcggacttcctcaagtcgatcaggggacgccccgtcgtcgtcaagctcaactccggc
gtcgactaccgaggtattttggcttgcctggatgggtatatgaacattgcaatggagcaa
acggaagagtatgtgaatggccaactcaagaacaagtatggtgatgccttcataagaggc
aacaatgttctatacatcagcacttcgaagaggacccttacggatgacgcatag

KEGG   Oryza sativa japonica (Japanese rice): 4325074
Entry
4325074           CDS       T01015                                 
Name
(RefSeq) sm-like protein LSM3A
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4325074
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4325074
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4325074
   03041 Spliceosome [BR:osa03041]
    4325074
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4325074
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4325074
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4325074
 Complex C
  U2 snRNP components
    4325074
SSDB
Motif
Pfam: LSM TIG_SUH Glutaredoxin
Other DBs
NCBI-GeneID: 4325074
NCBI-ProteinID: XP_015641494
UniProt: Q5N9F1 A0A0P0VAW1
LinkDB
Position
1:complement(join(38155345..38155425,38155826..38155921,38156620..38156757))
AA seq 104 aa
MAAAAAAAAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVE
EIVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA
NT seq 315 nt   +upstreamnt  +downstreamnt
atggcggcggcggcggcggcagcggcggctgaggaggagatcgcggtgaaggagccgctg
gatctgatcaggctcagcctcgacgagcgcatctacgtcaagctcaggtccgaccgcgag
ctccgcggcaagctccatgcatacgatcaacatttaaacatgattcttggagatgttgag
gagatcgtgacaacagttgagattgacgatgagacatatgaagaaattgtgcgcaccaca
aaacgcactatccccttcctttttgttcgaggtgatggtgtcattttggtttctccaccc
ctccgaacggcatga

KEGG   Oryza sativa japonica (Japanese rice): 4326227
Entry
4326227           CDS       T01015                                 
Symbol
OsJ_01157, P0462H08.1
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4326227 (OsJ_01157)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4326227 (OsJ_01157)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4326227 (OsJ_01157)
   03041 Spliceosome [BR:osa03041]
    4326227 (OsJ_01157)
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4326227 (OsJ_01157)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4326227 (OsJ_01157)
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4326227 (OsJ_01157)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 4326227
NCBI-ProteinID: NP_001388564
LinkDB
Position
1:complement(join(8583000..8583022,8583119..8583274,8583898..8583940,8585485..8585562,8585833..8585931,8586029..8586070,8586163..8586165))
AA seq 147 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGRGIGRGQDDG
GSKGGGGRGRGGIGGKGGIKGGGRGRG
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttccgctctcgctcctcaagaccgcccaggggcatcccatgctcgtggagcttaag
aacggcgagacgtacaacgggcacttggtgaactgcgacacgtggatgaacatccacctc
cgggaggttatttgcacctcaaaggatggtgataagttttggaggatgccagaatgttac
atccgtgggaacaccatcaagtatcttcgggttcctgatgaggtgattgacaaggtccag
gaagagacttcaaagagcagatcagataggaggccaccaggtgtaggccgcggaagagga
agaggtgatataggtactaagcctggaggcagaggcattgggcgtggccaggatgatggt
ggcagcaaaggcggtggtggccgtggaaggggaggaattggaggtaaaggtggcatcaaa
ggtgggggccgcggacgtgggtga

KEGG   Oryza sativa japonica (Japanese rice): 4329449
Entry
4329449           CDS       T01015                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4329449
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4329449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4329449
   03041 Spliceosome [BR:osa03041]
    4329449
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4329449
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4329449
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4329449
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 4329449
NCBI-ProteinID: NP_001403553
LinkDB
Position
2:complement(join(18693202..18693248,18693329..18693442,18697028..18697172))
AA seq 101 aa
MSSGGEKSGSGGGGGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI
AMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDGA
NT seq 306 nt   +upstreamnt  +downstreamnt
atgagcagtggcggcgagaagtccggctcgggcggcggcggcggtggcggcggcggcggg
gcggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaag
ctcaactccggcgtcgactaccgcggtattttggcttgtcttgatggttacatgaacatt
gcaatggagcaaacggaagaatatgtcaatggtcagctgaagaacaagtacggtgacgct
ttcatacgaggaaacaatgttttatacatcagcacatcaaagcgtaccctcactgatggt
gcatga

KEGG   Oryza sativa japonica (Japanese rice): 4338670
Entry
4338670           CDS       T01015                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4338670
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4338670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4338670
   03041 Spliceosome [BR:osa03041]
    4338670
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4338670
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4338670
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4338670
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 4338670
NCBI-ProteinID: XP_015637744
UniProt: Q60E54 B9F364
LinkDB
Position
5:complement(join(18940112..18940147,18940249..18940321,18941789..18941912,18942044..18942080))
AA seq 89 aa
MSQNNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEG
RRITKLDQILLNGNNIAILVPGGSPPDVA
NT seq 270 nt   +upstreamnt  +downstreamnt
atgtctcagaacaacccctcccagctcctcccctcagagctgattgaccgctgcatcggg
tccaagatttgggtgattatgaagggtgacaaggagctcgtcggcactctctgtgggttc
gatgtgtacgtcaacatggtgctcgaggacgttactgagtatgaatacactgctgaaggc
cgtcgcataacaaagcttgatcagatactcctaaacggcaacaatatagctattttggtt
cctggtggttctcccccagatgtggcataa

KEGG   Oryza sativa japonica (Japanese rice): 4339810
Entry
4339810           CDS       T01015                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4339810
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4339810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4339810
   03041 Spliceosome [BR:osa03041]
    4339810
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4339810
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4339810
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4339810
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 4339810
NCBI-ProteinID: XP_015640148
UniProt: A0A0P0WRT3 Q5TKF9
LinkDB
Position
5:join(29809771..29809810,29809916..29809956,29810050..29810124,29811099..29811151,29811289..29811379)
AA seq 99 aa
MASAGPGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTREGVQQLVL
GLYIIRGDNISVVGEVDEELDARLDLSNLRAHPLKPVIH
NT seq 300 nt   +upstreamnt  +downstreamnt
atggcgtccgccggcccggggctcgaatcgctcgtcgaccagatcatatccgtcatcaca
aacgatggccgcaacattgtggggacactcagaggattcgatcaagccaccaacatcatc
ctcgatgagtcccatgagagggtctattctaccagggagggagtgcaacagcttgttctt
gggttgtacatcataaggggcgacaacatcagcgtggtgggggaggtggatgaagaactg
gatgcgaggctggatctatcgaatctgagagcgcacccgctgaagcccgtgatccactaa

KEGG   Oryza sativa japonica (Japanese rice): 4344686
Entry
4344686           CDS       T01015                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4344686
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4344686
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4344686
   03041 Spliceosome [BR:osa03041]
    4344686
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4344686
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4344686
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4344686
 Complex C
  U2 snRNP components
    4344686
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF1256 DUF150_C
Other DBs
NCBI-GeneID: 4344686
NCBI-ProteinID: XP_015650113
UniProt: Q0J7Y5 A0A0P0XBT0
LinkDB
Position
8:join(3160643..3160645,3160775..3160933,3163308..3163427)
AA seq 93 aa
MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPQDGVDIDILHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgctgttcttctcctacttcaaggagctcgtggggaaggaggtgacggtggagctcaag
aacgacctggccatccgcggcacgctccactccgtcgaccaatacctcaacatcaagctc
gagaacactcgggttgtcgaccaggacaagtacccgcacatgctatccgtgcgaaactgc
ttcatcaggggatcggtggtgcggtacgtgctgcttccccaggatggcgtcgacattgac
atcctccatgatgccaccaggagggaggctcgcggaggctga

KEGG   Oryza sativa japonica (Japanese rice): 4344803
Entry
4344803           CDS       T01015                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4344803
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4344803
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4344803
   03041 Spliceosome [BR:osa03041]
    4344803
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4344803
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4344803
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4344803
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 4344803
NCBI-ProteinID: XP_015649738
UniProt: Q6ZBS1
LinkDB
Position
8:join(4612350..4612352,4612475..4612556,4613865..4613936,4614300..4614352,4614762..4614848)
AA seq 98 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKL
SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFQSDGA
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtcggggcgcaaggagacggtgctggacctggccaagttcgtcgacaagggcgtccag
gtcaagctcaccggcggcaggcaagttacagggactttgaagggctatgaccagcttcta
aacttggtgcttgatgaagcggttgaatttgaaagagagcaagatgatccattgaaacta
tcagggaaaaccagacagcttggtcttattgtctgtaggggtacagcggtgatgcttgta
tcgccaaccgatggaacggacgagattgccaaccccttccaatctgatggtgcataa

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