KEGG   Oryza sativa japonica (Japanese rice): 112936215
Entry
112936215         CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K03505  DNA polymerase delta subunit 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112936215
   03410 Base excision repair
    112936215
   03420 Nucleotide excision repair
    112936215
   03430 Mismatch repair
    112936215
   03440 Homologous recombination
    112936215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    112936215
   03400 DNA repair and recombination proteins [BR:osa03400]
    112936215
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    112936215
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      112936215
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     112936215
SSDB
Motif
Pfam: DNA_pol_delta_4 SH3BGR
Other DBs
NCBI-GeneID: 112936215
NCBI-ProteinID: XP_025875805
LinkDB
Position
8:complement(join(27376082..27376374,27376467..27376578))
AA seq 134 aa
MAGGGVKGFYRQKKKGGVAKKPISRKKLPPQNCSESQDCGDHDLGDEVEEQLQQFDMDMT
YGPCIGMTRLRRWERAAAMGLRPPPRLRDLLLPPPAPHPLPSSSSSPAKILTGSSGGGGS
TSVQGECLWEGKVS
NT seq 405 nt   +upstreamnt  +downstreamnt
atggccggcggcggcgtgaagggcttctaccggcagaagaagaaaggcggcgtcgccaag
aaaccaatatccagaaagaaattaccgccacagaactgctccgaatcccaagattgcggt
gatcatgatcttggcgacgaggtggaggagcagctgcagcagttcgacatggacatgacg
tacggcccgtgcatcggcatgacgcgcctccgacggtgggagcgcgccgccgccatgggc
ctgcgaccgccgccccgtctccgggacctactcctgccacctccggcgcctcatcctctg
ccatcgtcttcttcgtctccggccaagattctcaccggcagcagcggcggcggcggtagc
acctccgtgcagggcgagtgcctctgggaaggcaaagtgagctag

KEGG   Oryza sativa japonica (Japanese rice): 4327080
Entry
4327080           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K03504  DNA polymerase delta subunit 3
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4327080
   03410 Base excision repair
    4327080
   03420 Nucleotide excision repair
    4327080
   03430 Mismatch repair
    4327080
   03440 Homologous recombination
    4327080
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:osa01009]
    4327080
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4327080
   03400 DNA repair and recombination proteins [BR:osa03400]
    4327080
Protein phosphatases and associated proteins [BR:osa01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     4327080
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    4327080
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      4327080
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     4327080
SSDB
Motif
Pfam: CDC27
Other DBs
NCBI-GeneID: 4327080
NCBI-ProteinID: XP_015624950
UniProt: A0A8J8XUI1 Q5QNL2
LinkDB
Position
1:complement(join(5728990..5729128,5729872..5729953,5730559..5731041,5731181..5731593,5731829..5731988,5732110..5732234,5732325..5732380,5733521..5733601))
AA seq 512 aa
MAAAAADPALLDLIPQIHALFADPLRVISYKWLSRNFSVSSNDSKRLLQEFVNKHGADLK
VIYSVSGWLKKNPTNYCVKLTSGHKLEEARQEFKDSCSVQVYSIQACIPKDTAVLWNPEF
VQAEELFNRPFDEENCLRDNRFCGVLNSFVKRTANGKLVSSFPPKPINSVAAAAPLKTSS
APKEQSAKGQQQGLPGSSSPKKGTSNKAEKDISSVLDKATNAPVVKEPSIALQGNKNKAQ
NGKALPSNGGSLATMWGRASAKPKTPATTNPTVLPSVAVTADAQICAKEEANADSSDDEQ
AVHYKRGSSANNRKRRAVFDLSDDDEDDNVVAIASPEPPEQCITNPIDEVAQESNPKQEN
LENKQEVEKDVKCCIGRTESPECKTKSSNTVSHSGITLKEKNNGPPPNDNKQDHAAETAS
NSPKRRKVLKTRIDERGREVTEVVWEGEASAGDKAEKNVSDTGAANRATLSSKPQPVAKT
EKSNASSKTAGNKKPAKAGTKQGNIMSFFKKV
NT seq 1539 nt   +upstreamnt  +downstreamnt
atggcggccgccgccgcggacccggccctgctcgacctgattccccagatccacgccctc
ttcgccgatccgctccgtgtgatttcatacaaatggctcagcaggaacttctcagtatca
tccaatgattcaaagaggttgcttcaggagttcgtcaacaaacatggggctgatcttaaa
gtgatttacagtgtgtctggatggttaaagaagaaccccacaaattattgtgtaaaactc
acttcaggccataaacttgaagaagcaaggcaagaatttaaagattcttgttcagttcaa
gtgtacagtatccaggcttgtattccaaaagatactgctgtactttggaatcctgaattt
gtacaggcagaggagctttttaaccggccatttgatgaagaaaattgtttgagagataat
aggttttgtggtgttttgaattcttttgtcaagcgaactgctaatgggaagcttgtgagt
tcatttccgccaaagcctataaatagtgttgctgcagctgcaccgttgaaaactagtagt
gctccaaaagaacaatctgctaagggtcaacagcaaggtctacctggatcatccagtcca
aagaaaggaacaagtaataaggctgagaaggatatttcctcggtcttggataaagccacc
aatgctcctgttgtcaaagaaccatcaattgctctgcagggaaacaaaaacaaggctcag
aatgggaaggcgctgcccagtaatggtggatcacttgctacgatgtggggacgtgcatca
gctaaacccaagactccagctaccactaatcctacagttttaccaagtgttgctgttaca
gctgatgcacaaatatgtgcaaaggaagaagcaaatgctgatagtagtgatgatgaacaa
gctgtacactacaagcgtggctctagtgcaaataacagaaagagaagagcagtctttgat
ctttcagatgatgatgaagatgacaatgttgtagccattgcatctcctgagccaccggaa
cagtgcattacaaatcctattgatgaggttgctcaagaaagtaaccccaaacaagaaaac
ttggaaaataaacaagaggttgagaaggatgtgaaatgttgcataggaaggacagagtct
cctgagtgtaaaaccaaaagtagcaacactgtcagccattctgggatcaccttaaaagaa
aagaacaatggtccaccacctaatgacaataagcaggatcatgctgctgagactgcttcc
aactcacctaaaagaaggaaagttttgaagacacgaatagatgagcggggaagagaagta
accgaggttgtctgggagggtgaagcttctgcaggtgataaggctgagaagaatgtgagc
gatactggtgctgcaaacagggcaactctctcaagcaagccgcagccagtagcaaagacc
gaaaaaagcaatgcttcgagtaaaacagccggcaacaagaaacctgccaaggctggaacc
aagcaaggcaacattatgtcattcttcaagaaggtataa

KEGG   Oryza sativa japonica (Japanese rice): 4329458
Entry
4329458           CDS       T01015                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4329458
   03410 Base excision repair
    4329458
   03420 Nucleotide excision repair
    4329458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4329458
   03400 DNA repair and recombination proteins [BR:osa03400]
    4329458
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     4329458
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    4329458
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      4329458
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 4329458
NCBI-ProteinID: XP_015623163
LinkDB
Position
2:join(18810424..18810642,18811320..18811385,18811455..18811514,18811617..18811712,18814040..18814200,18814455..18814543,18814625..18814842,18815406..18815492,18815588..18815722,18816102..18816224,18816524..18816607,18816776..18816940,18817063..18817239,18817413..18817526,18817665..18817769,18818809..18818927,18818997..18819138,18819214..18819308,18819510..18819615,18819878..18819957,18820038..18820214,18821581..18821665,18821777..18821857,18821961..18822104,18822221..18822316,18822407..18822607,18822836..18822890,18822976..18823118,18823215..18823648,18824170..18824311,18824428..18824625,18824709..18824783,18824863..18825053,18825449..18825620,18825709..18825773,18826399..18826531,18826614..18826715,18826800..18826883,18827409..18827483,18827571..18827630,18827720..18827976,18828313..18828361,18828534..18828694,18828766..18828832,18828927..18829052,18829175..18829345,18830319..18830522,18830812..18830918,18831361..18831721)
AA seq 2218 aa
MGGGGGGDGRRRRPSAGGGGGGGGRGGGWRSGSSAAKDQRLRLGAEELLESRLGFAPYTD
SERRLGWLLTFSPSSWEDEDTGKIYSCVDLYFVSQDGSTFKVKYKFPPYFYAATKDKMEL
EVEAYLRRRYEGDIADIEIIEKEDLDLKNHLSGLKRKYLKIQFDTVQQLMRVRSDLLHVV
EKNEEELNAAEAFESIYGVKRVERPQDYINCIIDLREYDVPYHVRFAIDNDVRCGQWYDV
SVSSSDVLLHRREDLLQRAEVHVCAFDIETTKLPLKFPDAEYDTVMMISYMIDGQGYLII
NRECVGEDIEDLEYTPKPEFEGHFKVKNVANELDLLKAWFSHMQEVKPGIYVTYNGDFFD
WPFLEKRAAHHGIKMNEEIGFQCDNNQGECRAKFSCHLDCFAWVKRDSYLPQGSHGLKAV
TKAKLGYDPLEVNPEDMVRFAMEQPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPM
SPDEVLRKGSGTLCEMLLMVQAFKANIICPNKHQADLEKFYNNRLLESETYIGGHVECLE
TGVFRSDLPTKFQLEPSACEQLIANLDRDLQYAISVEGKLDIDSVTNYDEVKDAIKQKLV
SLRDHPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDVDCTACDFNRPGKNCLRTLE
WVWRGETYMAKKSDYHHIKRQIESEMIQAGGVTPSKPFLDLSKPEHLLKLKDRLKKYCQK
AYKRVVDKPITEVRNAGICMRENSFYVDTVRSFRDRRYEYKGLNKSWKGKLAEAKANGNS
IKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARL
LVDKIGKPLELDTDGIWCVLPGSFPENFTFKTNAGKKLTISYPCVMLNVDVARNNTNDQY
QTLNDPVNKLYTTHSECSIEFEVDGPYKAMILPASKEEGVLLKKRYAVFNEDGTLAELKG
FEIKRRGELKLIKVFQAEVFDRFLHGSTLEECYTAVASVANRWLDLLDNQGIDISDNELL
DFISESSTMSKSLVDYGEQKSCAVTTAKRLAEFLGDSMVKDKGLHCQYIVAREPQGTPVS
ERAIPVAIFETDAEIAKFYLRKWCKISSEASIRSIVDWSYYKQRLSSAIQKIITIPAAMQ
KISNPVPRVLHPDWLHKKVREKDDRFRQRKLRDMFNPLEKDRGVQNLDGTGDMEDLLTLD
GGMRKSHVPNGFGKENKPNDAPSTEAGSKHSKNKQKSITRSNEPLAVHIQNDAADEQVDR
STDYQGWLDAKKRKWKYVREQKKRQRLGAAVTSDGPTNDLFSARNVGQLHGNARNRSTFF
QKQELALFRSHWQIIQLASSTLPGHFFAWVVAEGIMFKIPINVPRVFYLNSKAPVTEEFP
GRRVKKILPHGRPCFNLIEVVTSEEQFRVEGKKLAAHLAEPDVEGIYETKILPELNAILQ
IGCVCKVDKSAKRRSIQDGWDLAELQMKTTAECSYLEQTVSFFYLYHSLSEGRGVYVMYF
PTSFRIHAVVVNPFRNKELSPSFLEKQYRDACQALGSLHENITFLVDYHTSIDAGSKHVQ
RMLLEYRQQHPGPVIGVIECPKLQALKSAVRALDDFPCVTIPCNARDNNYQALGWQATAG
RTSMQRCAASTQWFNERISLARYAHVPLGNFELDWLLFTADVFFSRALRDQQQVLWISDD
GIPDLGGTYEGDTCFADEVIQPALTYPGAYRRVAVELKIHHLAVNSLLKSSQVDEMEGGP
IGSFANDMPAGPNGTETEFDDATLCLPAFQVLKQLIQRCISDAVSSGNVFADAILQHLYR
WLCSPRSKLHDPALHHLLHNVMKKVFALMLAEFRKLGANVIFANFSKIIIDTGKVDLLSA
RAYCDSLLKTLQTRDIFEWVELEPLHYWHSLLFMDQYNYGGIQAKMQNATSEGSSDGDND
IDIVSSWNIAEYLPKATQDHFVLIVSEFLYVPWKYMKEQVALRSTTRDETSCTPSITIMA
AENLEVQVIGYLRDQISNYFADKLLRIVSDILHHFKGKGKSESVELTNREPDPHTHKGDA
ALEFIKHICAVLALDQNVQHDILRMRKNLLKLVRVKEFAPEAQFQDPCASFTLPNVICSY
CNDCRDLDLCRDSTLQGQEWRCAVPQCGQPYHREQMENALLQVVRQRERLYHLQDLVCLR
CRQVKAAHLSEQCSCGGAFRCKEESSQFLSKMRVFLNVAVSQKFELLQDVVQWILEVR
NT seq 6657 nt   +upstreamnt  +downstreamnt
atgggcggcggcggtggcggcgatggtcggcggcggaggccgtcggccggaggaggagga
gggggagggggaaggggaggcggttggaggtctgggtcgtcggcggcgaaggaccagcgg
ctgcggctcggagcggaggagctcctggagagcaggcttggctttgcgccctacaccgac
agcgagcgccggctcggatggctcctgaccttctccccgtcatcatgggaggatgaggac
actgggaagatatacagctgtgttgacctatacttcgtgtcccaggacggttctacattt
aaagtgaaatacaaatttcccccttacttttatgctgcgactaaggataagatggagtta
gaagtcgaggcatatctcaggcgacgttatgaaggcgacattgctgacatagaaattatt
gagaaagaagatcttgatctaaaaaaccacctttctggtttgaagaggaaatatttgaag
atccagtttgataccgtacagcaattaatgcgtgtgagaagtgacctattgcatgttgtt
gaaaagaatgaagaagaactaaatgctgcagaggcatttgaatcaatttatggtgtaaaa
agggtagaaaggccacaagattacataaattgcatcattgatttgcgtgaatatgatgtt
ccatatcatgttcgttttgctatcgataatgacgtgaggtgtggacagtggtacgatgtt
agcgtatctagctctgatgttttgcttcacagaagggaagatctactacagcgtgcagaa
gttcatgtatgtgcatttgatattgaaaccacgaagctgcctctgaagtttccagatgct
gagtatgacactgtaatgatgatctcttacatgattgatgggcaaggatacctgataatc
aaccgagagtgtgtaggggaagatattgaagatttggagtatacacctaaaccagaattt
gaggggcattttaaagttaagaatgtcgcaaatgagttggatctactcaaagcttggttt
tctcacatgcaagaggttaagcctggtatttatgttacatacaacggcgacttttttgac
tggccatttttggagaagagagctgctcatcatgggattaaaatgaatgaggagattgga
ttccaatgtgataataatcaaggcgaatgccgagctaaattttcttgccatcttgactgt
tttgcttgggtgaagcgagacagttaccttccacaaggaagtcatggtctaaaggctgtt
acaaaagctaagttaggctatgatcctctggaggttaatccagaagatatggttcggttt
gcaatggagcagcctcagacaatggcttcttactctgtatcagatgctgttgcaacatac
tatctatacatgacttacgtccatccatttatcttttcccttgcaaccattatacctatg
tcacctgatgaggttttacggaaaggaagtgggacattgtgtgaaatgctgctaatggtc
caggcattcaaggctaatattatttgtcctaacaagcaccaagctgatctagagaagttc
tacaataaccgtctattggaaagcgaaacttatattggtggtcatgttgagtgtcttgaa
actggtgtatttagatctgatcttcctacgaagttccaacttgaaccgtcagcatgtgag
caactgattgcaaatcttgatcgtgatctgcaatatgccatttccgtagaaggaaaatta
gatattgattctgtcacaaactacgatgaagtcaaggatgccattaaacagaagctagtt
tctttgcgagatcaccctattcgtgaagaatgtccacttatatatcatctggatgttgct
gcgatgtatccaaatatcattttgacaaataggctccagccaccatccatagttaccgat
gtggactgcacagcatgtgatttcaatcgtcctggaaagaattgccttcggacgcttgaa
tgggtatggcgaggagagacctacatggcaaaaaagagtgactatcatcatataaagagg
caaattgagtcagagatgattcaagctggtggggtgacaccttcaaagccttttcttgac
ctctcaaaaccagagcatttactaaaactgaaggatcgtttgaagaagtactgccaaaag
gcatataaaagagtagttgacaaaccaattacagaagtgaggaacgctggaatatgcatg
cgtgaaaattccttctatgtagacacagtacgaagctttcgtgatagaaggtatgagtac
aaaggtcttaacaaatcatggaaaggaaaactggcagaagcaaaagccaatggaaattct
atcaaaattcaggaagcacaggacatggttgtgctctatgattcgttgcaacttgcccac
aagtgtatattgaattcgttttatggatatgttatgcgcaagggtgcaagatggtattct
atggaaatggctggtgttgttacatatactggtgcaaagattatccaaaatgctcgtcta
cttgtagacaaaattggaaagccactggaactagatactgatggcatttggtgtgttctt
cctggttcttttccagagaactttaccttcaagacaaatgctgggaagaagctcacgata
tcctatccctgtgtgatgcttaatgttgatgttgcgagaaacaacactaatgatcaatat
caaacattgaatgacccagtaaataagctatatacaacacacagtgaatgttccattgaa
tttgaggtagatggaccttacaaggctatgattctacctgcctctaaagaggaaggggtt
cttctaaagaaaaggtatgcggtctttaatgaagatggtaccttggcagaacttaaaggt
tttgaaatcaagcgtagaggtgagctgaagctcatcaaagtttttcaggcagaggtattt
gacagatttcttcatggttcaactttagaggaatgctatacagctgttgcttctgttgct
aatcgttggttagacctactggataaccaaggaattgatatttccgacaatgagttgctt
gatttcatatctgagtctagcacaatgagtaaatccctagttgactatggagaacaaaaa
tcatgtgctgtaacaacagcaaaaagactagctgaattcctcggggattcaatggtaaaa
gacaaagggctgcattgccaatacatagttgcccgggagccacagggcactccagtgagt
gagcgtgctattccagtagctatctttgagacggatgctgaaattgcaaagttttattta
agaaaatggtgtaaaatctcctctgaagcgagcatccgatctattgttgactggtcttac
tataagcaacgcctaagctctgctattcagaagattataacgattcctgcagcaatgcaa
aagatttcgaatcctgttcctcgagttcttcatcctgattggttgcacaaaaaggtcaga
gagaaagatgatcgatttcgccagcgcaaactacgtgatatgttcaatcctttggagaag
gacaggggggtgcagaatttggatgggacaggagatatggaagatttattaacgctggat
ggtggtatgagaaaaagtcatgtacccaatggttttggaaaagaaaataaaccaaacgac
gcaccatcaacagaagctggttcaaagcatagcaagaataaacaaaaatctataactagg
tcaaatgaaccccttgccgtacatattcaaaatgatgctgctgatgaacaagttgataga
agtactgattatcaaggatggcttgatgctaagaagagaaaatggaaatatgttcgtgag
caaaaaaagcgtcaaaggttgggtgctgcagtcacttctgatggtcccaccaatgatttg
ttttctgcaaggaatgtcggtcagttacatggcaatgctaggaaccggtctacatttttc
cagaaacaagaattggccctctttagatcacattggcagataatacagcttgcttcgagt
acattgcctggccacttttttgcatgggttgttgctgaggggatcatgttcaagattcct
atcaatgtgccaagagtcttttacctaaactcgaaagctcctgtcacagaagagtttcca
gggaggcgtgtaaagaagattcttccacatggaaggccatgtttcaatctcattgaggtt
gtaactagtgaagaacagttcagggtggagggcaaaaagcttgctgcccatcttgcagag
ccagatgttgagggaatatacgagacgaaaattctgccagagctcaatgccattctccaa
attggttgtgtgtgcaaagtggataagtctgcaaaaagacgaagtatccaagatggatgg
gatcttgctgaattgcaaatgaagacaactgcagagtgttcatacctggaacagaccgtt
tcatttttctatctataccacagcttgtcagaaggaaggggtgtatatgtcatgtacttc
cctacatctttcagaatacatgcagtggttgtcaatccgttccgcaataaagagctatcg
ccatcatttcttgaaaagcaatatcgagatgcttgtcaagctcttggctctctgcatgaa
aacatcactttccttgtggattaccacacatcaattgatgcaggtagcaagcatgtgcaa
agaatgttacttgaatacagacaacaacatcctggacctgtcataggcgtcatagaatgc
cctaaactccaagctctaaagtcagctgtacgggcacttgatgatttcccgtgtgtaacc
attccttgcaatgcacgggataacaactatcaggctcttggttggcaagcgacagctggt
agaacaagcatgcaacgttgtgctgcatcaacccaatggtttaatgaaagaatttcactt
gctagatatgcacatgtcccattgggaaactttgaactggattggcttcttttcaccgct
gacgtgttcttttcaagggcattgcgtgatcaacagcaggtactatggatatctgacgat
ggtattcccgatttaggaggcacatatgaaggagatacttgctttgctgatgaagtcatc
cagcctgctcttacttatcctggtgcgtatagacgagttgctgttgagcttaagatccat
catttggctgtcaattctctcctaaagagcagtcaagtagatgaaatggaaggagggccg
atcggtagctttgcaaatgacatgcctgctggtccaaatggcactgaaactgaattcgat
gatgctaccttatgtctacctgctttccaagtgctgaagcaactcattcagcgatgcatt
tcagatgcagtatcttctggaaatgtgtttgctgatgcaatattgcaacatctctaccgt
tggctttgcagcccacgatcgaaacttcatgacccagctctccatcatcttcttcataat
gtcatgaagaaggtctttgctctcatgttggcagagtttcgaaagcttggagctaatgtc
atctttgcgaacttttctaagataataatagatactggaaaagttgacctgttgtcagca
cgtgcatactgtgatagcttactgaaaacattgcagacaagggatatttttgagtgggtg
gagctggaacctttgcattattggcactccttacttttcatggaccagtataactatggt
ggtattcaggctaaaatgcaaaatgcaacatctgagggcagctcagatggtgataacgat
atcgacatcgtctcaagctggaacatagcagaatacctgcctaaagctacacaagatcac
tttgtcttaattgtatcggagtttttgtatgttccatggaaatacatgaaagaacaagta
gctcttcgatcaactacaagggatgagacctcatgcacaccatctataacaatcatggct
gctgaaaaccttgaggttcaagtcataggatatctccgtgatcagataagtaattacttt
gcagacaagcttctcaggattgtaagtgatatacttcatcatttcaaaggaaaaggcaag
tccgaatcagttgaacttacaaacagagaacctgatcctcacacacataagggagatgct
gcattagagttcattaagcatatatgtgctgttcttgctcttgatcagaatgttcagcat
gatattctgagaatgaggaagaacttgttaaagttagttcgtgtaaaggagtttgctcca
gaagcacagttccaagatccatgtgcctcattcactctccccaatgtgatttgcagctat
tgcaatgattgtcgggatcttgatctctgccgtgattcaacactccaaggtcaggagtgg
aggtgtgctgtgccgcagtgcgggcagccataccatcgtgaacagatggaaaatgcactt
ctacaggtagtccgtcagcgagagaggctctatcacttgcaggatttggtctgcctccgc
tgcaggcaagtgaaagcggcacacttatctgagcagtgctcctgtggaggtgcattccgg
tgcaaggaagaatcatcgcaattcctcagcaagatgcgggttttcctaaatgttgcggtc
agtcaaaagttcgagctgcttcaggatgttgtccaatggattctagaggtcagatga

KEGG   Oryza sativa japonica (Japanese rice): 4331489
Entry
4331489           CDS       T01015                                 
Symbol
OJ1528D07.1, OsJ_09265, OspolD2, POLD2
Name
(RefSeq) DNA polymerase delta small subunit
  KO
K02328  DNA polymerase delta subunit 2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4331489 (OJ1528D07.1)
   03410 Base excision repair
    4331489 (OJ1528D07.1)
   03420 Nucleotide excision repair
    4331489 (OJ1528D07.1)
   03430 Mismatch repair
    4331489 (OJ1528D07.1)
   03440 Homologous recombination
    4331489 (OJ1528D07.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4331489 (OJ1528D07.1)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4331489 (OJ1528D07.1)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    4331489 (OJ1528D07.1)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      4331489 (OJ1528D07.1)
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     4331489 (OJ1528D07.1)
SSDB
Motif
Pfam: DNA_pol_E_B DNA_pol_D_N
Other DBs
NCBI-GeneID: 4331489
NCBI-ProteinID: NP_001404098
LinkDB
Position
3:complement(join(1620697..1620756,1621151..1621218,1621285..1621386,1621552..1621679,1621756..1621847,1621952..1622023,1622118..1622186,1622270..1622353,1622446..1622561,1622666..1622770,1622906..1623029,1623101..1623207,1623879..1624008,1624088..1624120))
AA seq 429 aa
MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLG
LEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTL
AGAIPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLPSINEDKYVVFVSGLSI
GSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHISPRFFNGQAVASKDQ
SRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTFSSCS
NPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPYTD
KDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVAVMLNLRNLECST
LSFSTSFDA
NT seq 1290 nt   +upstreamnt  +downstreamnt
atggagaggaagcaggcggagtacagcaacctcgacgagaggtacgcgatccagggggag
aagtaccaggggcagcagtacagccacatctacttcacgcgactccaccacatgcgcaac
ctcctccacgccctcgtcccctcctggaagccgcaccttcctgttactactgtgttggga
cttgaagaaggaaaggattgcataatcgttggaactttatataagcacatgaaattaaag
ccttccattcttgatgaatattctaaggagaggtctgctattcctcttgttaaaccacac
aatttcatgcatcctgatgatcatctcattctggaagatgaaagtgggagagttacactt
gcaggagccatacctccagcagcatatgttactggagttgtaatagctttacatgggaaa
gaaacaagtgctggcaactttcttgttgaagatattcttgaggctgggattcctcctcaa
attacgttacctagcataaacgaggacaaatatgtggtatttgtgtcgggattaagtatt
gggagtgaaaaattcaatcctctgcaattccaacttcttatagaccatatcacagggcat
ttgggtgatgagaatgagcaatccatagcatccaacatagtacgtgttgtggtggctggg
aattcggtacatatttctccaagattcttcaatggtcaggcagtagcatcgaaagatcaa
tccaggatagctgaaccaatcaaagaattggatataatgctcactcagcttgtggcatca
ttgcctgtggacatgatgcctggatctaatgacccagcaaatttttctttgcctcaacag
cctttgcatagatgcctttttgctggagcagccacttataacactttttcatcgtgctcg
aatccacatcaattcgagcttgatagtgtccggtttattggaacatctggacagaacata
gatgacctctacaagtactctgatgccaaagacaagctggaattcgtggaaagaacactg
cggtggcgtcatcttgctccaactgctccaaacagtctaggatgttatccatacacagac
aaggatccttttctcgttgaaagctgtccccatgtttacttcgtcgggaatcaagataaa
tatgaaactcaattattgcaagggctagaaaaacaaaaagtgaggctgatctgcattcca
agattttgtgatagtggagttgctgtcatgctcaatttgaggaacttggagtgcagcacg
ttgagtttctcaacaagcttcgatgcttga

KEGG   Oryza sativa japonica (Japanese rice): 4337886
Entry
4337886           CDS       T01015                                 
Name
(RefSeq) DNA polymerase epsilon subunit B
  KO
K02325  DNA polymerase epsilon subunit 2 [EC:2.7.7.7]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4337886
   03410 Base excision repair
    4337886
   03420 Nucleotide excision repair
    4337886
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4337886
   03400 DNA repair and recombination proteins [BR:osa03400]
    4337886
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     4337886
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    4337886
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      4337886
SSDB
Motif
Pfam: DNA_pol_E_B Dpoe2NT DNA_pol_D_N
Other DBs
NCBI-GeneID: 4337886
NCBI-ProteinID: XP_015638793
UniProt: B9FML5
LinkDB
Position
5:join(3599469..3599640,3599735..3599915,3600707..3600860,3600948..3601079,3601306..3601383,3601464..3601568,3601657..3601737,3601829..3601959,3602037..3602131,3602446..3602545,3603417..3603531,3603612..3603722,3603923..3604069)
AA seq 533 aa
MAAPSAATRRKLQRKFKLRGFTLKVDALEEAAAFLARFPDAEDDALDLLLDELDKEPLQS
SILDRDAVRRVVALLVEADEAVDAASPAATSARSALRVVDSFVVPRFHYDPIKKVFYEHT
SRLAIHGEAGDKAALYRDRYQVLLQRLARDIYFSKPAFDTVMTEDDNCEITSIQSLIGCT
GRRWIMGVISQLEERQFYLEDLTGAVPIDLSNAKITSGFFVENTVIVAEGELLSNGIFQV
NTCGFPPLEDREASLSMLMGLDFFGGGVIPTEETVRLSTLEKKAMNDMFVILSDVWLDNY
ETMEKLGVVLDGYDSLEAVPSLFVLMGNFCSRPCNLAFNSFEELRLQFGKLGEMIAARSR
LKEHSRFLFIPGPDDAGPSKALPRCALPKYLTEELQKHIPNAIFVSNPCRVKFYTQEIVF
FRQDLLYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCPLPLTVQPIIWSYDHCLRLY
PTPHTIVLGDKSDQKAFKYTGITCFNPGSFANDSTFAAYRPCTKEVELSALES
NT seq 1602 nt   +upstreamnt  +downstreamnt
atggcggcgccgtcggcggccacgcgcaggaagctgcagcgcaagttcaagctgcgaggc
ttcaccctcaaggtggacgccctcgaggaggccgccgccttcctcgcccgcttccccgac
gccgaggacgacgccctcgacctcctcctcgacgagctcgacaaggagccgctgcagtcg
tcgattcttgaccgggacgcggtgcggcgcgtggtggcgctgctcgtcgaggcggacgag
gcggtggatgcggcgtctccggcggccaccagcgcgcgctcggcgctgcgggtggtggat
tcgttcgtcgtgccaaggttccactacgatccgatcaagaaagtcttctacgagcatacc
agcagattagccatacatggagaagctggagataaagcagccctgtacagggacaggtat
caggttctgcttcagaggctagctcgtgatatatacttctctaagccagcttttgacact
gttatgaccgaagatgataattgtgagataacttctattcagtccctaattgggtgcact
ggtcggagatggattatgggggtcatatcacagttggaggaacgtcaattctacttggag
gatcttactggagctgtgccaattgacttatcgaatgctaaaatcacttcaggtttcttc
gttgaaaatactgtaattgtagcagaaggggaattgctttcaaatggcattttccaggta
aatacatgtggattccctcctttagaggatagagaagcatcactttcgatgcttatgggg
ctagatttcttcggtggaggtgtcataccaactgaagaaacagtaaggctatcaacctta
gagaagaaggccatgaatgatatgtttgttatactttcagatgtttggcttgacaattat
gagaccatggagaaattaggtgttgttcttgatggttatgatagtctagaagcagttcct
tccctttttgttttaatgggcaatttctgctcccggccctgcaatctggcattcaattca
tttgaagaactcagattgcagttcggaaagcttggtgagatgattgcagctcgatccagg
ttaaaggaacacagtcgttttttgttcattcctggtcctgacgacgcaggcccttctaaa
gcccttccaaggtgtgcacttccgaaatatctaactgaggaactgcagaagcacatccca
aatgcaatattcgtaagcaacccttgcagggtgaagttttatacacaagaaattgtattt
ttccggcaagacctcctttataggatgcggcggtcttgtctgattcccccaacaacagaa
gaaacaagtgaccctttcgagcatctggtagcaaccatcacccatcagagtcatctttgc
ccattgcctcttacagttcagccaatcatatggagctacgatcattgccttcgactctat
cctactcctcatacgatagtactgggcgacaagagcgaccagaaggccttcaaatacaca
ggaataacttgcttcaaccctggttcttttgctaacgatagcacctttgcagcttaccgt
ccttgcactaaggaggttgagctttctgcattagaaagctaa

KEGG   Oryza sativa japonica (Japanese rice): 4344737
Entry
4344737           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K03505  DNA polymerase delta subunit 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4344737
   03410 Base excision repair
    4344737
   03420 Nucleotide excision repair
    4344737
   03430 Mismatch repair
    4344737
   03440 Homologous recombination
    4344737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4344737
   03400 DNA repair and recombination proteins [BR:osa03400]
    4344737
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    4344737
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      4344737
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     4344737
SSDB
Motif
Pfam: DNA_pol_delta_4
Other DBs
NCBI-GeneID: 4344737
NCBI-ProteinID: XP_015649425
UniProt: Q0J7T7
LinkDB
Position
8:complement(join(3775336..3775571,3775659..3775791))
AA seq 122 aa
MRSGGDVRSFFRQQKAHAAGGVKPTGGVSKKAALPRHHHKPASQATPDRAVDDARRHVEE
AEEEEGRERMAREFDMDMRYGPCLGLTRAQRWRRAAALGLAPPPAVIAVCSDDQPCLWEG
RV
NT seq 369 nt   +upstreamnt  +downstreamnt
atgaggagcggcggcgacgtcaggtccttcttccggcagcagaaggcccacgccgccggc
ggcgtcaagcccaccggcggcgtctccaagaaggcggcgctgccccgccaccaccacaag
cccgcgtcgcaggcgacgccagatcgcgccgtcgacgacgcgaggaggcacgtcgaggag
gcggaggaggaggaggggcgggagaggatggctcgggagttcgacatggacatgcggtac
gggccctgcctcggcctcacccgcgcccagcgctggcgccgcgccgccgcgctcggcctc
gccccgccgcccgccgtcatcgccgtctgctccgacgaccagccgtgcctctgggagggc
cgcgtctag

KEGG   Oryza sativa japonica (Japanese rice): 4347604
Entry
4347604           CDS       T01015                                 
Symbol
P0669G04.6
Name
(RefSeq) uncharacterized LOC4347604
  KO
K03505  DNA polymerase delta subunit 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4347604 (P0669G04.6)
   03410 Base excision repair
    4347604 (P0669G04.6)
   03420 Nucleotide excision repair
    4347604 (P0669G04.6)
   03430 Mismatch repair
    4347604 (P0669G04.6)
   03440 Homologous recombination
    4347604 (P0669G04.6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4347604 (P0669G04.6)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4347604 (P0669G04.6)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    4347604 (P0669G04.6)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      4347604 (P0669G04.6)
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     4347604 (P0669G04.6)
SSDB
Motif
Pfam: DNA_pol_delta_4 zf-CCCH_10
Other DBs
NCBI-GeneID: 4347604
NCBI-ProteinID: NP_001409778
LinkDB
Position
9:complement(join(24734059..24734279,24734364..24734538))
AA seq 131 aa
MASGGMKDFYRQKKKGGPTKASSSSKKKTQHYTGGASVGASDTAQTSALISHGNLDLKDD
FSEQEEQLRLFDMDMKFGPCIGVTRLQRWERASAMGLHPPPHLRDLLLNNTHAGNHNNNG
PSLECLWEGKV
NT seq 396 nt   +upstreamnt  +downstreamnt
atggcttctggtggcatgaaggacttttaccggcagaagaagaaaggaggtcccaccaaa
gcatcgtcatcttccaagaagaaaacacagcattacactggaggggcctctgttggggcc
tcagacactgctcagacatcagcactaatttctcatggtaacctagatcttaaagatgat
ttcagtgagcaagaggagcagttgcgactgtttgatatggacatgaagtttggcccttgc
attggcgttactcgtcttcagcgttgggaacgtgcttctgccatgggtcttcacccacca
cctcatctcagggatctcttactgaacaatactcatgcaggcaatcacaataacaatggt
ccctcccttgagtgcctctgggagggcaaagtctag

KEGG   Oryza sativa japonica (Japanese rice): 4347894
Entry
4347894           CDS       T01015                                 
Name
(RefSeq) DNA polymerase II subunit B4
  KO
K02326  DNA polymerase epsilon subunit 3 [EC:2.7.7.7]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03082  ATP-dependent chromatin remodeling
osa03410  Base excision repair
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4347894
   03410 Base excision repair
    4347894
   03420 Nucleotide excision repair
    4347894
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    4347894
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4347894
   03036 Chromosome and associated proteins [BR:osa03036]
    4347894
   03400 DNA repair and recombination proteins [BR:osa03400]
    4347894
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     4347894
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    4347894
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Chromatin remodeling factors
   CHRAC complex
    4347894
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      4347894
SSDB
Motif
Pfam: CBFD_NFYB_HMF Histone CENP-T_C Amidase Bromo_TP TAF
Other DBs
NCBI-GeneID: 4347894
NCBI-ProteinID: XP_015611896
UniProt: Q652Q3
LinkDB
Position
9:complement(join(27135707..27135843,27136198..27136316,27136812..27137059))
AA seq 167 aa
MAGETGEGGGSHSQPEKQPGQAAAAASMAEAEVEELPKAIVRRLVKEKLAQVAAGGAEVI
VNKDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTS
LQEFRNKNAARRSETTQKKAEKRRKIDKESLPQEQNDAADHGKTDED
NT seq 504 nt   +upstreamnt  +downstreamnt
atggctggggagacgggggaaggtgggggatcccattcccaacctgagaagcagccgggc
caagcggcggcggcggcgtccatggcggaggcggaggtggaggagctgcccaaggccatc
gtgcggcgcctagtgaaggagaagctcgcccaggtcgccgccggaggggccgaggtcatc
gtcaacaaggacgccatgtccgccttcgccgagagcgcccgcatcttcatccactacctc
tccgccactgccaatgacatgtgcaaagaatcaaagaggcagacgatcaacgctgatgat
gtcctcaaggcactcgatgaaatggagttccctgagtttgtagagccccttaatacttct
ttgcaagaatttaggaacaaaaatgccgcccggagatcagaaacaacccaaaagaaagct
gaaaagagaaggaaaatagataaggagtcactgccacaagaacaaaacgatgcagctgat
catggcaagactgatgaggattaa

KEGG   Oryza sativa japonica (Japanese rice): 4349968
Entry
4349968           CDS       T01015                                 
Symbol
OspolD1, POLD1
Name
(RefSeq) DNA polymerase delta catalytic subunit
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4349968 (OspolD1)
   03410 Base excision repair
    4349968 (OspolD1)
   03420 Nucleotide excision repair
    4349968 (OspolD1)
   03430 Mismatch repair
    4349968 (OspolD1)
   03440 Homologous recombination
    4349968 (OspolD1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4349968 (OspolD1)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4349968 (OspolD1)
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     4349968 (OspolD1)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    4349968 (OspolD1)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      4349968 (OspolD1)
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     4349968 (OspolD1)
SSDB
Motif
Pfam: DNA_pol_B DNA_pol_B_exo1 zf-C4pol DNA_pol_B_2 divDNApol
Other DBs
NCBI-GeneID: 4349968
NCBI-ProteinID: NP_001410103
LinkDB
Position
11:complement(join(4442550..4442637,4442744..4442831,4442912..4442985,4443317..4443477,4443550..4443639,4443723..4443797,4443886..4443957,4444036..4444208,4444281..4444395,4444591..4444704,4444899..4444978,4445072..4445159,4445258..4445314,4445428..4445493,4445571..4445666,4445776..4445883,4446258..4446356,4446425..4446544,4447257..4447343,4447593..4447664,4447760..4447826,4448772..4448863,4448948..4449025,4449102..4449239,4449346..4449481,4449569..4449764,4450007..4450166,4450267..4450373,4450466..4450576,4452167..4452476))
AA seq 1105 aa
MSSGGRGGKRRGAPPPGPSGAAAKRAHPGGTPQPPPPAATAAAPVAEEEDMMDEDVFLDE
TILAEDEEALLLLDRDEALASRLSRWRRPALPADLASGCSRNVAFQQLEIDYVIGESHKV
LLPNSSGPAAILRIFGVTREGHSVCCQVHGFEPYFYISCPMGMGPDDISRFHQTLEGRMK
DSNRNSNVPRFVKRIELVQKQTIMHYQPQQSQPFLKIVVALPTMVASCRGILERGITIEG
LGSKSFLTYESNILFALRFMIDCNIVGGNWIEVPAGKYMKAARIMSYCQLELDCLYSDLV
SHAAEGEHSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQPFVRNVMT
LKSCSPIVGVDVMSFDTERDVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAEVLKIV
EFPILGRIRNSRVRVRDTTFSSRQYGMRESKDVAVEGRVQFDLLQAMQRDYKLSSYSLNS
VSAHFLGEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMA
RVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNIKGQASGQDTFEGATVLEARAGFY
EKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESVNKTPSGETFVKPDVQKG
ILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISANSVYGFTGATVGQLPCL
EISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKL
GREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRD
NCLLVKNLVTECLHKILVDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGEDYA
VKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYERSEDPIYVLDNNIPIDPQ
YYLENQISKPLLRIFEPILKNASRELLHGSHTRAVSISTPSNSGIMKFAKKQLTCLGCKA
VISGSNQTLCFHCKGREAELYCKTVGNVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDC
PIFYRRRKAQKDMAEARVQLQRWDF
NT seq 3318 nt   +upstreamnt  +downstreamnt
atgagctcaggcggacgcggcggcaagcggcgaggggcgccgcccccggggccatccggg
gcggcggcgaagcgggcccaccccggtggcaccccgcagccgcctccgcccgccgcgacg
gcggcggcgcccgtggcggaggaggaggacatgatggacgaggacgtcttcctcgacgag
accatcctggcggaggacgaggaggcgttgctgctgctcgaccgggacgaggccctcgcc
tcacgcctctcccgctggaggcgccccgcgctccccgccgacctagcgtccggctgctcg
cgcaatgttgcttttcagcagctggagatagattatgttattggtgagagccacaaagta
ctgctccccaactcatctggtcctgcagctatactcaggatatttggcgtaactagagaa
ggtcacagtgtatgctgccaagtgcatggatttgagccatatttctacatcagttgtcca
atggggatgggccctgatgatatttcacgcttccaccaaacactagaggggaggatgaag
gattcaaataggaacagcaacgtgccaaggtttgtgaagagaatcgaacttgtgcagaag
cagacaatcatgcattaccaaccacagcaatctcagcctttcctcaagatagtggttgct
ttgccaacaatggttgctagttgtcgcggcatcctggaaaggggcataacaattgaaggc
cttggttcgaagagttttctgacatatgaaagcaacattctttttgcacttcgcttcatg
attgactgcaatattgttggtggtaattggattgaagttcctgccggaaagtatatgaag
gcagctcgtatcatgtcctattgtcagctagagttggattgcctatattcggatttggta
agccatgctgctgaaggagaacattctaagatggctccatttcgcatattaagttttgat
attgaatgtgccggtcgcaaaggtcacttcccagaaccaactcatgatcccgttattcag
atagctaacttggtcacccttcaaggagaaggacaaccttttgtacgcaatgttatgacg
cttaaatcatgttctcccattgttggagttgatgttatgtcatttgacacagagagggat
gttctacttgcttggagggatttcatacgtgaagtggaccctgatattattattggatac
aatatctgcaaatttgacttaccctatcttattgagagagctgaagttcttaagatagta
gagtttccaatacttggacgaatcagaaatagtcgtgttcgtgtccgtgacacaactttc
tcttcaaggcaatatggtatgcgtgaaagtaaagatgtagcagtggaaggaagagtacaa
tttgatcttctgcaggctatgcaacgggattacaagcttagttcttattcattaaactct
gtatctgcacatttcctcggggagcaaaaagaggatgttcatcactcaattatatctgat
cttcaaaatgggaattcagagacacgaagacggcttgcggtttattgtttgaaggatgcc
tatcttccacaacgactgctagataagttgatgtatatctacaactatgtggaaatggca
agagtcactggagttcccatttcatttcttctttcaaggggacagagcattaaggtcctc
tcacagctactcaggaaagcaaaacagaaaaaccttgttataccaaatataaagggtcaa
gcgtctggacaggatacctttgaaggtgcaactgttttggaggcaagggctggattttat
gagaaacccattgcgactttggactttgcttcgttgtatccatccatcatgatggcatat
aacctatgctactgtactttggtcccccctgaggatgcccgcaaactcaacctgcctcca
gaaagtgtcaacaaaaccccatctggtgaaacatttgtgaaaccagatgtgcaaaagggt
atacttcctgaaatccttgaagaattgttggctgctcggaaaagggcgaaagcagatttg
aaggaagcaaaggatccatttgaaagggccgttcttgatggtcgtcagcttgccctaaaa
ataagcgcaaactctgtctatggttttactggagcgactgttggtcaattaccttgttta
gaaatttcttcaagtgtgaccagctatggtcgacagatgattgaacatacaaaaaagctt
gttgaagataaattcacgacacttggaggctatgagcacaatgcagaggtcatctatgga
gatactgattctgtaatggtacagttcggtgtttctactgttgaggacgcaatgaagcta
ggaagagaagctgcagactacattagtggaacatttattaagcccatcaagcttgagttt
gagaagatctatttcccttatctactgattagcaagaagagatatgctggtttgtactgg
acaaatcctgagaaatttgacaaaatggacacgaaaggtattgaaacagtgagaagggac
aactgtttattagtaaagaacctggttactgagtgccttcataaaatactagtggacaga
gatgttcctggtgcagttcaatatgtcaagaacaccatttctgatctactaatgaaccgt
gtagacttatctcttctagttataacaaagggtttgactaaaacaggagaggattatgct
gtcaaagctgcccatgtggagcttgctgagagaatgcgaaagagggacgctgctactgct
cctactgttggtgaccgggttccttatgttataatcaaagcagcaaaaggggcaaaggca
tatgagaggtcagaagatcctatttatgttttggataataacataccaatagatccccaa
tactaccttgagaaccaaatcagcaaaccacttttgaggatctttgagccgattctgaag
aatgccagtagagagctgcttcatggaagtcacaccagggctgtttcaatctcaactcct
tcaaatagtggaataatgaaatttgcaaagaaacaattgacatgcctcggatgcaaagca
gttataagtggttccaatcaaacgctttgctttcattgcaagggaagagaagcagagtta
tactgcaaaactgtaggaaacgtttctgagctggagatgctctttgggaggctctggacg
cagtgccaggagtgccaaggctcccttcatcaggacgttctctgcacaagccgggattgt
cctattttctaccgccgaagaaaggcgcagaaggatatggctgaagctagagtacagctt
caacgttgggacttctga

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