KEGG   Oryza sativa japonica (Japanese rice): 112936215
Entry
112936215         CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K03505  DNA polymerase delta subunit 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112936215
   03410 Base excision repair
    112936215
   03420 Nucleotide excision repair
    112936215
   03430 Mismatch repair
    112936215
   03440 Homologous recombination
    112936215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    112936215
   03400 DNA repair and recombination proteins [BR:osa03400]
    112936215
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    112936215
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      112936215
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     112936215
SSDB
Motif
Pfam: DNA_pol_delta_4 SH3BGR
Other DBs
NCBI-GeneID: 112936215
NCBI-ProteinID: XP_025875805
LinkDB
Position
8:complement(join(27376082..27376374,27376467..27376578))
AA seq 134 aa
MAGGGVKGFYRQKKKGGVAKKPISRKKLPPQNCSESQDCGDHDLGDEVEEQLQQFDMDMT
YGPCIGMTRLRRWERAAAMGLRPPPRLRDLLLPPPAPHPLPSSSSSPAKILTGSSGGGGS
TSVQGECLWEGKVS
NT seq 405 nt   +upstreamnt  +downstreamnt
atggccggcggcggcgtgaagggcttctaccggcagaagaagaaaggcggcgtcgccaag
aaaccaatatccagaaagaaattaccgccacagaactgctccgaatcccaagattgcggt
gatcatgatcttggcgacgaggtggaggagcagctgcagcagttcgacatggacatgacg
tacggcccgtgcatcggcatgacgcgcctccgacggtgggagcgcgccgccgccatgggc
ctgcgaccgccgccccgtctccgggacctactcctgccacctccggcgcctcatcctctg
ccatcgtcttcttcgtctccggccaagattctcaccggcagcagcggcggcggcggtagc
acctccgtgcagggcgagtgcctctgggaaggcaaagtgagctag

KEGG   Oryza sativa japonica (Japanese rice): 4344737
Entry
4344737           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K03505  DNA polymerase delta subunit 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4344737
   03410 Base excision repair
    4344737
   03420 Nucleotide excision repair
    4344737
   03430 Mismatch repair
    4344737
   03440 Homologous recombination
    4344737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4344737
   03400 DNA repair and recombination proteins [BR:osa03400]
    4344737
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    4344737
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      4344737
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     4344737
SSDB
Motif
Pfam: DNA_pol_delta_4
Other DBs
NCBI-GeneID: 4344737
NCBI-ProteinID: XP_015649425
UniProt: Q0J7T7
LinkDB
Position
8:complement(join(3775336..3775571,3775659..3775791))
AA seq 122 aa
MRSGGDVRSFFRQQKAHAAGGVKPTGGVSKKAALPRHHHKPASQATPDRAVDDARRHVEE
AEEEEGRERMAREFDMDMRYGPCLGLTRAQRWRRAAALGLAPPPAVIAVCSDDQPCLWEG
RV
NT seq 369 nt   +upstreamnt  +downstreamnt
atgaggagcggcggcgacgtcaggtccttcttccggcagcagaaggcccacgccgccggc
ggcgtcaagcccaccggcggcgtctccaagaaggcggcgctgccccgccaccaccacaag
cccgcgtcgcaggcgacgccagatcgcgccgtcgacgacgcgaggaggcacgtcgaggag
gcggaggaggaggaggggcgggagaggatggctcgggagttcgacatggacatgcggtac
gggccctgcctcggcctcacccgcgcccagcgctggcgccgcgccgccgcgctcggcctc
gccccgccgcccgccgtcatcgccgtctgctccgacgaccagccgtgcctctgggagggc
cgcgtctag

KEGG   Oryza sativa japonica (Japanese rice): 4347604
Entry
4347604           CDS       T01015                                 
Symbol
P0669G04.6
Name
(RefSeq) uncharacterized LOC4347604
  KO
K03505  DNA polymerase delta subunit 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4347604 (P0669G04.6)
   03410 Base excision repair
    4347604 (P0669G04.6)
   03420 Nucleotide excision repair
    4347604 (P0669G04.6)
   03430 Mismatch repair
    4347604 (P0669G04.6)
   03440 Homologous recombination
    4347604 (P0669G04.6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4347604 (P0669G04.6)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4347604 (P0669G04.6)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    4347604 (P0669G04.6)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      4347604 (P0669G04.6)
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     4347604 (P0669G04.6)
SSDB
Motif
Pfam: DNA_pol_delta_4 zf-CCCH_10
Other DBs
NCBI-GeneID: 4347604
NCBI-ProteinID: NP_001409778
LinkDB
Position
9:complement(join(24734059..24734279,24734364..24734538))
AA seq 131 aa
MASGGMKDFYRQKKKGGPTKASSSSKKKTQHYTGGASVGASDTAQTSALISHGNLDLKDD
FSEQEEQLRLFDMDMKFGPCIGVTRLQRWERASAMGLHPPPHLRDLLLNNTHAGNHNNNG
PSLECLWEGKV
NT seq 396 nt   +upstreamnt  +downstreamnt
atggcttctggtggcatgaaggacttttaccggcagaagaagaaaggaggtcccaccaaa
gcatcgtcatcttccaagaagaaaacacagcattacactggaggggcctctgttggggcc
tcagacactgctcagacatcagcactaatttctcatggtaacctagatcttaaagatgat
ttcagtgagcaagaggagcagttgcgactgtttgatatggacatgaagtttggcccttgc
attggcgttactcgtcttcagcgttgggaacgtgcttctgccatgggtcttcacccacca
cctcatctcagggatctcttactgaacaatactcatgcaggcaatcacaataacaatggt
ccctcccttgagtgcctctgggagggcaaagtctag

DBGET integrated database retrieval system