KEGG   Oryza sativa japonica (Japanese rice): 136351388
Entry
136351388         CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    136351388
  09124 Replication and repair
   03420 Nucleotide excision repair
    136351388
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    136351388
   03400 DNA repair and recombination proteins [BR:osa03400]
    136351388
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     136351388
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     136351388
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      136351388
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 Ntox47
Other DBs
NCBI-GeneID: 136351388
NCBI-ProteinID: XP_066159553
LinkDB
Position
8:complement(join(3273765..3276005,3276113..3276371,3276475..3276761,3276839..3277174,3277273..3277414,3277500..3277720,3277800..3277961,3278052..3278210,3278298..3278597,3279116..3279379,3280180..3280263))
AA seq 1484 aa
MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI
DQKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK
FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKKRGGCGAQQPNITV
DGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPIN
LIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMVKINETISKAKDDVKELIMQAHDKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIIVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQ
LGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVP
GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRIT
NDEAPKGEIQDESAEDDVFLKKIESNMSLLRILTEMALRGIPDINKVFIKYGKVNKFEDN
VGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVV
ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVY
AESDYLRGVTENIMLGRLAPIGTGGCALYPKQPSDIGGVPHKEG
NT seq 4455 nt   +upstreamnt  +downstreamnt
atggatgcgaggttcccgtactcgccggccgaggtggccaaggtgcagctggtgcagttc
ggcatcctcagccccgacgagatcaggcaaatgtcagtggtgcagatagagcatgcagaa
accatggaaagggggaagcccaagcctggtggcttgagtgaccctcggttggggactatt
gaccagaagatcaaatgtgagacatgcatggctgggatggcggagtgcccaggccacttt
ggccaccttgagcttgctaagccaatgttccatatcggcttcatcaagactgtactctcc
ataatgcgttgcgtctgcttcaattgttccaagatccttgcggatgaggatgataccaag
ttcaagcaggctcttaaaataaggaacccaaaaaatagactgaaaagaatatatgatgct
tgcaagagcaaaaaagtttgcgcggggggtgatgacctcgatgttcaggagcagcaagat
actgatgagccagtaaagaaaaggggtggctgtggtgctcagcagccaaatatcactgtt
gatggtatgaagatggttgcagagtttaaagcaccaaagaagaaaaacgatgatcaagag
caactccctgaaccagtggagcgaaagcaaatcctctcagctgagagggtgctcaatgtt
cttaaacgtataagtgatgaggactgtcttctattgggtctgaaccctaaatttgcccgc
cctgactggatgattttgcaagtccttccaattcccccaccccctgtgaggccatctgtc
atgatggatacctcttccagaagtgaggatgatttgactcatcaattagctatgataatt
cgacataatgagaacttgaggaggcaagagagaaatggggccccagctcacataataaca
gagtttgctcaattgttgcaatttcacattgcaacatactttgacaatgaacttcctggc
cagccaagggccacacagcgttctggaaggcctattaaatcaatttgcagcaggctgaaa
gcaaaggaaggccgcattagaggaaacttgatgggaaagcgtgttgatttctcagctcgt
actgtcatcacaccagatccgaatattaacattgatgaattgggagtgccatggagtatt
gctttgaacttgacatacccagaaactgtcactccatataacatcgagagattgaaagag
cttgttgaatatgggcctcaccctccccctggcaagacaggtgcaaagtatattatcagg
gaagacggtcagaggcttgatcttcgttatgtgaagaaaagtagtgatcagcatctggag
ctgggatacaaggtggaaaggcacctcaatgatggggattttgttctcttcaaccggcag
cccagtcttcacaaaatgtctatcatggggcatcgcattaaaatcatgccgtattcaact
tttcgcctaaacctgtccgttacttcaccatacaatgcagattttgatggggatgaaatg
aatatgcatgttccgcagtcatttgagaccagagctgaagttctagagttgatgatggtt
ccaaaatgtattgtgtctcctcagtcgaataggcctgttatgggtattgtccaggacacg
cttcttggctgtcgcaaaattactaaaagagatactcttattgaaaaggatgtgtttatg
aacatcttaatgtggtgggaagatttcgatggaaaggtccctgcccctgccattttgaaa
ccaaggcctatttggactgggaaacaagttttcaacttgattattcccaagccaatcaat
ttaattagattttcagcctggcattctgaagctgaaacaggatttattactcctggtgat
actatggtccggatagagaagggagagcttctatctggtacactttgcaaaaagacactt
gggacatcaactggaagtcttattcatgttatttgggaagaggttggtccagatgctgct
cgcaagttcttaggtcatacacagtggctagtcaactactggcttctgcaaaatggtttc
agtattggaattggggatacaattgcagatgctgccaccatggtgaagattaatgagaca
atctcaaaagctaaagatgatgtgaaggagcttattatgcaagctcatgataaacaattg
gaagctgagccaggacgcaccatgatggaatcattcgaaaatagagtaaatcaggttctt
aacaaggctcgtgatgatgctggaagtagtgcccagaagagtttgtctgaaagcaacaac
ctgaaggctatggttactgcaggctcaaaaggaagtttcatcaatatttctcaaatgact
gcttgtgtcggacagcagaatgttgagggcaagcggatcccatttggcttcattgatcga
acgttgccccacttcacaaaagatgattatggtcctgaaagtcgtgggtttgtggagaac
tcttaccttagaggtctgacaccacaagaatttttctttcatgctatgggtggtagagaa
ggtctgattgatactgctgtgaagacctctgagactggatatatccagcgacgacttgtg
aaggctatggaagatatcatagtgaaatatgatggtacggtaagaaattccttgggagac
gtcattcagttcttatatggagaagatggcatggatgctgtttggattgagtcacagaag
ttggattccttgaagatgaagaagggtgagtttgataatgtatttcgttatgaactggac
gatgagaactggaggccaaattacatgttaccagaacatgttgatgatttgaagaccatt
cgtgagtttagaaatgtgtttgaagcagaggttcagaagctagaagctgaccggttccag
cttggttctgagattgccacaactggtgataatacatggcctatgcctgtcaacctcaaa
cggcttatctggaatgcacagaagacattcaagattgatctcagaaggccttctgacatg
cacccaatggaaattgtggaggcaatagataagctgcaagaaagactgaaggttgttcct
ggtgatgatgctatgagtattgaggctcagaagaatgcaactttgttcttcaatatcctg
cttcgaagcacattcgctagcaagagggtcttgaaggagtacaggcttacaaaggaagct
tttgaatgggttattggtgagattgaatcgagattccttcagtctttggtggctcctggt
gaaatgattggatgcgtagctgcacagtccattggagaaccggcaactcagatgaccctg
aatacttttcattatgctggtgtcagtgccaagaatgtcactcttggagttcccaggctg
agagagatcattaatgttgctaagaagataaaaactccatcattgtcagtttacctaaag
cctgaggtgaacaagaagaaagaactggctaagaatgtccaatgtgccttagagtacact
actctgcgcagtgtgacacatgctacagagatatggtatgatcctgatccactgggaacc
attattgaagaagatgttgaatttgtccggtcctattatgaaatgcctgatgaggatatt
gacccagataaaatttcaccgtggctgctgcgtatcgagctgaatcgtgagatgatggtt
gataagaagttgagcatggctgatattgcagagaagatcaatcatgaatttgatgatgac
ttgtcatgcatatttaatgatgataatgcagataaactgatccttcgtgtccgcatcaca
aatgatgaagctccaaagggagaaatacaagatgagtctgctgaggatgatgtcttcctc
aagaagattgaaagtaacatgagtctgctgaggatattgacagagatggcacttcgtgga
attccagatattaacaaagtttttatcaaatatgggaaggtcaataaatttgaggacaat
gttggcttcaaagcagataatgagtggatgcttgatacggaaggtgttaatctcttggct
gtcatgtgccatgaagatgttgatgctactaggacaacaagtaaccatttgatcgaagta
attgaggttcttggaatcgaggctgttcgtcgagctctcttggatgagctgcgggtggtc
atatctttcgatggttcttatgtcaattacagacatctggccattctttgtgatacaatg
acatacagagggcatctgatggctattacaaggcatggtatcaaccgtaatgacacaggg
cctcttatgagatgttcctttgaagagacggtggatatcttgcttgatgctgctgtatat
gctgaatctgactacctgagaggtgtcactgagaacattatgcttggccggcttgctcct
atcggtacaggaggctgtgcattgtatccgaaacaaccttcggatataggaggagttccg
cataaggaaggatga

KEGG   Oryza sativa japonica (Japanese rice): 136357350
Entry
136357350         CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 12-like
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    136357350
  09124 Replication and repair
   03420 Nucleotide excision repair
    136357350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    136357350
   03400 DNA repair and recombination proteins [BR:osa03400]
    136357350
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     136357350
  RNA polymerase III system
   RNA polymerase III
     136357350
  RNA polymerase I system
   RNA polymerase I
     136357350
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      136357350
SSDB
Motif
Pfam: DNA_RNApol_7kD A2L_zn_ribbon DUF5816 zf-Mss51 Zn-ribbon_8
Other DBs
NCBI-GeneID: 136357350
NCBI-ProteinID: XP_066168666
LinkDB
Position
7:complement(join(300533..300555,301524..301616,302077..302149))
AA seq 62 aa
MQHDPSSPAPMDPQQPKPVSYLCTDCGTETLLKPTDVVQCHECGCRILCKKRTRQVVQYE
AR
NT seq 189 nt   +upstreamnt  +downstreamnt
atgcagcacgaccctagctcaccggcaccaatggatcctcagcagccgaaacccgtcagc
tatctatgcacagattgtggaactgagaccttactcaaaccgactgatgttgtccagtgc
catgaatgtggctgtcgcatcctctgcaagaagcgaacccgccaagttgttcagtatgaa
gcgcgctga

KEGG   Oryza sativa japonica (Japanese rice): 4327549
Entry
4327549           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4327549
  09124 Replication and repair
   03420 Nucleotide excision repair
    4327549
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4327549
   03400 DNA repair and recombination proteins [BR:osa03400]
    4327549
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     4327549
  RNA polymerase III system
   RNA polymerase III
     4327549
  RNA polymerase I system
   RNA polymerase I
     4327549
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4327549
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat NA-iREase1 CTLH
Other DBs
NCBI-GeneID: 4327549
NCBI-ProteinID: XP_015649715
UniProt: Q5VQW7 A0A979HJL6
LinkDB
Position
1:complement(join(34770849..34770974,34771756..34771869,34772000..34772179,34772922..34773134))
AA seq 210 aa
MSAGLVTEEVMVGRLVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGESFHREDLLI
NKYKKNDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQE
LEPKIHLEIFQEAELLINIKEHVLVPEHQVLNNEEKKTLLERYTLKETQLPRIQITDPIA
RYYGLRRGQVVKIIRPSETAGRYVTYRYVV
NT seq 633 nt   +upstreamnt  +downstreamnt
atgtcggcggggctcgtgacggaggaggtgatggtggggcggctggtgcggatccggcgg
acggtgatgcagatgctgcgggacagagggtacctggtggtggagcacgagctcgccatg
ggccgccgcgacttcctccgcaagtacggcgagtccttccaccgcgaggacctcctcatc
aacaagtacaagaagaacgatccctccgaccagatatacgttttcttccctaacgatgac
aaggtgggaatgaaacacataaagaagtacgtcgagatgatgaaagctgagaacgtctcc
agagcggtattggttcttcaacagaacctcactccatttgcaaggtcatttcttcaagaa
ttagagccaaagatccacttggaaattttccaggaagccgaattgcttataaatatcaag
gaacatgttctcgttcctgaacatcaagtgcttaacaatgaggaaaagaagacattattg
gagcggtacactctaaaggaaactcagcttccaagaatacaaattacggaccctattgca
aggtactatggcctcagacgaggacaggttgtgaagatcatcaggcccagcgagacagcc
ggcagatatgttacatatcgttatgttgtataa

KEGG   Oryza sativa japonica (Japanese rice): 4328083
Entry
4328083           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4328083
  09124 Replication and repair
   03420 Nucleotide excision repair
    4328083
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4328083
   03400 DNA repair and recombination proteins [BR:osa03400]
    4328083
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     4328083
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4328083
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 4328083
NCBI-ProteinID: XP_015627142
UniProt: A3A2G2 Q6ZGM1
LinkDB
Position
2:complement(join(901749..902128,902206..902254))
AA seq 142 aa
MSGEEEENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQHMSDGDPSSQVSQVFEKSL
QYVKRFSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSDEASALVPSLRSGGRFV
GDPGSEKIDKMLNDLSLIKKFE
NT seq 429 nt   +upstreamnt  +downstreamnt
atgtccggcgaggaggaggagaacgcggcggagctcaagatcggggaagagttcttgaag
gccaagtgcctgatgaactgcgaggtggcgataatcctggagcacaagtacgagcagatc
cagcacatgtcggacggggacccgtcgtcgcaggtgtcgcaggtgttcgagaaatcgctg
cagtacgtgaagcggttcagccggtacaagaacccggacgcggtgaggcaggtgagggag
acgctgagccgctacggcctcgccgagttcgagctctgcaccctcggcaacctctgcccc
gacaccagcgacgaggcctccgccctcgtcccctccctccgctccggcggcaggttcgtc
ggcgaccccggcagcgagaagatcgacaagatgctcaacgacctctcccttatcaagaag
ttcgagtag

KEGG   Oryza sativa japonica (Japanese rice): 4330570
Entry
4330570           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4330570
  09124 Replication and repair
   03420 Nucleotide excision repair
    4330570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4330570
   03400 DNA repair and recombination proteins [BR:osa03400]
    4330570
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     4330570
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4330570
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 4330570
NCBI-ProteinID: NP_001403779
LinkDB
Position
2:complement(join(30545782..30545856,30545942..30546010,30546087..30546120,30546234..30546311,30546429..30546540,30546837..30546935,30547108..30547200,30548255..30548323,30550106..30550172))
AA seq 231 aa
MAERGSRGFSAASKGKAIASKKGSLRQNSSANIPHVNIDSDSDSEGFVEELPRVNSKTNG
KAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSDAELKLELDMPPNSCILMN
CEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVKQVLDPLRKYGV
SDGEMCLIANVGPETIEEVYALVPSLKATRSLNESPIMEALTALADIKAAK
NT seq 696 nt   +upstreamnt  +downstreamnt
atggcggagaggggatcgaggggcttctccgcggcctccaaggggaaggccatcgcgtcc
aagaaaggttcacttaggcaaaacagctctgccaatatcccgcatgttaatattgattcc
gattctgattctgaaggtttcgtggaagaactgcctcgtgtcaactctaaaacaaatggg
aaggctgcatctgagagcctaaaaactggcgggaaggcctcatctaaaggacaaactggc
aaaggagggaatgctggcaaaggtggaaagggttctgcatcagctcgagtttctgcaaag
tctgatgcagagctaaagcttgagctcgatatgcctccaaactcttgcattttaatgaat
tgtgaagtagcagaactattgcaagaaattcatgagcatatggctatcttatcagaggat
ccaaagatcaaaattccagagtcatttgataaggctttccaatatgtgaaagaaggaaat
cagttttccaccgcacagtctgtgaaacaagtcctagaccctcttagaaaatatggtgtt
agtgatggagagatgtgcttgatagcgaacgttggacctgagaccattgaagaggtttat
gcgctagtaccatccctgaaggccactagatcactcaacgaaagtcccatcatggaggct
ctcactgcgcttgctgacataaaagctgctaagtga

KEGG   Oryza sativa japonica (Japanese rice): 4331295
Entry
4331295           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 9B
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4331295
  09124 Replication and repair
   03420 Nucleotide excision repair
    4331295
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4331295
   03400 DNA repair and recombination proteins [BR:osa03400]
    4331295
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     4331295
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4331295
SSDB
Motif
Pfam: TFIIS_C RNA_POL_M_15KD Lep_receptor_Ig CpXC zinc_ribbon_4 DNA_RNApol_7kD
Other DBs
NCBI-GeneID: 4331295
NCBI-ProteinID: XP_015629296
UniProt: A0A8J8YLZ7 Q10T38
LinkDB
Position
3:join(155368..155396,155475..155550,155617..155856)
AA seq 114 aa
MSTMKFCRECNNILYPKEEKDRRLLLFACRNCEHQEVSESKCVYRNEVAHAAGERTQVLQ
DVASDPTLPRTKTVRCAACGHGEAVFFQATARGEEGMTLFFVCCNLTCAHRWRE
NT seq 345 nt   +upstreamnt  +downstreamnt
atgagcaccatgaagttttgccgcgagtgcaacaacatcctgtaccctaaggaggagaag
gaccggcggctgctgctgttcgcgtgccggaactgcgagcaccaggaggtatcggagagc
aagtgcgtgtatcggaacgaggtggcgcacgcggccggggagcggacgcaggtgctgcag
gacgtggcgtcggacccgacactgccgcgcacaaagacggtgaggtgcgccgcctgcggg
cacggcgaggccgtcttcttccaggccaccgcccgcggcgaggagggcatgaccctcttc
ttcgtctgctgcaacctcacctgcgcccaccgatggagggaatga

KEGG   Oryza sativa japonica (Japanese rice): 4333343
Entry
4333343           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 6A
  KO
K03014  DNA-directed RNA polymerases I, II, and III subunit RPABC2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4333343
  09124 Replication and repair
   03420 Nucleotide excision repair
    4333343
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4333343
   03400 DNA repair and recombination proteins [BR:osa03400]
    4333343
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     4333343
  RNA polymerase III system
   RNA polymerase III
     4333343
  RNA polymerase I system
   RNA polymerase I
     4333343
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4333343
SSDB
Motif
Pfam: RNA_pol_Rpb6 Merozoite_SPAM
Other DBs
NCBI-GeneID: 4333343
NCBI-ProteinID: XP_015631727
UniProt: Q6F2V1 A3AJZ4
LinkDB
Position
3:complement(join(22496168..22496237,22496319..22496386,22497747..22497798,22497892..22498061,22498139..22498172,22499478..22499512))
AA seq 142 aa
MADDDYNDMDMGYEDEPPEPEIEEGAEEEPENNEDGPDEVVGAEAEDKEQEKTQRPRKTS
KYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRARKIPFTIRRYLPDGS
YEDWGVDELIVEDSWKRQVGGG
NT seq 429 nt   +upstreamnt  +downstreamnt
atggcggacgacgactacaacgacatggacatggggtatgaggatgagccaccagaacct
gagattgaggaaggggctgaagaggaacctgagaataacgaggatggccctgatgaggtt
gtaggggcagaggctgaagataaggaacaagaaaaaactcagcgcccacgcaaaacgtca
aagtatatgacaaagtatgagcgtgcccgcatcctgggtacacgtgcattacagataagc
atgaatgctccagttatggttgagcttgagggagaaactgatcctcttgagattgccatg
aaagagctgagagcacgcaagatcccattcacaattaggcggtacttacctgacggaagc
tatgaggactggggcgttgacgagcttattgtggaggactcctggaaacgccaggttgga
ggcggctaa

KEGG   Oryza sativa japonica (Japanese rice): 4333571
Entry
4333571           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
  KO
K03010  DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4333571
  09124 Replication and repair
   03420 Nucleotide excision repair
    4333571
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4333571
   03400 DNA repair and recombination proteins [BR:osa03400]
    4333571
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     4333571
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     4333571
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4333571
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 4333571
NCBI-ProteinID: XP_015631661
UniProt: Q10G20
LinkDB
Position
3:join(25898161..25898508,25900067..25900288,25900360..25900650,25900857..25901054,25901182..25901246,25901329..25901415,25901529..25901649,25901741..25901785,25901862..25901999,25902112..25902184,25902264..25902340,25902423..25902530,25902649..25902765,25903065..25903220,25903321..25903422,25903577..25903702,25903778..25903855,25903931..25904026,25904133..25904248,25904322..25904391,25904471..25904524,25904603..25904746,25904838..25905137,25905321..25905743,25905857..25905970)
AA seq 1222 aa
MEDDEYEEGMEMEMGGHHHPHHGGGYGAEEYGAVGGEEMEDEEADGDAPDEEEITQEDAW
AVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHK
ISFGQIYLSKPMMTEADGETATLFPKSARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTET
MEYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMS
TNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPY
IRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIG
KRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAE
DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITS
GLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN
SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQ
AAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRP
LFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDTEEEETTMISMTINDLIG
ARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNY
QLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSS
IDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRV
SGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVR
MRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLI
ECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFL
GPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFL
KERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELM
AMAIAPRMLTQDNKTGKDQKKR
NT seq 3669 nt   +upstreamnt  +downstreamnt
atggaggacgacgagtacgaggaggggatggagatggagatgggcgggcaccaccacccg
caccacggcggcgggtacggcgccgaagagtacggggccgtcggcggggaggagatggag
gacgaggaggcggatggggacgcccccgacgaggaggagatcacccaggaggacgcctgg
gccgtcatctccgcctacttcgaggagaagggcctcgtgcgccagcagctcgactccttc
gacgagttcatccagaacaccatgcaggagatcgtcgacgagtccgccgacatcgagatc
cgccccgagtcgcagcacaaccccggccgccaggccgagttcgccgagacactccacaag
atcagctttggacaaatctatctgagtaaaccaatgatgacagaagctgatggagagaca
gctactttatttccaaaatcggcaaggctccgaaacctaacatactcggcgccactatat
gttgatgtatcatacagagttatgaaaaaaggacatgactgtgaagaggttacagaaact
atggagtacccaaaagtctttattggaaaggttcctatcatgttgcgttctagttattgc
acactgtttcaacagtccgaaaaggatcttacagaacttggagagtgcccttatgaccaa
ggagggtattttataatcaatggtagtgaaaaagtccttattgcccaggagaagatgagc
accaaccatgtctatgtgtttaagaagaggcagcctaataaatacgcatacgtggctgaa
gtccgttctatggcagagaaccagaatagacctgctagtagtatgtttgtgcggatgctt
tctagggcaggcgcgaaagggggttcatctggtcaatatatacgtgctactttgccttat
atccgtgcagacattccgatcatcattgtgttccgagcattaggatttgttgctgataaa
gatatattagagcacatatgctatgatttctctgatacacaaatgatggaattgctacgc
ccatctttagaggaagctttcgtcattcagaatcagcaggttgctctggattacattgga
aagcgtggagctactgttggtgtaactaaagaaaagagaattaagtatgccaaagagata
cttcaaaaagaaatgttaccccatgttggtgtgggtgaattctgtgaaaccaaaaaggcg
tactactttgggtacattattcatcgtctgctgatgtgcgctcttggtcgaagagctgaa
gatgacagagatcattatggcaacaaaagactggatcttgcaggtccattgcttggagga
ctgtttagaatgcttttcagaaagttgacaagggatgtgaggtcatatgtgcaaaagtgt
gtggataatggaaaggaagtcaatctgcaatttgctattaaagccaaaaccattactagt
gggttgaagtattcccttgctactggaaactggggacaggctaaccaagctggtaccagg
gctggtgtttctcaggtgcttaatcgccttacctatgcatctacattatctcatctgcgg
aggcttaactctccaattgggcgtgaagggaaattggcaaaacctcggcaattgcataat
tctcattggggaatgatgtgccctgctgaaacacctgagggacaagcttgtggtttggtt
aaaaatcttgcattgatggtgtatatcactgttggttctgctgcaaatcctattttggaa
tttttggaggagtggggcacagaaaattttgaggagatatcaccagccgtcattccacaa
gctgctaaaatttttgtcaacggttgttgggttggaattcacaggaaccctgacctgttg
gtgaagactcttaggcgtttgagaagacagattgatgtcaacactgaagttggtgtggtt
cgtgatattcgtcttaaagaactcagactttatacagactatgggcgttgcagtcgtcca
ctgtttattgttgaaaaccaaaggcttcttattaaaaagagacatatccgagcgttgcag
caaagggagacacctgaggaaggttggcatgacttagttgcgaaaggatttattgagtac
atagatactgaagaggaagaaactactatgatctccatgaccattaatgaccttattggt
gcaagacacaatccagaggaggcgtactctgaaacttacacacattgtgagattcatcct
tcattgatacttggtgtctgtgcctcgattattccttttccagatcataaccagtcacct
cgtaatacatatcagtctgctatgggaaaacaagcaatgggaatctatgttaccaactat
cagttaagaatggacacattggcctatgtgctatactacccacaaaagcctcttgttact
actcgtgctatggaacatttgcacttcagacagttaccagctggcattaatgcaattgtt
gctattgcatgctactctggatataatcaagaagattcggttattatgaaccaatcttca
atagatcgtggattcttccgatctctgtttttccgctcatacagagatgaggaaaagaag
atggggactcttgtcaaagaggagtttggccgtccaaatagggagaatactatgggaatg
cgtcatgggtcatatgataaactagatgatgatggacttgcaccaccaggtacaagggta
tctggtgaagatgtcattattgggaagacatctcctattccacaagatgatgcccaaggg
caagctactagatacacaaagcgtgatcacagtacttcgctgcgccacagtgaaagtggg
atggtggatcaggttctcctaacaacaaatgctgatggtttaagatttgttaaggttaga
atgcgatcagttcgtataccacagattggggataagtttagtagtaggcatggtcagaaa
ggaactgtgggaatgacttatacacaagaggacatgccatggactattgaaggcatcaca
cctgatattattgtgaatccacatgctattccatcccgtatgactattggtcaactgatt
gagtgtattatgggtaaagttgctgctcacatgggaaaagaaggagatgcaactcctttc
actgatgttactgtggataacatcagcaaagcacttcataaatgtggttatcagatgcgt
ggattcgagaccatgtacaacggtcacactggaagaaaattaactgccatgattttcctt
ggtcctacttattaccagagacttaagcacatggtggatgacaagattcactctagaggc
cgtggtcctgtgcagatacttaccagacaacctgcagaggggcgctcacgcgatggtggt
ctccggtttggagagatggagagggactgtatgattgctcatggcgctgcatttttcctt
aaggaaaggttatttgaccagagtgatgcgtacagagtccatgtatgcgagaagtgtggg
cttattgctattgctaatctcaagaagaattcctttgagtgcagagggtgcaagaacaaa
accgacattgtccaagtgcatataccctacgcgtgtaagcttctgttccaggagcttatg
gcgatggccatcgctcccaggatgctcactcaggataacaaaactgggaaggatcagaag
aaacgttga

KEGG   Oryza sativa japonica (Japanese rice): 4334766
Entry
4334766           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 8B
  KO
K03016  DNA-directed RNA polymerases I, II, and III subunit RPABC3
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4334766
  09124 Replication and repair
   03420 Nucleotide excision repair
    4334766
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4334766
   03400 DNA repair and recombination proteins [BR:osa03400]
    4334766
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     4334766
  RNA polymerase III system
   RNA polymerase III
     4334766
  RNA polymerase I system
   RNA polymerase I
     4334766
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4334766
SSDB
Motif
Pfam: RNA_pol_Rpb8 BRD4_CDT
Other DBs
NCBI-GeneID: 4334766
NCBI-ProteinID: XP_015633016
UniProt: Q84SP5 Q75LB1
LinkDB
Position
3:complement(join(36536381..36536492,36537031..36537134,36537328..36537485,36538016..36538088))
AA seq 148 aa
MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL
VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG
LLVMLKGDPSSAANFELDQRLFLLMRKV
NT seq 447 nt   +upstreamnt  +downstreamnt
atggccgagtttctcttcgaggacatcttcactgtcaccaggctcgaccctgatggcaag
aagtttgacagagtttctcgtatcgaagctcgcagtgaccagttcgatatgtacatgcag
ttagatgttgccacagatgtctatcctatgcatccaggtgacagatttaccatggtcttg
gttcctactttgaacttagatggtaccccagatagcgccttctttacacaggctggcagg
aaaactctggctgacaaatatgagtatgtcatgcatgggaagctttataagatctcagaa
gacaaagacacctctgatcaaaatgctaaaaaagtggagatgtatgcatcatttggtggc
ctcctagtgatgcttaagggtgatccctccagtgctgcgaattttgagctggaccagagg
ctgttcctacttatgcgcaaggtgtag

KEGG   Oryza sativa japonica (Japanese rice): 4337831
Entry
4337831           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4337831
  09124 Replication and repair
   03420 Nucleotide excision repair
    4337831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4337831
   03400 DNA repair and recombination proteins [BR:osa03400]
    4337831
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     4337831
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     4337831
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4337831
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R CCDC-167 PspA_IM30
Other DBs
NCBI-GeneID: 4337831
NCBI-ProteinID: XP_015638336
UniProt: Q0DKN9
LinkDB
Position
5:complement(join(2949257..2949311,2951102..2951173,2951281..2954441,2954543..2954801,2954888..2955174,2955251..2955586,2955690..2955831,2955905..2956125,2956207..2956368,2956445..2956603,2956688..2956987,2957662..2957925,2958730..2958816))
AA seq 1834 aa
MDAARFPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGT
IDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDI
KFKQALKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNIT
VDGMKMVAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPKFA
RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQI
NLIRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQ
LEAEAGRTTMESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQM
TACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQ
KLDSLKMKKAEFDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRF
QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVV
PGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHL
KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDED
IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI
TNDEAQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFK
TEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD
PLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISG
TPYHQGMMSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPP
VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSP
SSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTS
PSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
SAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYS
PTSPSYSQPSPSYSPTSRVEEEAHEEAEEEEPKR
NT seq 5505 nt   +upstreamnt  +downstreamnt
atggatgctgcgaggttcccgtactcgccggccgaggtggccaaggtggaggcggtgcag
ttcggcgtcctcagccccgacgagatcagacaaatgtcggtggtgcatatagagcatgca
gagactatggaaaaggggaagcccaagcctggtggcttgagtgaccctcggatggggaca
attgaccggaagatcaagtgtgagacatgcatggctgggatggcagagtgcccaggccac
tttggccaccttgagcttgctaagccaatgttccacatcggcttcatcaagactgtactc
tccataatgcgctgcgtctgcttcaattgctccaagatccttgcagatgaggatgatatc
aagttcaagcaggctcttaaaatcaggaatccaaaaaataaactaaaaagaatatatgat
gcttgcaagaacagaaagatctgtgcaggcggtgacaatcttgatgttcaggagcaacaa
ggtactgatgatccagtgaagaaaaggggtggctgtggtgctcagcagccgaatatcact
gttgacggtatgaagatggttgcagagtataaagcaccaaagaagaaaaacgatgaccaa
gagcaactccctgaacctgtggaccggaagcaaatcctctctgctgagagggtccttaat
gttcttaaacatataagtgacgaggactgtcttctattgggtctgaaccccaaatttgcc
cgtcctgattggatgattttgcaagtccttccgattcctccaccccctgtgagaccatct
gtaatgatggatacttcttccagaagtgaggatgatttgactcatcaattagcaatgata
attcgacacaatgagaacttgaggaggcaagagagaaatggagccccagctcacataata
acagagtttgctcagttattgcaattccacattgcaacatactttgacaatgaacttcct
ggccagccaagggccacacagcgatctggaaggcctattaaatcaatttgcagcagactg
aaagcaaaggaaggccgcattagaggaaacttgatggggaagcgtgttgatttctcagct
cgtactgtcatcacaccagacccgaatattaacattgatgaattgggagtgccatggagt
attgctttgaacctgacatacccagaaactgttactccatataacatcgagaggttgaaa
gaacttgtagaatatgggccccaccctccccctgggaagacaggtgcaaaatacattatc
agggaagacggtcagaggcttgatcttcgttatgtgaagaaaagtagtgatcagcatctg
gagctgggttacaaggtggaaaggcacctcaatgatggggattttgttcttttcaatcgg
caacccagtcttcacaaaatgtctatcatggggcatcgcattaaaatcatgccctattca
actttccgcttaaacttgtccgtcacttcgccgtacaatgcagattttgatggggatgaa
atgaatatgcatgttcctcagtcatttgagaccagagctgaagttctagagttgatgatg
gttccaaaatgtattgtgtctcctcaatcgaacaggcctgttatgggtattgtccaggac
acgcttcttgggtgtcgcaaaattactaaaagagatactcttattgaaaaggatgtattt
atgaacatcttaatgtggtgggaagattttgatggaaaggtccctgcccccgccattttg
aaaccaaggcctatttggactgggaaacaagttttcaacttaattattcccaagcaaatc
aatttgattagattttctggctggcattctgaagctgaaacaagatttattactcctggt
gatactatggtccggatagagaagggagagcttctatctggtacactttgcaaaaagaca
cttggaacatcaactggaagtcttattcatgttatttgggaagaggttggtccagatgct
gctcgcaagttcttaggtcatacacagtggctagtcaactactggcttctgcaaaatggt
ttcagtattggaattggggatacaattgcagatgcagccaccatggagaatattaatgag
acaatctcaaaagctaaaaatgatgtgaagaaacttattaagcaatttcgtgataaccaa
ttggaagctgaggcaggacgcaccacgatggaatcatttgaaaatagagtaaatgaggtt
cttaacaaggctcgtgatgttgctggaagtagtgccgagaagagtttgtctgaaagtaac
aatctgaaggctatggccaccgcaggctcaaaaggaactttcatcaatatttcacagatg
actgcttgtgtcggacagcagaatgttgagggcaagcggatcccatttggcttcaccaat
cgaacattgccccacttcacgaaaaatgactatggtcctgaaagtcgtgggtttgtggag
aactcttaccttcgaggcctgacaccacaagaatttttctttcatgctatgggtggtaga
gaaggtctgattgatactgctgtgaagacctcggaaactggatatatccagcgacgactt
gtgaaggctatggaagatatcatggtgaagtatgatggtactgttagaaattctttggga
gatgtcattcagttcttatatggagaagatggcatggatgctatttggattgagtcacag
aagttggactccttgaagatgaaaaaggctgagtttgataatgtatttcgttatgaactg
gatgatgagaactggaagccaaactacttgtcgactcaacatgctgaggatttgaagacc
atcagtgagattagaaatgtgtttgaggcagaggttcagaagctagaagctgaccggttc
cagcttggcactgagattgctacaactggtgataatacatggcctatgcctgtcaatctc
aagcggcttatctggaatgctcagaagacattcaagattgatctgagaaggccttctgac
atgcacccaatggaaattgtggatgcaatagataagctgcaagaaagacttaaggttgtc
cctggtgacgatgatatcagtattgaggctcagaagaatgcaactttgttcttcaatatc
ctgcttcgaagcacatttgctagcaagagggtcttgaaggagtacaggcttacaaaggaa
gcttttgaatgggttattggtgagattgaatcgagattccttcaatctttagtggctcca
ggtgaaatgatcggatgtgtagctgcacagtccatcggagaaccagcaactcagatgacc
ctgaatactttccattatgctggtgtcagtgccaagaacgttacccttggtgttcccagg
ctgagagaaatcattaatgttgctaagaatataaaaactccatcattgtcagttcaccta
aagcctgaggtgaacaagaagaaggaattggcgaagaatgtccaatgtgccttagagtac
actactctgcggagtgtgactcatgctactgagatatggtatgatcctgatcctctggga
accattattgaagaagatgctgaatttgtccagtcctactatgaaatgcctgatgaggac
attgaccctgataaaatttctccatggctgctgcgtattgagctgaatcgtgagatgatg
gttgataagaaattgagcatggctgatattgcagagaagatcaatcatgaattcgatgat
gacttgtcatgtatatttaatgatgataatgcagataaactgatccttcgtgtccggatc
acaaatgatgaagctcaaaagggagaaatacaggatgaatatggtgaggatgatgtcttc
ctcaagaagattgagagtaacatgttgacagagatggcccttcgtggaattccaggtatt
aacaaagtgtttatcaaagaggggaacgtcaataaatttgaggacaatgatggcttcaaa
acagagaaggggtggatgcttgatacagaaggtgttaatctcttggctgtcatgtgccat
gaagatgttgatgctactaggacaacaagtaaccatttgattgaagtaattgaggttctt
ggaatcgaggctgtccgccgagctctcttggatgagctgagggttgtcatatcttttgat
ggatcttatgtcaactacaggcatctggccgttctttgtgatacaatgacatacagggga
catctgatggctattacaaggcatggtatcaaccgtaatgacacagggcctcttatgaga
tgttcttttgaagagactgtggacatcttgcttgatgctgctgtatatgctgaatctgac
cccctgagaggtgtcagcgagaacattatgcttggccagcttgctcctataggtacagga
ggctgtgatctgtatctgaacgatcagatgctgaagcaggccatcgagcttcaactccca
agctatgttgaaggcctggactttggcatgatgacatcagcatgctcgcccatctctggg
acaccatatcatcaagggatgatgtcgccaagttacctgctgagtccagacatcagggct
tcccccactgcagcagatgctcagttctcgccgtatgttggaggaatggctttctcaccc
gtatcttcaccaggcaactacactccttcgtcagggggtggttacagtccatctcctccc
gtatgtactccagggccaggaagcttcacctcttcatcaccatataatcctgtctctcct
ttttactcgcctgccagtccattatcatgcccacttaccagtccgtcatatgtgcctacc
agtctaccacactcaccaacatctccaatatacagcgctacatctcctatctacagccct
tcatctcctatctacagccctacatcactaagttacagtcccacatcaccagtttatagt
ccgacttctcctgtatataacccaacttcttctgcatacagccccacatcaccatcttat
aaccctacatcgccgtcttacagttacagccccacatcaccatcttatagccccacatcg
ccgtcttacagttacagccccacatcaccatcttatagccccacatcgccgtcttacaat
tacagccccacatcaccgtcatatagcccaacatcgccgtcttacagccccacatcacca
tcatacagcccaacatcgccgtcttacagtccgacgtcaccctcatatagtccgacatcg
tctgcatacagccctacttcgcctgcatacagcccaacatctcctggctacagcccaaca
tctccaagctacagcccatcttcgccaagctacaatccttcttcggtcaagtacacgcct
tcacatgcatactctccaagcagcccaaattactacagctcaacatcgccgacatactca
cctacctcaccatcatactcgcaaccaagcccgtcatacagcccaacaagtcgagtggaa
gaagaagcgcatgaggaggctgaagaggaagagccaaaaagatga

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