KEGG   Oryza sativa japonica (Japanese rice): 136351388
Entry
136351388         CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    136351388
  09124 Replication and repair
   03420 Nucleotide excision repair
    136351388
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    136351388
   03400 DNA repair and recombination proteins [BR:osa03400]
    136351388
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     136351388
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     136351388
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      136351388
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_3 RNA_pol_Rpb1_7 RNA_pol_Rpb1_4 DUF7069 Ntox47
Other DBs
NCBI-GeneID: 136351388
NCBI-ProteinID: XP_066159553
LinkDB
Position
8:complement(join(3273765..3276005,3276113..3276371,3276475..3276761,3276839..3277174,3277273..3277414,3277500..3277720,3277800..3277961,3278052..3278210,3278298..3278597,3279116..3279379,3280180..3280263))
AA seq 1484 aa
MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI
DQKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK
FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKKRGGCGAQQPNITV
DGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPIN
LIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMVKINETISKAKDDVKELIMQAHDKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIIVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQ
LGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVP
GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRIT
NDEAPKGEIQDESAEDDVFLKKIESNMSLLRILTEMALRGIPDINKVFIKYGKVNKFEDN
VGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVV
ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVY
AESDYLRGVTENIMLGRLAPIGTGGCALYPKQPSDIGGVPHKEG
NT seq 4455 nt   +upstreamnt  +downstreamnt
atggatgcgaggttcccgtactcgccggccgaggtggccaaggtgcagctggtgcagttc
ggcatcctcagccccgacgagatcaggcaaatgtcagtggtgcagatagagcatgcagaa
accatggaaagggggaagcccaagcctggtggcttgagtgaccctcggttggggactatt
gaccagaagatcaaatgtgagacatgcatggctgggatggcggagtgcccaggccacttt
ggccaccttgagcttgctaagccaatgttccatatcggcttcatcaagactgtactctcc
ataatgcgttgcgtctgcttcaattgttccaagatccttgcggatgaggatgataccaag
ttcaagcaggctcttaaaataaggaacccaaaaaatagactgaaaagaatatatgatgct
tgcaagagcaaaaaagtttgcgcggggggtgatgacctcgatgttcaggagcagcaagat
actgatgagccagtaaagaaaaggggtggctgtggtgctcagcagccaaatatcactgtt
gatggtatgaagatggttgcagagtttaaagcaccaaagaagaaaaacgatgatcaagag
caactccctgaaccagtggagcgaaagcaaatcctctcagctgagagggtgctcaatgtt
cttaaacgtataagtgatgaggactgtcttctattgggtctgaaccctaaatttgcccgc
cctgactggatgattttgcaagtccttccaattcccccaccccctgtgaggccatctgtc
atgatggatacctcttccagaagtgaggatgatttgactcatcaattagctatgataatt
cgacataatgagaacttgaggaggcaagagagaaatggggccccagctcacataataaca
gagtttgctcaattgttgcaatttcacattgcaacatactttgacaatgaacttcctggc
cagccaagggccacacagcgttctggaaggcctattaaatcaatttgcagcaggctgaaa
gcaaaggaaggccgcattagaggaaacttgatgggaaagcgtgttgatttctcagctcgt
actgtcatcacaccagatccgaatattaacattgatgaattgggagtgccatggagtatt
gctttgaacttgacatacccagaaactgtcactccatataacatcgagagattgaaagag
cttgttgaatatgggcctcaccctccccctggcaagacaggtgcaaagtatattatcagg
gaagacggtcagaggcttgatcttcgttatgtgaagaaaagtagtgatcagcatctggag
ctgggatacaaggtggaaaggcacctcaatgatggggattttgttctcttcaaccggcag
cccagtcttcacaaaatgtctatcatggggcatcgcattaaaatcatgccgtattcaact
tttcgcctaaacctgtccgttacttcaccatacaatgcagattttgatggggatgaaatg
aatatgcatgttccgcagtcatttgagaccagagctgaagttctagagttgatgatggtt
ccaaaatgtattgtgtctcctcagtcgaataggcctgttatgggtattgtccaggacacg
cttcttggctgtcgcaaaattactaaaagagatactcttattgaaaaggatgtgtttatg
aacatcttaatgtggtgggaagatttcgatggaaaggtccctgcccctgccattttgaaa
ccaaggcctatttggactgggaaacaagttttcaacttgattattcccaagccaatcaat
ttaattagattttcagcctggcattctgaagctgaaacaggatttattactcctggtgat
actatggtccggatagagaagggagagcttctatctggtacactttgcaaaaagacactt
gggacatcaactggaagtcttattcatgttatttgggaagaggttggtccagatgctgct
cgcaagttcttaggtcatacacagtggctagtcaactactggcttctgcaaaatggtttc
agtattggaattggggatacaattgcagatgctgccaccatggtgaagattaatgagaca
atctcaaaagctaaagatgatgtgaaggagcttattatgcaagctcatgataaacaattg
gaagctgagccaggacgcaccatgatggaatcattcgaaaatagagtaaatcaggttctt
aacaaggctcgtgatgatgctggaagtagtgcccagaagagtttgtctgaaagcaacaac
ctgaaggctatggttactgcaggctcaaaaggaagtttcatcaatatttctcaaatgact
gcttgtgtcggacagcagaatgttgagggcaagcggatcccatttggcttcattgatcga
acgttgccccacttcacaaaagatgattatggtcctgaaagtcgtgggtttgtggagaac
tcttaccttagaggtctgacaccacaagaatttttctttcatgctatgggtggtagagaa
ggtctgattgatactgctgtgaagacctctgagactggatatatccagcgacgacttgtg
aaggctatggaagatatcatagtgaaatatgatggtacggtaagaaattccttgggagac
gtcattcagttcttatatggagaagatggcatggatgctgtttggattgagtcacagaag
ttggattccttgaagatgaagaagggtgagtttgataatgtatttcgttatgaactggac
gatgagaactggaggccaaattacatgttaccagaacatgttgatgatttgaagaccatt
cgtgagtttagaaatgtgtttgaagcagaggttcagaagctagaagctgaccggttccag
cttggttctgagattgccacaactggtgataatacatggcctatgcctgtcaacctcaaa
cggcttatctggaatgcacagaagacattcaagattgatctcagaaggccttctgacatg
cacccaatggaaattgtggaggcaatagataagctgcaagaaagactgaaggttgttcct
ggtgatgatgctatgagtattgaggctcagaagaatgcaactttgttcttcaatatcctg
cttcgaagcacattcgctagcaagagggtcttgaaggagtacaggcttacaaaggaagct
tttgaatgggttattggtgagattgaatcgagattccttcagtctttggtggctcctggt
gaaatgattggatgcgtagctgcacagtccattggagaaccggcaactcagatgaccctg
aatacttttcattatgctggtgtcagtgccaagaatgtcactcttggagttcccaggctg
agagagatcattaatgttgctaagaagataaaaactccatcattgtcagtttacctaaag
cctgaggtgaacaagaagaaagaactggctaagaatgtccaatgtgccttagagtacact
actctgcgcagtgtgacacatgctacagagatatggtatgatcctgatccactgggaacc
attattgaagaagatgttgaatttgtccggtcctattatgaaatgcctgatgaggatatt
gacccagataaaatttcaccgtggctgctgcgtatcgagctgaatcgtgagatgatggtt
gataagaagttgagcatggctgatattgcagagaagatcaatcatgaatttgatgatgac
ttgtcatgcatatttaatgatgataatgcagataaactgatccttcgtgtccgcatcaca
aatgatgaagctccaaagggagaaatacaagatgagtctgctgaggatgatgtcttcctc
aagaagattgaaagtaacatgagtctgctgaggatattgacagagatggcacttcgtgga
attccagatattaacaaagtttttatcaaatatgggaaggtcaataaatttgaggacaat
gttggcttcaaagcagataatgagtggatgcttgatacggaaggtgttaatctcttggct
gtcatgtgccatgaagatgttgatgctactaggacaacaagtaaccatttgatcgaagta
attgaggttcttggaatcgaggctgttcgtcgagctctcttggatgagctgcgggtggtc
atatctttcgatggttcttatgtcaattacagacatctggccattctttgtgatacaatg
acatacagagggcatctgatggctattacaaggcatggtatcaaccgtaatgacacaggg
cctcttatgagatgttcctttgaagagacggtggatatcttgcttgatgctgctgtatat
gctgaatctgactacctgagaggtgtcactgagaacattatgcttggccggcttgctcct
atcggtacaggaggctgtgcattgtatccgaaacaaccttcggatataggaggagttccg
cataaggaaggatga

KEGG   Oryza sativa japonica (Japanese rice): 4337831
Entry
4337831           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4337831
  09124 Replication and repair
   03420 Nucleotide excision repair
    4337831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4337831
   03400 DNA repair and recombination proteins [BR:osa03400]
    4337831
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     4337831
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     4337831
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4337831
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R DUF7069 CCDC-167 PspA_IM30
Other DBs
NCBI-GeneID: 4337831
NCBI-ProteinID: XP_015638336
UniProt: Q0DKN9
LinkDB
Position
5:complement(join(2949257..2949311,2951102..2951173,2951281..2954441,2954543..2954801,2954888..2955174,2955251..2955586,2955690..2955831,2955905..2956125,2956207..2956368,2956445..2956603,2956688..2956987,2957662..2957925,2958730..2958816))
AA seq 1834 aa
MDAARFPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGT
IDRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDI
KFKQALKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNIT
VDGMKMVAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPKFA
RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII
TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII
REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQI
NLIRFSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQ
LEAEAGRTTMESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQM
TACVGQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQ
KLDSLKMKKAEFDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRF
QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVV
PGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHL
KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDED
IDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI
TNDEAQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFK
TEKGWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD
PLRGVSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISG
TPYHQGMMSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPP
VCTPGPGSFTSSSPYNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSP
SSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPTSPSYSPTS
PSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
SAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNYYSSTSPTYS
PTSPSYSQPSPSYSPTSRVEEEAHEEAEEEEPKR
NT seq 5505 nt   +upstreamnt  +downstreamnt
atggatgctgcgaggttcccgtactcgccggccgaggtggccaaggtggaggcggtgcag
ttcggcgtcctcagccccgacgagatcagacaaatgtcggtggtgcatatagagcatgca
gagactatggaaaaggggaagcccaagcctggtggcttgagtgaccctcggatggggaca
attgaccggaagatcaagtgtgagacatgcatggctgggatggcagagtgcccaggccac
tttggccaccttgagcttgctaagccaatgttccacatcggcttcatcaagactgtactc
tccataatgcgctgcgtctgcttcaattgctccaagatccttgcagatgaggatgatatc
aagttcaagcaggctcttaaaatcaggaatccaaaaaataaactaaaaagaatatatgat
gcttgcaagaacagaaagatctgtgcaggcggtgacaatcttgatgttcaggagcaacaa
ggtactgatgatccagtgaagaaaaggggtggctgtggtgctcagcagccgaatatcact
gttgacggtatgaagatggttgcagagtataaagcaccaaagaagaaaaacgatgaccaa
gagcaactccctgaacctgtggaccggaagcaaatcctctctgctgagagggtccttaat
gttcttaaacatataagtgacgaggactgtcttctattgggtctgaaccccaaatttgcc
cgtcctgattggatgattttgcaagtccttccgattcctccaccccctgtgagaccatct
gtaatgatggatacttcttccagaagtgaggatgatttgactcatcaattagcaatgata
attcgacacaatgagaacttgaggaggcaagagagaaatggagccccagctcacataata
acagagtttgctcagttattgcaattccacattgcaacatactttgacaatgaacttcct
ggccagccaagggccacacagcgatctggaaggcctattaaatcaatttgcagcagactg
aaagcaaaggaaggccgcattagaggaaacttgatggggaagcgtgttgatttctcagct
cgtactgtcatcacaccagacccgaatattaacattgatgaattgggagtgccatggagt
attgctttgaacctgacatacccagaaactgttactccatataacatcgagaggttgaaa
gaacttgtagaatatgggccccaccctccccctgggaagacaggtgcaaaatacattatc
agggaagacggtcagaggcttgatcttcgttatgtgaagaaaagtagtgatcagcatctg
gagctgggttacaaggtggaaaggcacctcaatgatggggattttgttcttttcaatcgg
caacccagtcttcacaaaatgtctatcatggggcatcgcattaaaatcatgccctattca
actttccgcttaaacttgtccgtcacttcgccgtacaatgcagattttgatggggatgaa
atgaatatgcatgttcctcagtcatttgagaccagagctgaagttctagagttgatgatg
gttccaaaatgtattgtgtctcctcaatcgaacaggcctgttatgggtattgtccaggac
acgcttcttgggtgtcgcaaaattactaaaagagatactcttattgaaaaggatgtattt
atgaacatcttaatgtggtgggaagattttgatggaaaggtccctgcccccgccattttg
aaaccaaggcctatttggactgggaaacaagttttcaacttaattattcccaagcaaatc
aatttgattagattttctggctggcattctgaagctgaaacaagatttattactcctggt
gatactatggtccggatagagaagggagagcttctatctggtacactttgcaaaaagaca
cttggaacatcaactggaagtcttattcatgttatttgggaagaggttggtccagatgct
gctcgcaagttcttaggtcatacacagtggctagtcaactactggcttctgcaaaatggt
ttcagtattggaattggggatacaattgcagatgcagccaccatggagaatattaatgag
acaatctcaaaagctaaaaatgatgtgaagaaacttattaagcaatttcgtgataaccaa
ttggaagctgaggcaggacgcaccacgatggaatcatttgaaaatagagtaaatgaggtt
cttaacaaggctcgtgatgttgctggaagtagtgccgagaagagtttgtctgaaagtaac
aatctgaaggctatggccaccgcaggctcaaaaggaactttcatcaatatttcacagatg
actgcttgtgtcggacagcagaatgttgagggcaagcggatcccatttggcttcaccaat
cgaacattgccccacttcacgaaaaatgactatggtcctgaaagtcgtgggtttgtggag
aactcttaccttcgaggcctgacaccacaagaatttttctttcatgctatgggtggtaga
gaaggtctgattgatactgctgtgaagacctcggaaactggatatatccagcgacgactt
gtgaaggctatggaagatatcatggtgaagtatgatggtactgttagaaattctttggga
gatgtcattcagttcttatatggagaagatggcatggatgctatttggattgagtcacag
aagttggactccttgaagatgaaaaaggctgagtttgataatgtatttcgttatgaactg
gatgatgagaactggaagccaaactacttgtcgactcaacatgctgaggatttgaagacc
atcagtgagattagaaatgtgtttgaggcagaggttcagaagctagaagctgaccggttc
cagcttggcactgagattgctacaactggtgataatacatggcctatgcctgtcaatctc
aagcggcttatctggaatgctcagaagacattcaagattgatctgagaaggccttctgac
atgcacccaatggaaattgtggatgcaatagataagctgcaagaaagacttaaggttgtc
cctggtgacgatgatatcagtattgaggctcagaagaatgcaactttgttcttcaatatc
ctgcttcgaagcacatttgctagcaagagggtcttgaaggagtacaggcttacaaaggaa
gcttttgaatgggttattggtgagattgaatcgagattccttcaatctttagtggctcca
ggtgaaatgatcggatgtgtagctgcacagtccatcggagaaccagcaactcagatgacc
ctgaatactttccattatgctggtgtcagtgccaagaacgttacccttggtgttcccagg
ctgagagaaatcattaatgttgctaagaatataaaaactccatcattgtcagttcaccta
aagcctgaggtgaacaagaagaaggaattggcgaagaatgtccaatgtgccttagagtac
actactctgcggagtgtgactcatgctactgagatatggtatgatcctgatcctctggga
accattattgaagaagatgctgaatttgtccagtcctactatgaaatgcctgatgaggac
attgaccctgataaaatttctccatggctgctgcgtattgagctgaatcgtgagatgatg
gttgataagaaattgagcatggctgatattgcagagaagatcaatcatgaattcgatgat
gacttgtcatgtatatttaatgatgataatgcagataaactgatccttcgtgtccggatc
acaaatgatgaagctcaaaagggagaaatacaggatgaatatggtgaggatgatgtcttc
ctcaagaagattgagagtaacatgttgacagagatggcccttcgtggaattccaggtatt
aacaaagtgtttatcaaagaggggaacgtcaataaatttgaggacaatgatggcttcaaa
acagagaaggggtggatgcttgatacagaaggtgttaatctcttggctgtcatgtgccat
gaagatgttgatgctactaggacaacaagtaaccatttgattgaagtaattgaggttctt
ggaatcgaggctgtccgccgagctctcttggatgagctgagggttgtcatatcttttgat
ggatcttatgtcaactacaggcatctggccgttctttgtgatacaatgacatacagggga
catctgatggctattacaaggcatggtatcaaccgtaatgacacagggcctcttatgaga
tgttcttttgaagagactgtggacatcttgcttgatgctgctgtatatgctgaatctgac
cccctgagaggtgtcagcgagaacattatgcttggccagcttgctcctataggtacagga
ggctgtgatctgtatctgaacgatcagatgctgaagcaggccatcgagcttcaactccca
agctatgttgaaggcctggactttggcatgatgacatcagcatgctcgcccatctctggg
acaccatatcatcaagggatgatgtcgccaagttacctgctgagtccagacatcagggct
tcccccactgcagcagatgctcagttctcgccgtatgttggaggaatggctttctcaccc
gtatcttcaccaggcaactacactccttcgtcagggggtggttacagtccatctcctccc
gtatgtactccagggccaggaagcttcacctcttcatcaccatataatcctgtctctcct
ttttactcgcctgccagtccattatcatgcccacttaccagtccgtcatatgtgcctacc
agtctaccacactcaccaacatctccaatatacagcgctacatctcctatctacagccct
tcatctcctatctacagccctacatcactaagttacagtcccacatcaccagtttatagt
ccgacttctcctgtatataacccaacttcttctgcatacagccccacatcaccatcttat
aaccctacatcgccgtcttacagttacagccccacatcaccatcttatagccccacatcg
ccgtcttacagttacagccccacatcaccatcttatagccccacatcgccgtcttacaat
tacagccccacatcaccgtcatatagcccaacatcgccgtcttacagccccacatcacca
tcatacagcccaacatcgccgtcttacagtccgacgtcaccctcatatagtccgacatcg
tctgcatacagccctacttcgcctgcatacagcccaacatctcctggctacagcccaaca
tctccaagctacagcccatcttcgccaagctacaatccttcttcggtcaagtacacgcct
tcacatgcatactctccaagcagcccaaattactacagctcaacatcgccgacatactca
cctacctcaccatcatactcgcaaccaagcccgtcatacagcccaacaagtcgagtggaa
gaagaagcgcatgaggaggctgaagaggaagagccaaaaagatga

KEGG   Oryza sativa japonica (Japanese rice): 9267835
Entry
9267835           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    9267835
  09124 Replication and repair
   03420 Nucleotide excision repair
    9267835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    9267835
   03400 DNA repair and recombination proteins [BR:osa03400]
    9267835
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     9267835
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     9267835
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      9267835
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R DUF7069 Ntox47 TACC_C
Other DBs
NCBI-GeneID: 9267835
NCBI-ProteinID: XP_015649819
LinkDB
Position
8:complement(join(3238711..3238816,3239284..3239343,3240300..3240371,3240482..3243597,3243705..3243963,3244067..3244353,3244431..3244766,3244865..3245006,3245765..3245985,3246064..3246225,3246318..3246476,3246564..3246863,3247382..3247645,3248448..3248531))
AA seq 1855 aa
MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI
DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK
FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKKRGGCGAQQPNITV
DGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPIN
LIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMVKINETISKAKDDVKELIKQNQDKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKGEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQ
LGSEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVP
GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRIT
NDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNVGFKA
DNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY
LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTP
YHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAFSPVPSPGYTPSSGGGYSPSSPVYSP
GPGYSPTSPSYSPASPSYSPTSPSYTPGSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYS
PTSPSYNPSSAKYSPSHAYSPSSPRLSPYSQTSPNYSPTSPTYSPTSPSYSQPSPSYSPT
SPYTTSGGPSPDYSPTSPNYSPSGSYSPTAPGYSPSSTGQQFSPQAADKDKEKAK
NT seq 5568 nt   +upstreamnt  +downstreamnt
atggacgcgaggttcccgtactcgccggccgaggtggccaaggtgcagctcgtgcagttc
ggcatcctcagccccgacgagatcaggcaaatgtcagtggtgcagatagagcatgcagaa
accatggaaagggggaagcccaagcctggtggcttgagtgaccctcggttggggactatt
gaccggaagatcaaatgtgagacatgcatggctgggatggcggagtgcccaggccacttt
ggccaccttgagcttgctaagccaatgttccatatcggcttcatcaagactgtactctcc
ataatgcgttgcgtttgcttcaattgttccaagatccttgcggatgaggatgatactaag
ttcaagcaggctcttaaaataaggaacccaaaaaatagactgaaaagaatatatgatgct
tgcaagagcaaaaaagtttgcgcagggggtgatgaccttgatgttcaggagcaacaagat
actgatgagccagtaaagaaaagaggtggctgtggtgctcagcagccaaatatcactgtt
gatggtatgaagatggttgcagagtttaaagcaccaaagaagaaaaacgatgatcaagag
caactccctgaaccagtggagcgaaagcaaatcctctcagctgagagggtgctcaatgtt
cttaaacgtataagtgatgaagactgtcttctattgggtctgaaccctaaatttgcccgc
cctgactggatgattttgcaagtccttccaattcccccaccccctgtgaggccatctgtc
atgatggatacctcttccagaagtgaggatgatttgactcatcaattagctatgataatt
cgacataatgagaacttgaggaggcaggagagaaatggggccccagctcacataataaca
gagtttgctcaattgttgcaatttcacattgcaacatacttcgacaatgaacttcctggc
cagccaagggccacacagcgttctggaaggcctattaaatcaatttgcagcaggctgaaa
gcaaaggaaggccgcattagaggaaacttgatgggaaagcgtgttgatttctcagctcgt
actgtcatcacaccagatccgaatattaacattgatgaattgggagtgccatggagtatt
gctttgaacttgacatacccagaaactgtcactccatataacatcgagagattgaaagag
cttgttgaatatgggcctcaccctccccctggcaagacaggtgcaaagtatattatcagg
gaagacggtcagaggcttgatcttcgttatgtgaagaaaagtagtgatcagcatctggag
ctgggatacaaggtggaaaggcacctcaatgatggagattttgttctcttcaaccggcag
cccagtcttcacaaaatgtctatcatggggcatcgcattaaaatcatgccgtattcaact
tttcgcctaaacctgtccgttacttcaccatacaatgcagattttgatggggatgaaatg
aatatgcatgttccacagtcatttgagaccagagctgaagttctagagttgatgatggtt
ccaaaatgtattgtgtctcctcagtcgaataggcctgttatgggtattgtccaggacacg
cttcttggctgtcgcaaaattactaaaagagatactcttattgaaaaggatgtgtttatg
aacatcttaatgtggtgggaagatttcgatggaaaggtccctgcccctgccattttgaaa
ccaaggcctatttggactgggaaacaagttttcaacttgattattcccaagccaatcaat
ttaattagattttcagcctggcattctgaagctgaaacaggatttattactcctggtgat
actatggtccggatagagaagggagagcttctatctggtacactttgcaaaaagacactt
gggacatcaactggaagtcttattcatgttatttgggaagaggttggtccagatgctgct
cgcaagttcttaggtcatacacagtggctagtcaactactggcttctgcaaaatggtttc
agtattggaattggggatacaattgcagatgctgccaccatggtgaagattaatgagaca
atctcaaaagctaaagatgatgtgaaggagcttattaagcaaaatcaggataaacaattg
gaagctgagccaggacgcaccatgatggaatcattcgaaaatagagtaaatcaggttctt
aacaaggctcgtgatgatgctggaagtagtgcccagaagagtttgtctgaaagcaacaac
ctgaaggctatggttactgcaggctcaaaaggaagtttcatcaatatttctcaaatgact
gcttgtgtcggacagcagaatgttgagggcaagcggatcccatttggcttcatcgatcga
acgttgccccacttcacaaaagatgattatggtcctgaaagtcgtgggtttgtggagaac
tcttaccttagaggtctgacaccacaagaatttttctttcatgctatgggtggtagagaa
ggtctgattgatactgctgtgaagacctctgagactggatatatccagcgacgacttgtg
aaggctatggaagatatcatggtgaaatatgatggtacggtaagaaattccttgggagac
gtcattcagttcttatatggagaagatggcatggatgctgtttggattgagtcacagaag
ttggattccttgaagatgaagaagggtgagtttgataatgtatttcgttatgaactggac
gatgagaactggaggccaaattacatgttaccagaacatgttgatgatttgaagaccatt
cgtgagtttagaaatgtgtttgaagcagaggttcagaagctagaagctgaccggttccag
cttggctctgagattgccacaactggtgataatacatggcctatgcctgtcaacctcaaa
cggcttatctggaatgcacagaagacattcaagattgatctcagaaggccttctgacatg
cacccaatggaaattgtggaggcaatagataagctgcaagaaagactgaaggttgttcct
ggtgatgatgctatgagtattgaggctcagaagaatgcaactttgttcttcaatatcctg
cttcgaagcacattcgctagcaagagggtcttgaaggagtacaggcttacaaaggaagct
tttgaatgggttattggtgagattgaatcgagattccttcagtctttggtggctcctggt
gaaatgattggatgcgtagctgcacagtccattggagaaccggcaactcagatgaccctg
aatacttttcattatgctggtgtcagtgccaagaatgtcactcttggagttcccaggctg
agagagatcattaatgttgctaagaagataaaaactccatcattgtcagtttacctaaag
cctgaggtgaacaagaagaaagaactggctaagaatgtccaatgtgccttagagtacact
actctgcgcagtgtgacacatgctacagagatatggtatgatcctgatccactgggaacc
attattgaagaagatgttgaatttgtccggtcctattatgaaatgcctgatgaggatatt
gacccggataaaatttcaccgtggctgctgcgtatcgagctgaatcgtgagatgatggtt
gataagaagttgagcatggctgatattgcagagaagatcaatcatgaatttgatgatgac
ttgtcatgcatatttaatgatgataatgcggataaactgatccttcgtgtccgcatcaca
aatgatgaagctccaaagggagaaatacaggatgagtctgctgaggatgatgtcttcctc
aagaagattgaaagtaacatgttgacagagatggcacttcgtggaattccagatattaac
aaagtttttatcaaatatgggaaggtcaataaatttgaggacaatgttggcttcaaagca
gataatgagtggatgcttgatacagaaggtgttaatctcttggctgtcatgtgccatgaa
gatgttgatgctactaggacaacaagtaaccatttgatcgaagtaattgaggttcttgga
atcgaggctgttcgtcgagctctcttggatgagctgcgggtggtcatatctttcgatggt
tcttatgtcaattacagacatctggccattctttgtgatacaatgacatacagagggcat
ctgatggctattacaaggcatggtatcaaccgtaatgacacagggcctcttatgagatgt
tcctttgaagagacggtggatatcttgcttgatgctgctgtatatgctgaatctgactac
ctgagaggtgtcactgagaacattatgcttggccagcttgcacctatcggtacaggaggc
tgtgcattgtatctcaatgatcagatgctgcagcaggccatcgaacttcaactcccaagc
tatgttgaaggcctggactttggcatgacaccagcacgctcgcccatctctgggacacca
tatcatgaaggaatgatgtcaccgagctacctgctaagtccaaacatcagggcttccccc
attacagatgctcagttctcgccatatgttggaggaatggctttctcaccagtaccttca
ccaggctacactccatcgtcagggggtggttacagtccatcttctccggtatacagtcca
gggccaggatacagcccaacttctccatcatatagtcctgcttcacccagctacagtccc
acttctccatcatatacacctggctctcctacttactctccaacaagtccatcatactcg
cctaccagtccatcatactcgccaacatctccaagctacagccctacatcacctagctat
agccctacatctccaagttacagcccgacctcgccaagttatagtcccacttctccgagc
tacagtccgacatcaccagtttatagtccgacttctcctgcatatagtccaacttctcct
gcatacagccccacatcaccatcttatagccccacatcaccatcttacagccccacatca
ccatcatatagcccaacatctccatcatacagtccaacatctccgtcttacagccccact
tccccctcatacagtccgacatcaccctcgtacagtccgacatctcctgcatacagccct
acatcacctggttacagcccgacatctccaagctacagcccaacttcaccaaattacagt
ccaacttcaccaagctacaatccttcttcggccaagtacagtccttcccacgcgtactct
ccaagcagcccaaggctgagcccttatagtcagacttcaccaaattacagcccaacatcg
ccgacatactcacctacctcaccatcatattcacaaccaagtccgtcatacagcccaaca
agcccatacaccacatctggagggcccagcccagattatagcccaacatctccgaattac
agccctagcggaagctactcccccactgcaccgggctactcaccatcctccaccggccag
cagttctctccccaagctgccgacaaggacaaggagaaggcaaaatga

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