KEGG   Oryza sativa japonica (Japanese rice): 136357350
Entry
136357350         CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 12-like
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    136357350
  09124 Replication and repair
   03420 Nucleotide excision repair
    136357350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    136357350
   03400 DNA repair and recombination proteins [BR:osa03400]
    136357350
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     136357350
  RNA polymerase III system
   RNA polymerase III
     136357350
  RNA polymerase I system
   RNA polymerase I
     136357350
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      136357350
SSDB
Motif
Pfam: Zn_ribbon_RPAB4 A2L_zn_ribbon DUF5816 DUF7129 Prok-RING_1 Zn_ribbon_8 zf-Mss51 zf_Tbcl_Rhp7
Other DBs
NCBI-GeneID: 136357350
NCBI-ProteinID: XP_066168666
LinkDB
Position
7:complement(join(300533..300555,301524..301616,302077..302149))
AA seq 62 aa
MQHDPSSPAPMDPQQPKPVSYLCTDCGTETLLKPTDVVQCHECGCRILCKKRTRQVVQYE
AR
NT seq 189 nt   +upstreamnt  +downstreamnt
atgcagcacgaccctagctcaccggcaccaatggatcctcagcagccgaaacccgtcagc
tatctatgcacagattgtggaactgagaccttactcaaaccgactgatgttgtccagtgc
catgaatgtggctgtcgcatcctctgcaagaagcgaacccgccaagttgttcagtatgaa
gcgcgctga

KEGG   Oryza sativa japonica (Japanese rice): 9269422
Entry
9269422           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 12
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    9269422
  09124 Replication and repair
   03420 Nucleotide excision repair
    9269422
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    9269422
   03400 DNA repair and recombination proteins [BR:osa03400]
    9269422
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     9269422
  RNA polymerase III system
   RNA polymerase III
     9269422
  RNA polymerase I system
   RNA polymerase I
     9269422
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      9269422
SSDB
Motif
Pfam: Zn_ribbon_RPAB4 Zn_Ribbon_YjdM DUF7577 Zn_ribbon_13 DUF5816 DUF7129 HypA Prok-RING_1 Cas12f1-like_TNB
Other DBs
NCBI-GeneID: 9269422
NCBI-ProteinID: XP_015626385
UniProt: C7J2V2 C7IWZ4
LinkDB
Position
1:join(19653700..19653742,19654169..19654261,19655740..19655762)
AA seq 52 aa
MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
NT seq 159 nt   +upstreamnt  +downstreamnt
atggatccgcaacaacctgagcccgtcagctatctctgtggagattgcggagctgagaac
acactgaagccaggagatgtgatccagtgccgtgaatgtggctatcgcatcctctacaag
aagcgtacccgccggattgttcaatatgaagcacgctga

KEGG   Oryza sativa japonica (Japanese rice): 9272152
Entry
9272152           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 12
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    9272152
  09124 Replication and repair
   03420 Nucleotide excision repair
    9272152
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    9272152
   03400 DNA repair and recombination proteins [BR:osa03400]
    9272152
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     9272152
  RNA polymerase III system
   RNA polymerase III
     9272152
  RNA polymerase I system
   RNA polymerase I
     9272152
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      9272152
SSDB
Motif
Pfam: Zn_ribbon_RPAB4 Zn_Ribbon_YjdM DUF7577 Zn_ribbon_13 DUF5816 DUF7129 HypA Prok-RING_1 Cas12f1-like_TNB
Other DBs
NCBI-GeneID: 9272152
NCBI-ProteinID: XP_015638231
UniProt: C7J2V2 C7IWZ4
LinkDB
Position
5:join(3005465..3005507,3005749..3005841,3007315..3007337)
AA seq 52 aa
MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
NT seq 159 nt   +upstreamnt  +downstreamnt
atggatccgcaacaacctgagcccgtcagctatctctgtggagattgtggagctgagaac
acactgaagccaggagatgtgatccagtgccgtgaatgtggctatcgcatcctctacaag
aagcgcacccgccggattgttcaatatgaagcgcgctga

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