Oryza sativa japonica (Japanese rice) (RefSeq): 3131432
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Entry
3131432 CDS
T01015
Symbol
rpoB, OrsajCp015
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
3131432 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
3131432 (rpoB)
03400 DNA repair and recombination proteins [BR:
osa03400
]
3131432 (rpoB)
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
3131432 (rpoB)
Transcription machinery [BR:
osa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
3131432 (rpoB)
DNA repair and recombination proteins [BR:
osa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
3131432 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
3131432
NCBI-ProteinID:
NP_039373
UniProt:
P0C503
A0A0K0LQV7
LinkDB
All DBs
Position
Pltd:19214..22441
Genome browser
AA seq
1075 aa
AA seq
DB search
MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHEISFQLFAKGYQLL
EPSIKERDAVYESLTYSSELYVSARLIFGFDVQKQTISIGNIPIMNSLGTFIINGIYRIV
INQILLSPGIYYRSELDHKGISIYTGTIISDWGGRSELAIDKKERIWARVSRKQKISILV
LSSAMGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFSES
LCEELQKKFFQQKCELGRIGRRNMNRRLNLDIPQNSTFLLPRDVLAATDHLIGMKFETGI
LDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTS
TSILLITTYETFFGTYPLSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPS
HYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEKAKKKKERQVVYLSPN
RDEYYMIAAGNSLSLNRGIQEEQVVPARYRQEFLTIAWEQIHVRSIFPFQYFSIGGSLIP
FIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVSVIAEREGKIISTNS
HKILLSSSGKTISIPLVTHRRSNKNTCMHQKPRVPRGKSIKKGQILAEGAATVGGELALG
KNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKITKEIPH
LEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSK
ETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILP
RQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEA
SRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVD
EKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEILTYKSDHLIA
RQEILNATIWGKRVPNHEDPPESFRVLVRELRSLALELNHFLVSQKNFQVNREEV
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgctccggaatggaaatgagggaatgtccacaatacccggatttagtcagatccaattc
gagggattttgtaggttcattaatcaaggcttggcagaagaacttgagaagtttccaaca
attaaagatccagatcacgaaatttcatttcaattatttgcgaaaggatatcaattgcta
gaaccttcgataaaagaaagggatgctgtgtatgaatcactcacctattcttccgaatta
tacgtatccgcgcgattaatttttggtttcgatgtgcaaaagcaaaccatttctattgga
aacattcctataatgaattccttaggaacctttataataaatggaatataccgaattgtg
atcaatcaaatattgctaagtcctggtatttactaccgctcggaattagaccataaagga
atttctatctacaccgggactataatatcagattggggaggaagatcggaattagcaatt
gataaaaaagaaaggatatgggctcgcgtgagtagaaaacaaaagatatctattctagtt
ctatcatcagctatgggttcaaatctaaaagaaattctagataatgtttcctaccctgaa
attttcttgtctttccctaatgctaaggagaagaagaggattgagtcaaaagaaaaagct
attttggagttttatcaacaatttgcttgtgtaggtggggacctggtattttcggaatcc
ttatgtgaggaattacaaaagaaattttttcaacaaaaatgtgaattaggaaggattggt
cgacgaaatatgaatcgaagactgaatcttgatatacctcagaacagcaccttcttgtta
ccgcgagatgtattggccgctacggatcatttgattggaatgaaatttgaaacgggtata
cttgacgatgacgatatgaatcacttgaaaaataaacgtattcgttcggttgcggatctg
ttacaagatcaattcggactggctcttggtcgtttacaacatgcggttcaaaaaactatc
cgtagagtattcatacgtcaatcaaaaccgactccacaaactttggtaactccaacttca
acctcgattttattaataactacttacgagaccttctttggtacatatcccttatctcaa
gtttttgatcaaaccaatccattgacacaaacggttcatgggcgaaaagtgagttgtttg
ggtcctggaggattgacggggagaactgcaagttttcggagccgagatatccatccgagt
cactatgggcgtatttgtccaattgacacgtccgaaggaatcaacgttggacttactgga
tctttagctattcatgcgagaattgatcattggtggggatccgtagagagtcctttttat
gaaatatctgagaaagcaaagaaaaaaaaagagagacaggtggtttatttatcaccaaat
agagatgagtattatatgatagcagcaggaaattctttgtccttgaatcggggtattcag
gaagaacaggttgttccagctagataccgtcaagaattcctgactattgcatgggaacag
attcatgttagaagtatttttcctttccaatatttttctattgggggttctctcattcct
tttattgagcataatgatgcgaatcgagctttaatgagttctaatatgcagcgccaagca
gttccgctttctcggtccgagaagtgcattgttggaactggattggaacgccaaacagct
ctagattcgagggtttctgttatagccgaacgcgagggaaagatcatttctactaatagt
cacaagatccttttatcaagtagtgggaagactataagtattcctttagttacccatcgg
cgctctaacaaaaatacttgtatgcaccaaaaacctcgggttccgcggggtaaatccatt
aaaaaaggacaaattttagcggagggggctgctacggttggtggggaacttgctttagga
aaaaacgtattagtagcttatatgccatgggaaggttacaattttgaagacgcagtatta
attagcgaacgtttggtatatgaggatatttatacttcttttcacatccgaaaatatgaa
attcagacggatacaacaagccaaggctccgctgaaaaaatcactaaagaaataccacat
ctagaagaacatttactccgcaatttggacagaaatggagttgtgaagttggggtcctgg
gtagaaacaggcgatattttagtaggtaaattaacgcctcagatagcgagcgaatcgtcc
tatatcgcggaagctggattattacgggccatatttggtcttgaggtatccacttcaaaa
gaaacttctctcaaactaccgataggtggaagaggacgcgttatcgatgtgaaatggatc
cagagggatcccctcgacataatggttcgtgtatatattttacaaaaacgcgaaatcaaa
gttggggataaagtagccggaagacacgggaataaggggatcatttccaaaattttgcct
aggcaagatatgccctatttgcaagatggaacgcctgttgatatggttttcaatccctta
ggagtaccctcccgaatgaatgtgggacaaatatttgaaagctcgctcggattagcaggg
gatctgctaaagaaacattatagaatagcaccctttgatgagagatatgagcaagaggct
tcaagaaaacttgtgttttcagaattatatgaagccagtaaacaaacaaaaaatccgtgg
gtatttgaacccgagtacccgggaaaaagcagaatatttgatggaagaacaggagacccc
ttcgaacagcctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgat
gagaaaatccacggacgctctactgggccctattcacttgttacacaacaacccgttaga
ggaagagccaagcaagggggacaacgaataggagaaatggaagtttgggctttagaagga
tttggtgttgctcatattttacaagagatacttacttataaatctgatcatcttatagct
cgccaagaaatacttaacgctacgatctggggaaaacgagtacctaatcacgaggatcct
ccagaatcttttcgagtgcttgttcgagaactacgatctttggctctagaactgaaccat
ttccttgtatctcagaagaacttccaggttaatagggaagaagtttga
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integrated database retrieval system
