Oryza sativa japonica (Japanese rice): 3131433 Help Entry 3131433           CDS       T01015                                  Symbol rpoC1, OrsajCp016 Name (RefSeq) RNA polymerase beta' subunit   KO K03046   DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Organism osa  Oryza sativa japonica (Japanese rice) Pathway osa03020   RNA polymerase Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     3131433 (rpoC1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:osa03021]     3131433 (rpoC1)    03400 DNA repair and recombination proteins [BR:osa03400]     3131433 (rpoC1) Enzymes [BR:osa01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      3131433 (rpoC1) Transcription machinery [BR:osa03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      3131433 (rpoC1) DNA repair and recombination proteins [BR:osa03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       3131433 (rpoC1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 Motif Other DBs NCBI-GeneID:  3131433 NCBI-ProteinID:  NP_039374 UniProt:  P0C506 A0A0K0LR88 LinkDB All DBs Position Pltd:22479..24527 Genome browser AA seq 682 aa AA seqDB search MIDQYKHQQLQIGLVSPQQIKAWANKTLPNGEVVGEVTRPSTFHYKTDKPEKDGLFCERI FGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK GLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLFEDEISSCNHSISPFFS TPGFTTFRNREIATGAGAIREQLADLDLRIILENSSVEWKELEDEGYSGDEWEDRKRRIR KVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKRVI RRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLSDVI EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLITKRAT SNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHP LVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLY VLTIGNRRGICANRYNSCGNYPNQKVNYNNNNPKYTKDKESLFSSSYDALGAYRQKQICL DSPLWLRWKLDQRVIGLREVPIEVQYESLGTYREIYAHYLVVGNRKKEIRSIYIRTTLGH ISFYREIEEAIQGFSQAYSYTI NT seq 2049 nt NT seq  +upstreamnt  +downstreamnt atgattgaccaatataaacatcaacaacttcaaattggactcgtttcccctcaacaaata aaggcttgggctaacaaaacactacctaatggggaagtcgttggcgaagtcacaaggccc tccacttttcattataaaaccgataaaccagaaaaagatggattgttttgcgaaagaatc tttggacccataaaaagcagaatttgtgcttgtggaaattctcgagcgagcggagctgaa aacgaagacgaaagattttgccaaaaatgcggagtagaatttgttgattctcggatacga agatatcaaatgggatacatcaaactcgcatgtcccgtgactcatgtgtggtatttaaaa ggtcttcctagttatatcgcgaatcttttagataaaccccttaagaaattggagggccta gtatatggcgatttctcttttgctaggcccagtgctaaaaaaccaactttcttacgatta cgaggtttattcgaggatgaaatttcatcctgtaaccatagcatttccccctttttttct accccaggctttacaacatttcgaaatcgggaaattgcgacaggagcaggtgctattaga gaacaattagcagatttggatttgcgaattattttagagaattcctcggtcgaatggaag gaattagaagacgaggggtatagtggagatgaatgggaagatagaaaaagacgaataaga aaagtttttttgattagacgcatgcaattggcgaaacattttattcaaacaaatgtagaa ccagaatggatggttttgtgcttattaccagttcttcctcccgaattaagacccattgtt tataggtctggggataaagtagtgacttcggatattaatgaactttataagagagttatc cgtcggaacaacaatcttgcctatctattaaaaagaagtgaattagcgccagcagattta gtaatgtgccaggaaaaattggtacaagaagccgtggatacacttcttgatagtgggtcc cgcgggcaaccaacgagggatggtcacaataaagtatacaaatcactttcagatgtaatt gaaggtaaagaggggaggtttcgcgaaactctgcttgggaaacgggtcgattactcgggg cgttctgtcattgttgtgggtccttcactttcattacatcaatgtgggttacctctagag atagcaataaagctttttcagctatttgtaattcgcgatttaatcacgaaacgtgctact tctaatgttaggattgctaaaaggaaaatttgggaaaaggaacccattgtatgggaaata cttcaagaagttatgaggggacatcctgtactgttgaatagagcacctaccctgcataga ttaggcatacaggctttccaacccactttagtagaggggcgtactatttgtttacaccca ttagtgtgtaaaggtttcaatgcagactttgatggggatcaaatggctgttcatctacct ttatccttggaagctcaggcggaagctcgtttacttatgttttctcatatgaatctccta tctcccgctattggggatcctatttgcgtaccaacccaagacatgcttatcggactttat gtattaacgattggaaaccgtcgaggtatttgtgcaaatagatataatagttgcggaaac tatccaaaccaaaaagtaaattacaataataataatcctaagtatacgaaagataaagaa tctcttttttctagttcctatgatgcactgggagcttatagacagaaacaaatctgttta gacagtcccttgtggctccgatggaaactagatcaacgcgtcattgggttaagagaagtt ccgattgaagttcaatatgaatctttggggacttatcgtgagatttatgcccactatcta gtagtgggaaatagaaaaaaggaaatccgttctatatacattcgcaccactcttggtcat atttctttttatagagaaatagaggaagccatacaaggatttagtcaggcctattcatac actatctaa

Oryza sativa japonica (Japanese rice): 3131434 Help Entry 3131434           CDS       T01015                                  Symbol rpoC2, OrsajCp017 Name (RefSeq) RNA polymerase beta'' subunit   KO K03046   DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Organism osa  Oryza sativa japonica (Japanese rice) Pathway osa03020   RNA polymerase Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     3131434 (rpoC2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:osa03021]     3131434 (rpoC2)    03400 DNA repair and recombination proteins [BR:osa03400]     3131434 (rpoC2) Enzymes [BR:osa01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      3131434 (rpoC2) Transcription machinery [BR:osa03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      3131434 (rpoC2) DNA repair and recombination proteins [BR:osa03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       3131434 (rpoC2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_3 Peptidase_M23 ATG16 Motif Other DBs NCBI-GeneID:  3131434 NCBI-ProteinID:  NP_039375 UniProt:  P0C509 LinkDB All DBs Position Pltd:24727..29268 Genome browser AA seq 1513 aa AA seqDB search MAERANLVFQNKEIDGTAMKRLISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIE DLLTIPSKGWLVQDAEQQSFLLEKHYYYGAVHAVEKLRQSVEIWYATSEYLKHEMNSNFR ITDPSNPVYLMSFSGARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEYII SCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQAISVSPQNGMTEKLFV QTLIGRVLANDIYIGSRCIATRNQDIGIGLVNRFITTFRAQPFRAQPIYIRTPFTCRSTS WICQLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLVRSP SNGKIQFNGDLVHPTRTRHGQPAFLCYIDLHITIQSQDILHSVTIPSKSLILVQNDQYVE SEQVIAEIRAGTSALHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHLW ILSVSMCRSSIASFSLHKDQDQMNTYSFSVDGRYIFGLSMADDEVRHRLLDTFGKKDREI LDYSTPDRIMSNGHWNFVYPSILQNNFDLLAKKRRNRFAIPLQYHQEQEKEPISCFGISI EIPFMGVLRRNTIVAYFDDPRYKKDKKGSGIVKFRYRTLEDEYRTREKDSENEYGSPENE YRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILEDEYRTREEESEDE YGSPENKYRPREDKYGTLEEDSEDEHGTLEEDSEEDSEDEYGNPEEDSVLKKGVLIEHRG TKEFSLKYQKEVDRFFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVK RKKSHTELKIFSGDIHFPEEADKILGGSLIPLEREKKDSKESKKRENWVYVQWKKILKSK EKYFVLVRPAVAYEMNEGRNLATLFPQDLFEEEGNLQLRLVNFISHENSKLTQRIYHTNS QFVRTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIKSTISYTRKRYDSRSAGLI LHNRLDRTNTNSFYSKAKIQSLSQHQEAIGTLLNRNKEYQSLMVLSASNCSRIGFFKNSK NPNGVKESNPRIPIPKFWGLFRNFSGLLGTIAPSISNFSSSYYLLTYNQILLKKHLLLDN LKQNFKVLQGLKHSLINENQRTSNFDSNIMLDPFQLNWHFLPHDSWEETSAKIHLGQFIC ENVCLFKSHIKKSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYE KARSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGGPWGFLIGAELTIA QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAE RAGRALDESIYYRAILLGITRVSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN VVLGGIIPVGTGFQKFVHRYPQNKNLYFEIQKKKLFASEMRDILFLHTELVSSDSDVTNN FYETSESPFTPFI NT seq 4542 nt NT seq  +upstreamnt  +downstreamnt atggcggaacgggccaatctggtctttcagaataaagagatagatggaactgctatgaaa cgacttattagcagattaatagatcatttcggaatgggatatacatcccatatactggat caaataaaaacgctgggcttccatcaagccactactacatcgatttcattaggaatcgag gatcttttaacaataccctctaagggatggttagtccaagatgcggaacaacagagtttt cttttggaaaaacactattattatggggctgtacacgcggtagaaaaattacgccaatcc gttgaaatctggtatgctacaagtgaatatttgaaacacgaaatgaattcgaattttcgg ataacagatccttctaatccagtctatctaatgtctttttcaggagctagaggaaatgca tcgcaggtacaccaattagtaggtatgcgaggattaatggcggatcctcaaggacaaatg attgatttacctattcaaagcaatttacgcgagggactttctttgacagaatatataatt tcctgctacggagcccgcaaaggggttgtagatactgctgtacgaacggcggatgctgga tatcttacacgtagacttgttgaagtagttcaacatattattgtgcgtagaagagattgt ggtactatccaagctatttctgtgagtcctcaaaatgggatgacggaaaaactttttgta caaacattaattggtcgtgtattagcaaacgatatatatatcggttcacggtgcattgcc actcgaaatcaagatattggaattgggttagtcaatcgattcataaccacctttcgagca cagccatttcgagcacaaccaatatatattagaaccccctttacttgccggagcacatct tggatctgtcaattatgttatggtcggagttccactcatggcgatctggtcgaattgggg gaagctgtaggtgttattgcgggtcaatctattggggagccagggactcaactaacatta agaacttttcatactggtggggtattcacagggggtactgccgaccttgtacgatcccct tcaaatggaaaaatccaattcaatggggatttggttcaccccacacgtacccgtcatggg cagcctgcttttctatgttatatagacttgcatataactattcagagtcaggatattcta catagtgtgactattccttcaaaaagcttgattctagtgcaaaatgatcaatatgtagaa tccgaacaagtaattgcggagattcgtgccggaacgtccgctttgcattttaaagaaaag gtacaaaaacatatttattccgaatcagatggggaaatgcactggagtaccgatgtttat catgcgcccgaatatcaatatggtaatcttcgtcgattaccaaaaacaagccatttatgg atattgtcagtaagtatgtgcagatctagtatagcttctttttcgctccacaaggatcaa gatcaaatgaatacttattccttttctgttgacggaaggtatatctttggcctctcgatg gctgatgatgaggtaagacatagactgttggatacttttggtaaaaaagatagggaaatt cttgattattcaacgccggatcgaatcatgtccaatggtcattggaattttgtctatcct tctattcttcaaaataattttgatttgttagcgaaaaagcgaagaaataggttcgccatt ccattacagtatcatcaagaacaagagaaagaaccaatatcctgttttgggatttcgatt gaaataccctttatgggtgttttacgtagaaatactatagttgcttattttgacgaccca cgatacaaaaaagataaaaagggttcaggaattgttaaatttagatataggaccctagag gacgaatataggactcgagagaaagactcagagaacgaatacgggagcccagaaaacgaa tataggacccgagaggaagaatgtaaaaccctagaagacgaatataggactcgagaggag gagtatgaaaccctagaagatgaatatgggatcccagagaacgaatatgaaaccctagaa gatgaatatggaatcctagaggacgaatataggactcgagaggaggaatccgaggacgaa tatgggagtccagagaacaaatataggccccgagaggataaatatggcactttagaggaa gactcagaggacgaacatgggactttagaggaagactcagaggaagactcagaggacgaa tatgggaacccggaggaagattccgtcttaaaaaagggggttttgattgagcatcgagga acaaaagaatttagtctaaaataccaaaaagaagtagatcggttttttttcattctccaa gaactgcatatcttgccgagatcctcatccctaaaggtacttgacaatagtattattgga gtggatacacaactcacaaaaaatacaagaagtcggctgggtggattggttcgagtgaag agaaaaaaaagccatacggaactaaaaatcttttctggagatattcattttcctgaagag gcggataagatattaggtggcagtttgataccactagaaagagaaaaaaaagattcgaag gaatcaaaaaaaagggaaaattgggtctatgttcagtggaaaaaaattctcaagagcaag gaaaagtattttgttttggttcgacctgcagtcgcgtatgaaatgaacgaagggagaaat ttagcaacacttttcccacaggatctcttcgaggaagagggtaatctccaacttcgactt gtcaattttatttctcatgaaaatagcaagttaactcaaagaatttatcatacgaatagt caattcgttcgaacttgcttagtattgaattgggaacaagaagaaaaagaggaggctcgt gcttcccttgttgagataagagcaaatggtctgattcgcgatttcctaagaattgggtta atcaaatccactatttcgtatacacgaaaaaggtatgatagcagaagtgcaggactgatt ctccataataggttagatcgcaccaataccaattccttttattccaaggcgaagattcaa tcacttagccaacatcaagaagctattggtaccttgttgaatcgaaataaagaataccaa tctttgatggttttgtcggcatccaactgttctcgaattggtttttttaagaattcaaaa aatcccaatggggtaaaagaatcgaatcctagaattcctattccaaaattttgggggctc tttcgaaatttttcgggactcttaggtactattgcacctagtatatcgaatttttcttca tcttactatttactaacgtataatcagatcctgttaaaaaagcatttgctccttgacaat ttgaaacaaaacttcaaagtacttcaaggacttaaacactctttaataaatgaaaatcaa aggacttcaaatttcgatagtaacatcatgttggatccattccagttaaattggcacttt ctccctcatgattcttgggaagagacatcagcaaaaattcaccttggacaatttatttgc gaaaatgtatgtctatttaaatcgcacataaaaaaatcaggtcaaattttcattgtaaat atagattcctttgttataagagcagctaagccttatttggccactacaggagcaactgtt catggtcattatggagaaatcctttacaaaggggataggttagttacgtttatatacgaa aaagcgagatctagtgacataacgcaaggtcttccaaaagtagaacaaatcttcgaagcg cgttcaattgattcactatcgccgaatctcgaaaggagaattgaggattggaatgagcgt ataccaagaattcttgggggtccttggggattcttgattggagctgagttaaccatagcc caaagtcgtatctctttggttaataagatccaaaaggtttatcgatcccaaggggtacag atccataatagacatatagagattattatacgccaagtaacatcaaaagtgcgggtttcc gaagatggaatgtctaatgttttttcacctggggaattaattggactattgcgagcagag cgagcagggcgggctttggatgaatcgatctattatcgggcaatcttattgggaataaca agggtttccctgaatacccaaagtttcatatctgaagcaagttttcaagaaactgctcga gttttagcaaaagctgccttacgaggtcgtattgattggttgaaaggcctgaaagaaaac gtagttctgggggggattatacctgttggtaccggattccaaaaatttgtgcaccgttac ccacaaaacaagaacctttatttcgaaattcaaaaaaaaaaactatttgcgtcggaaatg agagatattttgtttctccatacagaattagtttcttctgattctgacgtaacaaacaat ttctatgagacatcagaatcaccatttaccccatttatatga

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