Oryza sativa japonica (Japanese rice) (RefSeq): 4324336 Help Entry 4324336           CDS       T01015                                  Name (RefSeq) THO complex subunit 2 isoform X1   KO K12879   THO complex subunit 2 Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03013   Nucleocytoplasmic transport osa03040   Spliceosome Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     4324336   09122 Translation    03013 Nucleocytoplasmic transport     4324336  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4324336    03041 Spliceosome [BR:osa03041]     4324336 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      4324336 Spliceosome [BR:osa03041]  Complex C   Other components    EJC/TREX     4324336  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     4324336 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Tho2 THOC2_N Thoc2 Motif Other DBs NCBI-GeneID:  4324336 NCBI-ProteinID:  XP_015615751 LinkDB All DBs Position 1:complement(39960255..39976012) Genome browser AA seq 1779 aa AA seqDB search MSPPLQAPDYKHVTEECLREWKGQPAAAAAFRVPDPVPMARFLYELCWAVVRGDLPPQKC RVALDSVEFVEEAQRGEVGSVLADIIAHLGQDVTISGEYRSRLVKMTKSFVESSLIAPRL LQERCEEEFLWEVELSKSKGQDLKAKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQ IGSDLACQNSSSVTMSIIKSLIGHFDLDPNRVFDIVLECFELYPDNTIFCQLIPLFPKSH AAQILGFKFQYYQRLDVNSTVPPGLFRIAALLVKSGFIDLDSLYAHLLPNDDEAFEHFDS FVTRKIDEASNIGKINLAATGKDLMDDEKQEITIDLYTALEMENDIIDERAPEIEKNQKL GLLLGFLSVHDWDHAQLLFERLARLNPVEHVEICDSLFRLIERSISSVYDIIFQTHYKMP RNPVYMMDTSPSSSQSFSVDPPKEFFQMLSACGPYLHRNTQLFQKVCRVLKAYHLSAKES IRTAGVMSPDSRIEEALGSCLLPSLQLIPANPAVDMEIWGVLSLLPYETRYRLYGEWEKD TEQNPIVLAARQTAKLDTRRLLKRLAKENLKQLGRMVAKLAHANPMTVLRTIIQQVEAYR DMITPVVDAFKYLTQLEFDILQYIVIERLAQGGREKLKDDGLNLSDWLQCLASFWGHLCK KHHSVELRSLFQYLVNQLKKDTGIELVVLEELIQQMANVQYTENMTEEQVDAMAGSETLR LQASSLFGSTRNSKVLTKSTNKLRDSLLPKEEPKLAIPLLLLIAQHRSKIIINADATYIK MVSEQFDRCHGILLQYVEFLSTAVTPTTYVQLIPPLEDLINKYHIEPDVAFLIYRPVMRL FKSTNGGDTYWPLDDNEEGESVSCDDLILHPDTSHKSIMWSDLLSTVRNTFPAKTWNGLS PDLYATFWGLTLYDLHFPKDRYDAEIKKLHENLKQLEDNSDNSSIAISRRKKDKERIQDL LDKLNNESHKHQQHIASVLQRLGREKVKWLNSSPDALKINMEFFQRCIFPRCVFSMQDAV YCAMFVQTLHSLETPFFNTVNHIDVFICKTLQPMICCCTEYEAGRLGRFLHETLKMAYRW KSDESLYERECGNKPGFAVYIRYPNSQRVSYSQFVRVHWKWSGRITKVLNQCMESKEYME IRNALIVLTKISSIFPVIRKSGVNLEKRVAKLKGDEREDLKVLATGVAAALAARKSSWLS EEEFGMGLLDLKQGPAKIVPGNQSADPLTAKDQSVRAKSIEGRHERSEAAMKPDAQQKKN ALAANGSDNQMPSSSAQGKVSGIIRGSDEPPKLLSDEGVKVSKPTAESETRVPQKRVAHN AGKVSKHDMVKEDTKSGKSTNRGVTQQGSSVPVDKEVLSQAADGVQDTTSNSLAASNGNL HTAPRKVSASSQKSTLLATHTGGAANSSGESTDLIDSNMKQQKRFVPTEEQDRGTKWRKG ESEGRDGDFTEHTDKDRNLDSRLVDKFRPMDHDKSASEEQILSRPEKSKEKADDKYDRDP REKADRTERRRGEDIERPTDKSLERRERSIERMQERGTDRAPDKGREDRNKEERNKVKHA EPSIDRAHPSDERFRGQSLPPPPPLPASFVPQSVGNRRDEDTDRRGGSTRHNQRSSPRRD DKEKWHLEDNAASLQDDGKHRREEDIRDRKREDRDVSSSKVDDRDRDKSSIVKDESDPNS ASKRRKIKRDQSGLEAGEYAPSAPQLPSHGTSSSQVFETRERERKGAISQHRISHADDLP RIHGKDSSKTSRREADQVHEREWEEEKRSRTETKRKHRK NT seq 5340 nt NT seq  +upstreamnt  +downstreamnt atgtcgccccctctccaggcgcccgactacaagcacgtcacggaggagtgcctccgcgag tggaagggccagcccgccgccgccgccgccttccgcgtccccgatccggtccccatggcg cgcttcctctacgagctctgctgggcggtggtgcggggggacctgccgccgcagaagtgc cgggtggctctggactcggtggagtttgtggaggaggcgcagcgaggggaggtcggctca gtactcgccgacatcatcgcccacctagggcaggatgttacaatctctggtgaatatcgc agccgtcttgtcaaaatgaccaaatcatttgtggagtcgtcattgattgcgcctaggctc cttcaagagcgatgcgaggaagagttcctctgggaggttgaactgagtaagtcaaagggg caggatttgaaggctaaggaggtcagggtcaacacacgtctcctttatcagcaaactaaa ttcaaccttttaagagaggaaagtgagggctacgccaaattggtaaccctcctttgtcaa attggttcagatttggcttgtcaaaattcttcttcagttactatgagcattataaagtca ttgattgggcattttgacctggacccaaatcgtgtgtttgatattgttctggaatgtttt gagctctatccggataataccatcttttgtcagcttatacctcttttccctaagtcccat gctgctcaaatattggggttcaagttccaatattaccaacgattggatgtcaatagcact gttccacctgggcttttccggatagcagctttgttggtcaaatctggttttattgacctt gatagcctctatgctcatttacttccaaatgatgatgaggcatttgagcattttgactcc ttcgtcacgaggaaaatcgatgaggctagtaatataggcaaaataaatcttgctgccact gggaaggaccttatggatgacgagaagcaagaaataactattgatttgtacacagcattg gagatggaaaatgatataattgatgagcgagcccctgagattgaaaagaaccagaaactt ggacttcttcttggtttcctgtcagttcatgattgggatcatgcacaactcctctttgag cgtcttgcacgcctaaatcctgttgagcatgttgaaatttgtgatagtttatttagactt attgaaaggagtatttcttcagtctatgatataattttccaaacacattataagatgcct cgtaaccctgtttatatgatggacacatcaccttcctcttcacaaagtttttcggttgat ccgccgaaagagtttttccaaatgctttctgcttgtggaccataccttcatcgtaacaca caattatttcagaaggtttgcagagtacttaaagcgtaccatctgtcagcaaaagagtca atccgtacagcaggtgtaatgtctccagactcgcgaattgaagaagcacttggatcgtgc ttgctaccatcattgcagcttatacctgcaaatcctgctgttgatatggagatatgggga gttctttctcttcttccttatgagacccgttatcgcttatatggtgaatgggagaaggat accgaacaaaacccaattgtccttgctgcaaggcaaactgcaaagttggataccagaagg ctcttaaagcggcttgctaaggaaaatctgaagcaacttggccgcatggtggctaaactt gcccatgcaaatccaatgacagtacttcggacaattatccaacaggttgaagcatatagg gacatgataactccagtcgtcgatgcttttaaatacttgactcagctggagtttgacatc ttgcaatatattgtaattgaacgcttggctcaaggtggccgtgagaaacttaaagatgat ggtcttaatctatctgattggcttcagtgtcttgcatcattctgggggcacctgtgcaag aagcatcattcggtggagctaagaagcctttttcagtaccttgttaatcagctgaagaaa gacacaggcattgagcttgttgtactcgaggaactcattcagcaaatggcaaatgtgcaa tacactgagaacatgactgaggagcaggttgatgctatggcagggagtgaaacattgcgg cttcaagcttcatcactatttggatcaacaagaaattctaaggttctgaccaagtctaca aacaaattgagggattctttgcttccaaaagaagaacctaaacttgccattcccctttta ctgcttattgctcagcatcgatccaagattataattaatgctgatgccacatatatcaaa atggtcagtgagcagtttgatcggtgccatggaatactacttcagtatgttgagtttctt tcaactgcagtaactccaacaacttatgttcaactaatacctccgctggaagatctgatt aataagtatcatatcgagcctgacgttgcttttcttatataccgacctgtgatgagactt ttcaaaagcactaatggaggtgacacctattggcctttggatgacaatgaagaaggggag tctgtatcatgtgatgatctgatattgcatcctgacacatctcataagtcaatcatgtgg tctgatcttcttagcacagtccggaacactttcccagcaaaaacctggaatggtttatca cctgatttatatgctactttctgggggttaacactatatgatcttcatttccccaaagat cgttatgatgcagaaataaagaagctgcatgaaaatcttaaacaactggaagataattcg gataactctagtattgcaatctcacgacgcaagaaggacaaggagagaatccaagatttg cttgacaaattgaacaatgaatcacataagcaccaacaacacattgcatcagtgctccaa aggctaggtcgtgaaaaggttaagtggttaaattccagtccagatgctctgaagatcaac atggaatttttccagcgctgcatattccctcgctgtgtttttagcatgcaagatgctgtg tattgtgctatgtttgtccaaacactgcactcactcgagactccatttttcaacacggtg aatcatatcgatgttttcatctgcaaaactctacagccaatgatttgttgctgcacagag tatgaggctggcaggctgggaaggtttcttcatgagacactgaagatggcctaccgttgg aagagcgatgaatctttatatgagcgtgaatgtggaaataagccaggtttcgctgtgtac atcagatatccaaatagccagcgtgtatcttatagccagtttgttcgagttcattggaag tggagtggacgaataactaaggtgctgaaccagtgcatggaatcaaaagaatacatggaa atcagaaacgcccttattgtgctcacaaagatatctagcatttttcctgtgatacgcaaa agtggagtcaatcttgagaaacgtgttgctaagctgaagggggatgaaagggaagatctg aaagttctggcaactggtgtagctgctgctttggcagcccgcaagagctcatggctatct gaagaagagttcggcatgggtctccttgatcttaagcaagggccagcaaaaattgtgcct ggaaatcaatcagcagatcctttgacagcaaaagatcagagtgttcgtgcaaaatccatt gagggtaggcatgaacggtcagaagctgccatgaagcctgatgctcaacaaaagaaaaat gccttggctgcaaatggatctgataaccaaatgccatcttcttctgcacaaggaaaagtt tcagggattatacgaggttctgatgaacctcccaaacttctatctgatgagggagttaag gtttcaaagcctactgcagaatctgagacaagggtgccccaaaagcgtgtggcacacaat gctggcaaggtatctaagcatgatatggtaaaggaagatacaaaatctgggaaatctaca aacagaggtgttactcaacaaggctcctctgttcctgttgataaagaagtattgtctcag gcagctgatggtgtgcaagataccaccagtaattctttggctgctagcaatggtaactta catacggctccacggaaggtatcagcatcctcccaaaaatcaacactgttggctacacat actggtggagcagctaattcctctggtgaatctactgacttgattgactctaatatgaaa cagcaaaagaggtttgttcctactgaagaacaagatagaggaactaaatggaggaaagga gagagtgaaggccgggatggtgacttcacagaacacactgacaaggacagaaatttggac tcgcgattggtagataaatttcgtcccatggatcatgacaagagtgctagcgaggaacaa atcctaagtaggccagagaaatcaaaagaaaaggctgatgacaaatatgaccgggatcct agagaaaaagcagatcgaactgagaggcgtcgaggggaagacatcgagagaccaacagac aaatcattggaaaggagagagcgttctattgaaagaatgcaagaaagagggacagataga gctcctgataaaggaagagaagacaggaataaggaggagagaaataaagttaagcatgct gaaccatccatagatcgtgcacatccttctgatgaacggttccgaggacaaagcttgcca ccacctccaccccttccagcaagttttgtaccccaatcagttggtaacaggagagatgaa gataccgatcgaaggggtggtagtactaggcataaccaacgatcatctcctaggcgtgat gataaagaaaagtggcacttggaggacaatgctgcgtcgttgcaggatgatggaaagcac cggagagaggaagatattcgggacagaaagcgtgaagatagggatgtttcgtcaagcaag gtagatgaccgggatagggacaaaagtagtattgtgaaggatgaaagtgatcctaatagt gcttccaaacggcgaaagatcaagagagatcagtctggtttagaagctggggaatacgca ccttctgctccacagcttcccagtcatggaaccagtagctcacaagtgtttgaaacacga gagcgagaacgaaagggggcaatttcacagcatcggatatcccatgctgatgaccttcct agaatacatggaaaggactcgagcaagacaagtcgtagagaggctgaccaagtacatgag agagaatgggaagaggaaaagcgatcaagaacggaaactaaaaggaagcaccggaagtag

Oryza sativa japonica (Japanese rice) (RefSeq): 4331353 Help Entry 4331353           CDS       T01015                                  Name (RefSeq) THO complex subunit 1   KO K12878   THO complex subunit 1 Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03013   Nucleocytoplasmic transport osa03040   Spliceosome Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     4331353   09122 Translation    03013 Nucleocytoplasmic transport     4331353  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4331353    03041 Spliceosome [BR:osa03041]     4331353 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      4331353 Spliceosome [BR:osa03041]  Complex C   Other components    EJC/TREX     4331353  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     4331353 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  efThoc1 Motif Other DBs NCBI-GeneID:  4331353 NCBI-ProteinID:  XP_015627836 UniProt:  Q10SU9 Q0DVV9 LinkDB All DBs Position 3:602449..609350 Genome browser AA seq 638 aa AA seqDB search MAEPTPPLPSNAGLRILLSKDRPPASSSSALAAATSAAVSSHTDRDRIIGVFRDALSRTE SPEAFALQAVQDAIKPQKQTVLVLEENQSLENALRKLLQELASSAVQSGKRIMQYGDNEE NNCPITRLLDIVLYLCERGHVEGGMVFQLLEDLTEMSTIKDCKDVFGYIESKQDVLGKQE LFGRGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSERSALNIKGVFNTSNET KYEKDATDGISVDFNFYNTLWSLQEHFSNPALTAANLTRWQKFVSNLTVVLSTFEAQPLS DDDGKLNNLDQEEDAAFNIKYLTSSKLMGLELKDPSFRRHILVQCLIFFDFLKAPGKTDK EGPTGSMKEEIDSCEERVKKLLEIIPPKGKDFLQSIEHILEREKNWVWWKRDGCLAFEKQ PFEKKPGQAGVRKRKPRWRLGNKELAQLWKWAEQNPNALTDSERICMPSVTEYWKPLAED MDPSAGIEDEYHHKNNRVYCWKGLRFSARQDLEGFSRFCDYGIEGVVPQELLPPEVRSKF YSKPGDKAKRPKREDPKGTSAQPKEQQVVSATPETDGGGSGAEPEEGAVPMDSDNAAIDE GRKQSPEEVSGPESGQCEAEADGEDNMKNEASKDGPSA NT seq 1917 nt NT seq  +upstreamnt  +downstreamnt atggcggagcccacgccgccgctgccgtcgaacgccgggctccgcatcctcctcagcaag gaccggccaccggcctcctcttcctccgcgctcgccgccgccacctccgccgccgtctcc agccacaccgaccgcgaccgcatcatcggagtgttccgggatgcgctgtctaggactgaa tcccctgaagcttttgcccttcaggccgttcaggatgcgattaaacctcagaagcaaaca gtgttggttctggaggagaaccaatccttagaaaatgctctacgcaaattgctgcaggaa cttgcatcatctgcagttcaatctggtaaaagaataatgcaatatggggataatgaagaa aataattgcccgataacacgtcttcttgatatcgtgctttacctttgtgaaagagggcat gttgagggaggtatggtattccagctgttagaagatctgacagaaatgtcaactatcaaa gactgcaaagatgtatttggatatattgagagcaaacaagatgtcttggggaagcaagag cttttcgggcgtggcaagcttgttatgctaaggacttgcaaccaactacttcgaagatta tcaaaggcaaatgatgtggtattctgcggacgtattatcatgtttctagcacatttcttc ccattatcggaacgttcagctctcaatatcaagggggtttttaacacatcaaatgaaaca aagtacgagaaagacgctacagatggaatttctgttgatttcaacttctacaatacccta tggagtctgcaggagcattttagtaaccctgctttaactgctgcaaatctgacaagatgg caaaagtttgtgtccaatttaacggttgtgctaagcacatttgaagctcagcctctcagt gacgatgatggaaaacttaacaatcttgaccaagaggaagatgctgctttcaatattaag tacctgacaagtagtaaattgatgggtttggagttgaaggacccaagttttcgacgccac atccttgtccagtgcctcatattcttcgactttctcaaggcacctggaaagactgacaaa gaaggtccaactgggagcatgaaagaggaaatcgattcttgtgaagagcgtgttaagaaa cttctggagataattccaccaaaagggaaggacttcctacaaagcatcgagcatattctt gagcgggagaaaaattgggtatggtggaaacgagatgggtgtctagcgtttgaaaaacaa ccttttgaaaagaaaccaggccaagctggagtcagaaaacgtaagccaaggtggagattg ggaaacaaagaacttgcccaactgtggaaatgggctgaacaaaaccctaatgctctgact gattctgaacgtatttgcatgccatcagtaacagaatattggaaaccacttgcagaagat atggatccatctgctggtattgaggatgaatatcaccacaagaataatcgtgtgtattgc tggaaagggttacgattttcagccaggcaggatttggaaggtttttctcggttttgtgat tacggtattgaaggagttgtacctcaagaactgttgccacctgaagtccgttccaagttt tattcgaagcctggtgacaaggctaaacgacctaagagggaagacccaaaaggcacttca gcccaacccaaggaacaacaggttgtttcagccacaccggagaccgacggtggcggtagc ggggctgaaccagaagaaggtgctgtgccaatggattctgataatgccgcgatcgatgaa ggccggaagcagagcccagaggaggtgtctggacctgaaagcgggcagtgcgaggctgaa gccgatggcgaagataacatgaaaaatgaggctagtaaagacggtccatccgcatag

Oryza sativa japonica (Japanese rice) (RefSeq): 4332426 Help Entry 4332426           CDS       T01015                                  Name (RefSeq) THO complex subunit 4A   KO K12881   THO complex subunit 4 Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03013   Nucleocytoplasmic transport osa03015   mRNA surveillance pathway osa03040   Spliceosome Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     4332426   09122 Translation    03013 Nucleocytoplasmic transport     4332426    03015 mRNA surveillance pathway     4332426  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4332426    03041 Spliceosome [BR:osa03041]     4332426 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      4332426     TREX complex      4332426 Spliceosome [BR:osa03041]  Complex C   Other components    EJC/TREX     4332426  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     4332426 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 FoP_duplication RRM_3 Motif Other DBs NCBI-GeneID:  4332426 NCBI-ProteinID:  XP_015630777 UniProt:  Q10N90 A0A8J8Y671 LinkDB All DBs Position 3:complement(9449419..9453113) Genome browser AA seq 273 aa AA seqDB search MAETLDMTLDDIIKNNKKANPSSGRGRRGSAAGGGGGGGGGVGGGGGGGVGPTRRPFKRS GNRAGPYQPPKAPESAWQHDMYSDVAAGGGGGSGGGGRVSAIETGTKLYISNLDFGVSTE DIKELFSELGDLKKYVIHYDRSGRSKGTAEVVFARRGDAVAAVKKYNNVQLDGKPMKIEI LGTNTPTAAAALPANNGGYVRNVAKSAPRGGPAGLPQGRPRPRGGGRRRGGGGGSGGPGG SGGRRGKERSQPKSAEELDADLEKYHADAMQTN NT seq 822 nt NT seq  +upstreamnt  +downstreamnt atggcggagaccctcgacatgacgctcgacgacatcatcaagaacaacaagaaggccaac ccctcgtccggccgcggccgccgcggatctgccgctggcggcggcggcggcgggggtggg ggtgttggtggtggcggcggcggcggcgtggggccgacgaggcggcccttcaagaggtcg gggaacagggcggggccctaccagccgcccaaggcccctgaatcggcgtggcagcacgac atgtactcggatgtcgcggcaggcggcggcggcggcagcggcggaggcgggagggtctcg gctatcgagactggcaccaagctctacatctccaatttggacttcggcgtctcgaccgag gatatcaaggagcttttctctgaattaggtgatcttaagaaatacgtaattcactatgac agaagtgggaggtctaagggaacagctgaagttgtatttgcaaggcgtggcgatgctgtc gcagcagtgaagaaatataacaatgtgcaacttgatggtaagccaatgaaaatagagatt cttgggaccaatactcctacagctgcagctgctcttccagcaaataacggaggctacgtt agaaatgttgctaagagtgcaccaaggggtggcccagctggactaccgcagggtagacct cgtccaagggggggtgggaggcgccgtggtggcggaggaggcagtggtggtcctggtgga tccggtggtcgccgtggcaaagagcgtagccagccaaagtctgctgaagaacttgatgct gacttggagaaataccatgcagatgcgatgcagaccaactag

Oryza sativa japonica (Japanese rice) (RefSeq): 4340675 Help Entry 4340675           CDS       T01015                                  Name (RefSeq) THO complex subunit 4D   KO K12881   THO complex subunit 4 Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03013   Nucleocytoplasmic transport osa03015   mRNA surveillance pathway osa03040   Spliceosome Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     4340675   09122 Translation    03013 Nucleocytoplasmic transport     4340675    03015 mRNA surveillance pathway     4340675  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4340675    03041 Spliceosome [BR:osa03041]     4340675 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      4340675     TREX complex      4340675 Spliceosome [BR:osa03041]  Complex C   Other components    EJC/TREX     4340675  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     4340675 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 FoP_duplication RRM_3 Motif Other DBs NCBI-GeneID:  4340675 NCBI-ProteinID:  XP_015644210 UniProt:  Q652G7 B9FSK8 LinkDB All DBs Position 6:complement(8129435..8134498) Genome browser AA seq 294 aa AA seqDB search MATSLDMSLDDMIKNNRNSRGRGRGRSQGGGRGRGDGQRFSYGSGRGRGAGTFRGRGVGV PSRRPLGVSTRSSSYAIAKSFNKTKDIVWRQDLFEDSMVAAGLSVTESSTKLYISNLHYG VTKEDIQELFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYNNVRLDGKPM KIEVIGADLGMAAPSAPRVSVVPGARGRGQREVVMMPGGSGFGRGAAGSSNFIPGWKRNN FAQRGGQGRGRGRGRNNFGRGRGRGYVRKGPVEKSAEQLDKELDSYHSGAMNVD NT seq 885 nt NT seq  +upstreamnt  +downstreamnt atggcgacatctttggatatgtcactggacgatatgattaagaacaacagaaattctagg gggagaggaaggggtaggtcacagggaggaggtcgaggcagaggtgatggccaaaggttc agctatggttcagggcgtggacgtggtgctggcaccttccgtggaaggggagtaggagtg ccttcacgaaggccacttggtgttagtactcggtcatcatcgtatgctattgccaagtca ttcaacaaaaccaaggatattgtatggaggcaagatctgtttgaggacagcatggttgct gctggcctttctgtgacagaatctagtacaaagctgtatatttcaaacttgcactatgga gtgacaaaagaagatatacaggaacttttttccgagatgggtcatttgaagcattgtgct gttcattatgataacaatagacgcccaactggttcagctgaggtgatattcactaggagg agtgaagcagttgcggctttaaaacgatataataatgtgcgccttgatgggaagccaatg aagatcgaagtgataggagcagatttgggtatggctgctccttcagcaccccgtgttagt gttgtccctggtgcaaggggtagaggacagcgagaagttgtaatgatgcctggtgggagt gggtttggtcgaggtgcagctggttcatctaatttcattcctgggtggaagcgtaacaat tttgcacaaagaggtgggcaaggccgaggtcgtggccgtggacgtaataactttgggcgt gggcgtgggcgtggctatgttcggaagggacctgtggagaaatcagctgagcaattggac aaggagctggatagctatcattccggggcaatgaatgtcgactaa

Oryza sativa japonica (Japanese rice) (RefSeq): 4342793 Help Entry 4342793           CDS       T01015                                  Name (RefSeq) THO complex subunit 4A isoform X1   KO K12881   THO complex subunit 4 Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03013   Nucleocytoplasmic transport osa03015   mRNA surveillance pathway osa03040   Spliceosome Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     4342793   09122 Translation    03013 Nucleocytoplasmic transport     4342793    03015 mRNA surveillance pathway     4342793  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4342793    03041 Spliceosome [BR:osa03041]     4342793 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      4342793     TREX complex      4342793 Spliceosome [BR:osa03041]  Complex C   Other components    EJC/TREX     4342793  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     4342793 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 FoP_duplication RRM_3 Motif Other DBs NCBI-GeneID:  4342793 NCBI-ProteinID:  XP_015646999 LinkDB All DBs Position 7:complement(7627360..7635965) Genome browser AA seq 277 aa AA seqDB search MSSGLDMSLDDLIKQSKTKPKGGAPSSSGPTRRAAPPAARAAPYPPAGPKAAGGASPYGV YSEHVAAMAGVVPRPRPPPAAAAAAARSLETGTKLHISNLDPGVTVDDVQELFSEIGELK RYSVNYDKDGKSQGTAEVVFARKVDALEAIKRYDGVILDGNPMKIDLIGNNSETSPMPPT APLLYNPPFPNYPNSVPRRGGQRGQFHQGNGRPGNSQGIGGGPRGFQGSGRPGSGSQGGG GCSQGKTRGNERSRIQKSAADLDAELDQYHAEAVKEK NT seq 834 nt NT seq  +upstreamnt  +downstreamnt atgtcgagtggcctggacatgtccctggacgacctcatcaagcagtccaagaccaagccc aagggcggggccccctcctcgtcggggcccacccgccgcgcggcgccgccggcggcgcgc gcggcgccgtacccaccggccggccctaaggccgccggcggcgcttcgccgtacggggtc tactccgagcacgtggccgccatggcgggggtcgtgccgcggccgcggccgccgccagcc gccgccgccgccgccgcgcggtctctggagaccgggacgaagctgcacatctccaacctc gaccccggcgtcaccgtcgacgacgtccaggagctcttctcggagattggtgagctcaaa cgctattctgttaactatgataaggatggaaaatcacagggaacggcagaagttgtgttt gcaagaaaagtggatgctttggaggctattaagagatatgatggtgtaatacttgatggt aaccccatgaagatagatctcatcggaaataattctgagacatccccaatgcccccaaca gcacctttgttgtacaatccaccttttccgaactaccctaacagtgtaccacggagaggt ggccaaagaggacaatttcatcaaggtaatggtcgccctggaaacagtcagggcattgga ggtgggccaagaggatttcaaggtagcggtcgtcctggaagcggtagtcagggcggtggt ggctgcagccaggggaaaacccgtggaaatgaacggagtcgcatacaaaaatcagctgca gatcttgatgctgaattggaccagtatcacgcagaagcagtgaaggagaaatga

Oryza sativa japonica (Japanese rice) (RefSeq): 4345621 Help Entry 4345621           CDS       T01015                                  Name (RefSeq) THO complex subunit 4D isoform X1   KO K12881   THO complex subunit 4 Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03013   Nucleocytoplasmic transport osa03015   mRNA surveillance pathway osa03040   Spliceosome Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     4345621   09122 Translation    03013 Nucleocytoplasmic transport     4345621    03015 mRNA surveillance pathway     4345621  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4345621    03041 Spliceosome [BR:osa03041]     4345621 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      4345621     TREX complex      4345621 Spliceosome [BR:osa03041]  Complex C   Other components    EJC/TREX     4345621  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     4345621 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 FoP_duplication RRM_3 Motif Other DBs NCBI-GeneID:  4345621 NCBI-ProteinID:  XP_015649900 UniProt:  Q0J5K6 Q7EY69 LinkDB All DBs Position 8:complement(20578930..20583507) Genome browser AA seq 286 aa AA seqDB search MAYYARRGGDRVSGGGRVQGGGGGGGGGGRGGYVLRGRSGMPPRGPLGLGVNSRPSARTI AKSFSRTKDMTWRPDLFSDSMAASGIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFA VHFDGYGRPNGTAEVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLGLPMTPRINVV GASNGRPTRTVVMTPEIGQRGSGSSSRPTGPTVNRYNRGAFQAGRGRGRGRGRAPFQSQF QGRGTGSVRGRGQFQGRGRGRRQAGKTADELDKDLETYHAEAMKTD NT seq 861 nt NT seq  +upstreamnt  +downstreamnt atggcgtattacgccaggaggggtggggatagggttagtggtggtggccgtgttcaaggt ggtggaggtggtggaggtggtggtgggagaggtggatatgtgctgcgtggaagatcaggg atgcctcctcgagggccccttggcctcggggttaactcgcggccatcagcgcgcactatt gctaagtcttttagcagaaccaaagacatgacctggagacctgatctgtttagtgatagt atggcagctagtggaattgaaactggtacaaaattgtacatttcaaacttggactatggg gtttccaatgaggatataaaggagctgttttcagaagttggtcacttgaagcgctttgct gttcactttgatggttatgggcgcccaaatggcacagcagaagtggtgtttactaggaga agtgatgcaattgctgcattgaaacgttacaataatgttctgcttgatggtaaagctatg aagatagaagttattggaagtgacttaggtttgcctatgacacctcgcataaatgtggtt ggggcttctaatggcagacctacaagaacagttgttatgacgcctgaaattggccagcgt ggcagtggttccagcagtagaccaacaggtcctacagttaatagatataaccgtggtgcc ttccaagctggccggggccgaggccgtggcaggggtcgtgccccattccagtcccagttc cagggccgtggcactggcagtgtcaggggccgtggtcaattccagggccgtggtcgcgga aggaggcaagctgggaagactgcagatgagctggacaaagacctggaaacttatcatgct gaggcaatgaagaccgactga

Oryza sativa japonica (Japanese rice) (RefSeq): 4346657 Help Entry 4346657           CDS       T01015                                  Name (RefSeq) THO complex subunit 3   KO K12880   THO complex subunit 3 Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03013   Nucleocytoplasmic transport osa03040   Spliceosome Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     4346657   09122 Translation    03013 Nucleocytoplasmic transport     4346657  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4346657    03041 Spliceosome [BR:osa03041]     4346657 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      4346657 Spliceosome [BR:osa03041]  Complex C   Other components    EJC/TREX     4346657  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     4346657 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ANAPC4_WD40 WD40 eIF2A DUF2121 Motif Other DBs NCBI-GeneID:  4346657 NCBI-ProteinID:  XP_015610692 UniProt:  B9G2Q3 Q69VQ7 LinkDB All DBs Position 9:7271233..7276922 Genome browser AA seq 332 aa AA seqDB search MEGKEDDRRRGGGGGSSTPGMNLKNLVSREYFGHKKKVHSVAWNCLGMKLASGSIDHTAR VWSIDPHGHSKVKDIELKGHTDCVDQLCWDPKHPDTVATAAADKSIRLWDARSGKCQVVE LSGENINITYKHGGTQIAVGNKEDELTIVDVRKLKALHKFKFNYEINEIAWNKTGDLFFI TTGLGNVEVFGDPSLDDTLHVVGKLNAHTAGCYCIGMDPLDRYFAVGSADSLVSLWDVKE LLCIKTFTKLEWPVRTVSFNHTGEFLAYASEDPFIDIANVQTGRSIHQIPCKAAMNSVEW NPKYNLLAYAGDDKNKYQADEGVFRIFGFEST NT seq 999 nt NT seq  +upstreamnt  +downstreamnt atggaggggaaagaagacgacagacggcggggcggcggtggcggaagctcgacgccgggg atgaacctgaagaacctggtgtcgagggagtatttcggccacaagaagaaggtgcactct gtagcatggaactgcctaggcatgaagcttgcttcaggctctattgatcatactgcacgt gtatggagtatcgatccccatggccattccaaggttaaagacattgaattgaaaggccac acagattgtgtagatcagctctgctgggatccgaagcatcctgatacagttgctacagca gctgctgacaagtcaattcgcctctgggatgcacggagtggaaaatgtcaagtcgtcgaa cttagtggagaaaacatcaatatcacttataaacatggtggtactcaaatagctgttgga aacaaggaggatgagttgacaatagtggatgttcggaagctaaaagcccttcacaaattt aagtttaattatgagataaatgagattgcatggaacaaaactggagatttattcttcatc actactggacttggaaatgttgaggtatttggtgatccttcccttgatgacacccttcat gtggttggcaaattgaatgctcatacagcgggttgttattgcattggaatggatcccctt gataggtattttgctgttggaagtgcagattcacttgtcagtctttgggatgtcaaagag ctcctttgcattaaaacctttaccaaactcgagtggcctgtaagaacagttagcttcaat catactggagagtttcttgcatatgctagcgaagatcccttcattgacattgccaatgtt caaactggacgatcgattcatcagattccatgcaaggcagctatgaatagtgttgaatgg aaccccaagtacaacctcctggcttacgcaggagacgacaagaacaagtaccaggctgat gaaggtgttttccgaatatttggctttgaaagcacataa

Oryza sativa japonica (Japanese rice) (RefSeq): 4349526 Help Entry 4349526           CDS       T01015                                  Name (RefSeq) THO complex subunit 4A isoform X1   KO K12881   THO complex subunit 4 Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03013   Nucleocytoplasmic transport osa03015   mRNA surveillance pathway osa03040   Spliceosome Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     4349526   09122 Translation    03013 Nucleocytoplasmic transport     4349526    03015 mRNA surveillance pathway     4349526  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4349526    03041 Spliceosome [BR:osa03041]     4349526 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      4349526     TREX complex      4349526 Spliceosome [BR:osa03041]  Complex C   Other components    EJC/TREX     4349526  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     4349526 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 FoP_duplication RRM_3 Motif Other DBs NCBI-GeneID:  4349526 NCBI-ProteinID:  XP_015617723 LinkDB All DBs Position 11:4347..7034 Genome browser AA seq 233 aa AA seqDB search MAADSLDMSLDDLITNKYKRRSRPDPAPSARRFHSRAATRAAAAPYHAITFQAPPTAYTH PTPVETGTKLHISNLDYAVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEVVFSRKSD ALAAVKRYNNVQLDGKPMKLELIGINIEPPPPAMFGFAAPAGYFDFPPKSAEIFSGPGRG GRGWPRGRGGFGGRGRGHVGRGRGRGDRGSRKISAEDLDADLDKYHAEGMQMS NT seq 702 nt NT seq  +upstreamnt  +downstreamnt atggcggcggactcgctggacatgtccctcgacgacctcatcaccaacaagtacaagcgc cgctcccgtccagatccagcgccctctgcccgccgcttccactcccgcgccgccacccgc gctgctgccgctccctatcacgccatcacctttcaggcgccgcccacggcctacacccac ccgacgcccgtcgagaccggcaccaagctccacatctccaacctcgactacgccgtctcc aatgaggacatcaaggaactcttctctgaggttggcgatgtcaagcgttactctattaac tatgacaagagtggaagatccaagggaactgcagaggttgtattttccagaaaatctgat gccctggctgctgttaagagatacaacaatgtgcagctggatggcaaacctatgaaactt gagctcattggtataaatattgagccaccaccacctgctatgtttggtttcgctgcacca gctggatacttcgattttcctcccaaaagtgctgaaattttcagtggacctggcaggggt ggaagaggatggcctcggggcaggggtggatttggtgggcgtggtcggggtcatgtgggt cgtgggcgagggaggggagaccgtggaagtcggaagatttctgctgaagacctggatgct gacttggacaagtaccatgcggaaggaatgcaaatgagctag

Oryza sativa japonica (Japanese rice) (RefSeq): 4351236 Help Entry 4351236           CDS       T01015                                  Name (RefSeq) THO complex subunit 4A isoform X1   KO K12881   THO complex subunit 4 Organism osa  Oryza sativa japonica (Japanese rice) (RefSeq) Pathway osa03013   Nucleocytoplasmic transport osa03015   mRNA surveillance pathway osa03040   Spliceosome Brite KEGG Orthology (KO) [BR:osa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     4351236   09122 Translation    03013 Nucleocytoplasmic transport     4351236    03015 mRNA surveillance pathway     4351236  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:osa03019]     4351236    03041 Spliceosome [BR:osa03041]     4351236 Messenger RNA biogenesis [BR:osa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      4351236     TREX complex      4351236 Spliceosome [BR:osa03041]  Complex C   Other components    EJC/TREX     4351236  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     4351236 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 FoP_duplication RRM_3 Kdo_hydroxy Motif Other DBs NCBI-GeneID:  4351236 NCBI-ProteinID:  XP_015620448 LinkDB All DBs Position 12:2686..5426 Genome browser AA seq 237 aa AA seqDB search MAADSLLDMSLDDLITNKYKRRSRPGPAPSARRSHSRAATRSAAAPYHAITFQAPPTAYV HPTPAANVETGTKLYISNLDYAVSNEDIKELFSEVGDVKRYSINYDRSGRSKGTAEVVFS RKSDALAAVKRYNNVQLDGKPMKLELIGINIEPPPPAIFGFAAPAGYFDFPPKSAEIFSG PGRGGRGWPRGRGGFGGRGRGHVGRGRGRGDRGSRKISAEDLDADLDKYHAEGMQMS NT seq 714 nt NT seq  +upstreamnt  +downstreamnt atggcggcggactcgctgctggacatgtccctcgacgacctcatcaccaacaagtacaag cgccgctcccgtccaggtccagcgccctctgcccgccgctcccactcccgcgccgccacc cgctccgctgccgctccctatcacgccatcacctttcaggcgccgcccacggcctacgtc cacccgacgcccgcggccaacgtcgagaccggcaccaagctctacatctccaacctcgac tacgccgtctccaacgaggacatcaaggaactcttctctgaggttggcgatgtcaagcgt tactctattaactatgacaggagtggaagatccaagggaactgcagaggttgtattttcc agaaaatctgacgccctggctgctgttaagaggtacaacaatgtgcagctggatggcaaa cctatgaaacttgagctcattggtataaatattgagccaccaccacctgctatttttggt ttcgctgcaccagctggatacttcgattttcctcccaaaagtgctgaaattttcagtgga cctggcaggggtggaagaggatggcctcggggcaggggtggatttggtgggcgtggtcgg ggtcatgtgggtcgtgggcgagggaggggagaccgtggaagtcggaagatttctgctgaa gacctggatgctgacttggacaagtaccatgcggaaggaatgcaaatgagctag

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