Oryza sativa japonica (Japanese rice): 4324461
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Entry
4324461 CDS
T01015
Name
(RefSeq) VAMP-like protein YKT61
KO
K08516
synaptobrevin homolog YKT6
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
4324461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4324461
Membrane trafficking [BR:
osa04131
]
SNARE
VAMP, Ykt6, Sec22 (R)
Ykt6
4324461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Longin
Synaptobrevin
AcrIIA4
Motif
Other DBs
NCBI-GeneID:
4324461
NCBI-ProteinID:
XP_015622494
UniProt:
Q5JMS3
A0A8J8YI16
LinkDB
All DBs
Position
1:complement(join(43132116..43132166,43132585..43132671,43133191..43133256,43134415..43134519,43134936..43135033,43135113..43135350))
Genome browser
AA seq
214 aa
AA seq
DB search
MKITALLVLKSPGDGDSSSGGGGGEQEQEQQAAVVVANATDVSHFGYFQRNPAREFILFV
ARTVAARTPAGRRQSVQHEEYKVHCYNQNGLCAIAFTDDHYPVRSAFSLLNTVLEEYHKT
FGERWRTAKTDNTQPWQYLDDALTKYQDPAEADKLLKIQRDLDETKIILHKTIDSVLSRG
ERLDSLVEKSSDLSAASQMFYKQAKKTNSCCTIL
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcacggcgctgctggtgctcaaatcccccggcgacggcgactcgtcgtcgggt
ggcggtggcggcgagcaggagcaggagcagcaggcggcggtggtggtggcgaacgcgacc
gacgtgagccacttcggctacttccagcgcaaccccgcccgcgagttcatcctcttcgtc
gcccgcaccgtcgccgcccgcacccccgccggccgccgccagtctgtccagcacgaagag
tacaaggtgcattgctacaaccagaatggcctctgcgccatcgccttcaccgacgaccac
taccccgtcaggagcgccttctccctcctcaacacggtgctggaagagtaccacaagact
tttggggagagatggaggacagcaaaaactgataacacccagccttggcaatacctggat
gatgccttgacaaaataccaggatcctgcagaggctgacaagttgctgaaaattcagagg
gatttggatgaaactaagattattcttcacaagaccatcgatagtgtactttctagaggt
gaaagattggatagcctagtggagaagagttcagatctaagtgctgcttcacagatgttc
tacaagcaggccaagaaaaccaactcttgttgtacaatcctgtaa
Oryza sativa japonica (Japanese rice): 4325070
Help
Entry
4325070 CDS
T01015
Name
(RefSeq) VAMP-like protein YKT61
KO
K08516
synaptobrevin homolog YKT6
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
4325070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4325070
Membrane trafficking [BR:
osa04131
]
SNARE
VAMP, Ykt6, Sec22 (R)
Ykt6
4325070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Longin
Synaptobrevin
AcrIIA4
DUF4618
DUF6891
Motif
Other DBs
NCBI-GeneID:
4325070
NCBI-ProteinID:
NP_001393116
LinkDB
All DBs
Position
1:join(38142647..38142881,38143472..38143569,38144251..38144364,38144821..38144886,38145119..38145205,38145682..38145732)
Genome browser
AA seq
216 aa
AA seq
DB search
MKITALLVLKPSSSGGGASSSGGGGGSGGPEAVVLANATDVSHFGFFQRGAAREFIVFVA
RTVAQRTQPGQRQSVQHEEYKVHSHNRNGLCAVAFMDDHYPVRSAFSLLNKVLDEYQKAF
GDSWKAATKDATDAAQQWPFLTDALTKFQDPAEADKLMKIQRDLDETKIILHKTIESVLQ
RGERLDSLVEKSSDLSAASQMFYKQAKKTNQCCTIL
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcacggcgctcctcgtgctgaagccgtcgtcctccggcgggggagcatcctcg
tccggcggcggcggcgggtcgggcggccccgaggcggtggtgctggcgaacgcgacggac
gtgagccacttcgggttcttccagcggggcgccgcgcgggagttcatcgtcttcgtcgcg
cgcaccgtcgcccagcgcacccagccaggccagcgccagtccgtccagcacgaagaatac
aaggtccactcacacaacaggaatggtctttgcgcagttgcatttatggatgatcactat
cctgtacgaagtgcattttctcttctgaataaggtacttgacgaataccagaaggctttc
ggggactcttggaaagctgctacaaaagatgcaacagatgctgcccaacagtggcctttc
ttgacagatgctttgacaaagtttcaggaccctgcagaggctgacaagttaatgaaaatc
cagagggacttggatgaaacaaaaattatcctacataaaactattgagagtgtgctccaa
agaggggaaagattggatagcttggttgagaagagttcagacctgagtgctgcttcacag
atgttctacaagcaggcaaagaaaacaaaccaatgctgtactatactctga
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