Oryza sativa japonica (Japanese rice): 4324727
Help
Entry
4324727 CDS
T01015
Name
(RefSeq) protein SPA1-RELATED 4 isoform X1
KO
K26557
protein SPA1-related 3/4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4324727
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4324727
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Multi subunit type E3 associated proteins
4324727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Pkinase
PK_Tyr_Ser-Thr
WDR54
WD40_like
Motif
Other DBs
NCBI-GeneID:
4324727
NCBI-ProteinID:
XP_015650301
LinkDB
All DBs
Position
1:join(30855513..30856112,30856214..30856371,30857216..30858158,30858237..30858383,30858512..30858823,30859464..30859523,30860049..30860237)
Genome browser
AA seq
802 aa
AA seq
DB search
MEGSRVDAVAGGRRWGEGEEGGRRGGGGGGGGGGGGTGGGGGGGGRRGGEDGGEVSLREW
LDRPGRAVEAPECLHVFRQVAESVAIAHAQGVAVGSARPSCFVVSPPFARVAFIESASGS
DVSGSCSGSDGSEEADPEPSPPRRRRDGASGGEDRGGKTFPLRSVLAMELTWYTSPEEAD
DRGGATFASDVYRLGVLLFELFCTFETMEEKMRAMANLRHRVLPPQLLLKWPKEASFCQL
LMHPVPETRPKMSDVLQSEFLNRSRNSLEEREAALRLREEIEEQELLLDFLLQLQRRKQD
IADNLQDTVAFLSSDINEAHQQSALGQCGNFSFELDKEVCSETVEDQSDCGSRKRFRPEL
PAVDMEEQNRSLEECSGTVPSSVLIQESVLSKSSRLMKNFKKLETAYFLTRSKLAKQVGN
PVSSCHQVVKRTTGSPVVTEGSSIDDFALEGHYGTRQRGWMNSFLEGLCSYLSFSKLKVK
AELKQCDLLNSSNLVCSVGFDRDKEFFATAGVNKKIKVFEYNMIVNEHCDIHYPVVEMSN
RSKLSCICWNSYMKSHIASSDFEGIVQVWDVTRSQVFVEMREHERRVWSVDFSLADPTKL
VSGSDDGSVKLWNMNQAGSVGTIRTRANVCSVQFQPDSARSIAIGSADHKIYCYDLRNIR
APYCTLVGHTKTVSYVKYVDASTIVSASTDNSLKLWDLSMSQARIIDSPLRTFTGHTNTK
NFVGLSISDGYIATGSETNEVFVYHKAFPMPVLAYKFSVTDPISGQEIDDPSQFISCVCW
RGQSSTLLSANSSGNIKILEMD
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggagggctcccgtgtcgacgccgtcgcgggcgggcggcggtggggggaaggggaggag
ggtggacgacgcggaggaggaggaggaggaggaggaggaggaggaggaacaggaggtggt
ggtggtggtggagggaggagaggcggggaggacgggggtgaggtgagcctgcgggagtgg
ctggaccggccagggcgggcggtggaggcgccggagtgcctgcacgtgttccgccaggtg
gcggagtcggtggccatcgcgcacgcgcagggggtggccgtcggcagcgcgcgcccttcc
tgcttcgtcgtgtcgccgcccttcgcccgcgtcgcgttcatcgagtccgcctccggctcc
gacgtctcgggctcctgctccggctccgacggctcggaggaggccgacccggaaccctcg
cctcctcggcggcgacgggacggcgccagcggtggggaggaccgcggcgggaagacgttc
ccgctgaggagcgtgctggcgatggagctcacctggtacaccagccccgaggaggccgac
gaccgcggcggcgctactttcgcctccgacgtgtataggttaggagtgctcttgttcgag
ttgttctgtacgttcgagacgatggaggagaagatgcgagcaatggcgaacctacggcac
cgcgtcttgcctccacagctgctgctcaagtggcccaaggaagcatcattctgtcagttg
ttgatgcaccctgtgccggagacccgaccgaagatgagtgatgtgctacaaagtgagttc
cttaatcggtcaagaaatagtctggaggagcgtgaagcagcacttcggttacgcgaagag
atagaagaacaagaattactgctggattttcttctccaactacagagaagaaagcaagat
atagcagacaatttgcaggacacagttgcatttctctcttctgacatcaatgaagcgcac
cagcagtcagctctggggcagtgtggaaacttctcatttgagttggataaagaggtgtgc
tctgaaacagttgaagatcagagtgattgtggatccagaaaacgtttccgacctgagcta
ccagctgttgatatggaggaacagaatcgtagtcttgaagaatgttcgggaacagttcca
tcatctgtgctgatccaggaaagtgtgttgtctaaaagctccagactgatgaagaacttc
aaaaaacttgaaacagcatactttctcacaagatccaagttggcaaagcaagttgggaat
cctgtaagcagttgccatcaagtcgtgaaaaggactactgggtcacctgttgtgactgag
ggaagttcaatagatgattttgctttggaagggcattatggtacaaggcaaagaggttgg
atgaactcttttcttgagggattgtgtagttacttatcgttcagtaagttgaaagttaag
gcagaactgaagcaatgtgatctgctgaactcatcaaacttagtatgctctgtaggcttc
gaccgggataaagagttctttgcaactgctggtgtaaataagaagataaaagtgtttgaa
tataatatgattgtaaatgaacattgtgatattcactatcctgtggttgagatgtctaat
agatcaaaattaagttgtatttgctggaacagctacatgaagagccatatagcatctagc
gactttgaaggtattgtacaggtttgggatgttactaggagccaagtttttgttgaaatg
agggaacatgagaggcgtgtgtggtcggtggacttctcacttgcggacccaacaaaattg
gttagcgggagtgatgatggttcagtgaagctgtggaatatgaatcaggctgggagtgtt
ggcactatcagaacaagagcaaatgtatgctctgtgcagtttcaacctgattctgctcgt
tccattgcaattggatcagcagatcacaaaatttactgctatgatcttcgaaacatacga
gctccttattgtacgttagttggccacacaaaaacagttagctatgttaagtatgtggat
gcatcaactatagtgtccgcatctactgacaactccttgaagctctgggacttgtccatg
agtcaggcaaggataattgacagtccgcttcggacatttacaggtcatacaaacactaag
aattttgttggactttctatatctgatggttacattgctactggctcagagacaaatgag
gtttttgtctaccacaaagcatttccaatgccagtcttggcatataaattcagtgtcaca
gacccaatatcaggccaggagattgacgatccatcacagttcatttcatgcgtgtgttgg
agagggcagtcctcaacgcttctttctgctaattccagcgggaacattaaaatcttagaa
atggactga
Oryza sativa japonica (Japanese rice): 4339663
Help
Entry
4339663 CDS
T01015
Name
(RefSeq) protein SUPPRESSOR OF PHYA-105 1
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4339663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4339663
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Multi subunit type E3 associated proteins
4339663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Pkinase
ANAPC4_WD40
WD40_like
Motif
Other DBs
NCBI-GeneID:
4339663
NCBI-ProteinID:
XP_015639842
UniProt:
A0A0P0WQP1
Q0DFT9
LinkDB
All DBs
Position
5:complement(join(28630792..28630983,28631405..28631464,28631546..28631863,28632482..28632628,28633560..28634412,28634961..28635118,28635787..28637493))
Genome browser
AA seq
1144 aa
AA seq
DB search
MAGTHGFRRVGVVEMEAATAAEVAGAGSGTDGDLQIKGSKENGQTAEQPAASEALEMPST
PLPLPRDIDWSEHFSFFNSVGGFGGSMDGARGLTSVGLSNSESRPDSVTQIQSCLNNADE
RVEELTLKNCISSDAQHEVSAGGSTSSGEKPTVMRGLWGNFTRMSWRASDVANREKLAAN
RGDVANLRVGDMPIRENLAVSFGNNMISRNDASNKEMGMSHGDHANNEFNLPFGNQQPFL
SPRPNQNEQRVERENALIVSSFSARILDQMRSKNVTPSSGVQSFPFKSVLKGKGVVYQGA
REEIQVQGNARTRAPMDKIRKIPNIPQDSMARMDGTIFGSGGNVLEPQCEGTSLRELIKP
ARQTMSKFEKMHFFKQILDLVDKSHAQGFSLQHLRPSYFTISASNQVKYIGSYGTQDLSA
PSKLDIATDDIFNTKRYLDPKVESQDSNGDNASITKYQKVGEQGSIAVRRPVHTFWANHR
GGNQSEGVDPGALWQGNSSCTVRERFKAAEPFYGGSMPYAQRPSSSGNQQSVFELRMLEE
SWYRSPEEISQLKGILPSNIYSLGVLLFELFCCCETWEVHCAAMSDLRHRILPPNFLSES
PKEAGFCLWLLHPDPCSRPKARDILGCDLINEGRDLSLLDNKTPVAVNEEDTESGLLLGF
LSQLKEEKEMHAAKLSADLASLETDIAEVEKRHSMRMGFSLEDMDVLAGSNDLSGASACA
LGGASLSGLPPSLCRSSIYEERVMRNLEQLENAYYSMRSTIDTSEANIIKRVDNDALRVR
QNFHELHSDANAIDEQADPLGWFFDGLCKYARYSRFEVRGILKNADILNSPNVICSLSFD
RDEEYFAAAGVSKKIKIFEFDALLNDRVDIHYPLIEMPSKSKLSCVCWNSYIKNYLASTD
YDGTVQLWDASSGQGFTQFTEHRKRAWSVSFSEVDPTKLASGSDDCCVKVWSINQKNCTD
TIRNVANVCCVQFSPYSSRMLAFGSADYKIYCYDLRNTRIPWCTISGHGKAVSYVRFLDP
ETLISASTDNTLKIWDLNQTNSSGLSTDACSMTLSGHTNEKNFVGLSVHDGYITCGSENN
EVFSYYKTFPMPITSHKFGSIDPITGQETNDDNQQFVSSVCWRGRSNMVVAANSTGSIKV
LELV
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atggcggggacgcatggttttcgtagggtaggcgtggtcgagatggaagcggcgacggcg
gctgaggtggccggtgccggcagcggcacggatggcgatttgcagattaaaggcagcaag
gagaatggtcagactgcggagcagccggcggccagcgaggcgcttgagatgccctccact
ccgctcccgctcccgagggacatagattggtcggagcatttctccttcttcaattcggtg
ggcgggtttgggggcagcatggatggcgcgaggggcttgactagtgttggcctatctaat
tctgagtcgaggccggatagtgtaacccagatccagagctgtttgaacaatgcagacgag
agggttgaggagctcacattgaaaaattgcatcagctccgatgcgcaacatgaggtttca
gctggtggaagcacgagcagcggggagaagcctacagttatgaggggtctgtggggtaat
tttacaaggatgtcatggagagctagcgacgtggctaacagggaaaaattagcagcgaat
cgtggtgacgttgcaaacttgagggtcggtgacatgcccatcagggaaaatttggcggtg
agcttcggcaacaatatgatctcacgaaatgatgcatccaacaaggaaatgggaatgagc
catggggatcatgcgaataacgagttcaatttgccgtttggtaatcagcagccttttctg
tctccacggcctaatcagaatgagcagcgagttgaaagggagaatgctctcatagtgagt
agcttttcagctagaattctggatcagatgaggagtaagaatgtaacaccttcgtctggg
gttcagagcttcccatttaagagtgtgttgaagggtaaaggtgttgtatatcaaggtgca
cgagaggagatccaagttcaaggtaatgcaaggaccagagcccctatggataagattcgc
aagatccctaacataccacaggattccatggctagaatggatggtacaatctttggcagt
ggtggaaatgttttagaaccacagtgcgagggaaccagcctaagggaactaattaagcct
gcacgccaaacaatgagcaagtttgagaaaatgcacttctttaagcagattcttgatctc
gtagacaaatctcatgcccagggttttagtttacagcatttgcgcccatcatactttact
atctcagcctcaaaccaagtaaaatatattggttcttatggtacccaagatttatcagcc
ccaagcaaactggatattgcgacggatgatattttcaatacaaaaagataccttgatccc
aaagttgagtcccaagattctaatggcgataatgcttcaatcacaaagtatcaaaaagtt
ggtgaacaaggatccattgctgtaaggcgaccagtgcataccttttgggctaatcacaga
gggggcaaccaaagtgaaggtgttgatcctggtgctttgtggcagggcaattcgagctgc
actgtccgagaacgttttaaggctgcagaacctttctatggtggcagtatgccctatgct
caacgaccatcaagttctggcaaccaacagtcagtatttgaattgaggatgctggaggaa
agctggtacagaagtccagaagagatcagtcagttgaaaggcatacttccatcaaacatc
tacagccttggggttcttttgtttgagctcttttgctgctgtgaaacatgggaggtacat
tgtgctgcaatgtcagatctccgtcatcgcattttgcccccaaattttctttcagaaagt
cctaaagaagctggtttctgtctttggttactccatccagatccctgttctcggcctaag
gcaagagatattctagggtgtgacttgataaatgagggtcgagatttgtccttgttagat
aataaaacaccagttgctgtcaatgaagaagacaccgaatctggtttgctactgggcttc
ctttctcaactcaaggaagaaaaggagatgcacgctgccaaattgtcagctgatcttgcg
agcttggaaacagatatcgcagaggttgagaaaagacactcaatgaggatgggatttagt
ttagaggacatggatgtactggcaggttctaatgatctctcaggagcttctgcatgtgcc
ctgggaggtgcatcactctcaggtttgccaccatctttgtgcagatcgagcatatatgag
gagcgggtcatgagaaacttggagcagcttgaaaatgcatattactccatgaggtccacc
attgacacatcggaggccaatataattaaacgagttgataatgatgctttaagggttcgt
caaaattttcacgagctgcatagtgatgctaatgctatcgatgagcaagcagaccccctt
ggatggtttttcgatggcttatgcaagtatgcccggtatagtaggtttgaagtacgggga
attctgaagaatgcagatatacttaactcaccaaatgtgatttgttcgttaagttttgat
cgggatgaagaatattttgctgctgctggtgtttcaaagaaaattaaaatatttgaattt
gatgcccttttaaatgatcgtgttgatattcattacccattgatagagatgcctagcaaa
tccaagcttagctgtgtctgttggaacagctacataaaaaattacttggcatcaacagac
tacgatggcactgttcagttgtgggatgcaagctcgggtcaaggattcacgcagtttacg
gagcaccgaaaaagagcttggtctgtaagtttctcagaggtggatccaactaaattggca
agtggaagtgatgattgctgcgtgaaagtttggagtattaaccagaaaaattgcactgat
accatcagaaacgtggccaacgtgtgctgtgtacagttctccccatactcctctcgtatg
ttagcttttggctcggctgattataagatatactgttatgatctgaggaatacaagaatc
ccatggtgtactatttctgggcatggaaaagctgtcagctatgtacgattcttggatcca
gaaacacttatctctgcatcaactgataacaccttgaaaatatgggatctcaaccagact
aattccagtggattatctactgatgcctgcagtatgacgttgagtggccataccaatgag
aagaattttgtggggttatctgttcacgatggatacataacttgtggttctgaaaataat
gaagtattttcttattacaaaacctttcccatgccaataacttctcacaagttcggttca
atcgacccaataactggacaagagacaaatgatgataaccaacaatttgtgtccagtgtt
tgctggcgagggaggtcgaacatggtagtggctgccaattctactggcagcattaaagtg
cttgagcttgtgtga
DBGET
integrated database retrieval system
