KEGG   Oryza sativa japonica (Japanese rice): 4324761
Entry
4324761           CDS       T01015                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03420  Nucleotide excision repair
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4324761
  09124 Replication and repair
   03420 Nucleotide excision repair
    4324761
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    4324761
   03400 DNA repair and recombination proteins [BR:osa03400]
    4324761
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     4324761
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      4324761
SSDB
Motif
Pfam: Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WD40_Gbeta EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WDR55 DSE1_N Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EML NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 WD40_RFWD3 PAC11 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_NOL10_N Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_Nup120_160 Beta-prop_WDR41 Beta-prop_ACSF4 WDR54 Beta-prop_WDR75_2nd Beta-prop_RIG_1st Tricorn_2nd
Other DBs
NCBI-GeneID: 4324761
NCBI-ProteinID: XP_015611780
LinkDB
Position
1:join(37703625..37703777,37703938..37704195,37704310..37704469,37704558..37704738,37704948,37705060..37705351,37705483..37705637,37705714..37705803,37705886..37706077)
AA seq 493 aa
MWCEAVRWREHGELGARRFETAARARRTASLALSNRKEFTTPHNGAINSLQVDLTERRYL
LAGASDGSAAIFDVQNATEYEAGFIAKHRSILLVDKQHENGHKFVVSMAVWYPVDTGLFV
TASFDQYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVHLCDIASG
AFTHTLSGHRDGIMSLEWSTSSEWILMSGGCDGAIRFWDIRRAGCFLVLDQSRSQLGRRP
PFLEGTSDKICPSTLVVQMINVFIFNFDQDPLNSLQPSSSSKIYSAQQRTGKSKKQSHKL
HKSQIPGHGHIQQRLHPGLSSSQNCATAHYGAVTGLRTTTDGMYLLSSGSDSRLRLWDID
SGCNTLVNFEAMRLQTSKPLQLAVTEDPSLVFIPCMASIKAYNLWSGMTFQTFRGHYEPV
NCCYCSAQEQELYTGSNDMQILVWSPSTPAFTEMVYFLFLVIIYLSVEFSYILSNSNFLG
VVGHIRILSHKLF
NT seq 1482 nt   +upstreamnt  +downstreamnt
atgtggtgtgaggcggtgaggtggagggaacacggggagctgggcgcacggcgcttcgag
accgccgcccgggcgcgccgcaccgcctcgctcgcgctctccaaccgcaaggagttcacc
accccgcacaacggcgccatcaactccctccaggttgatttgacagagcggcggtaccta
ctcgctggcgcatcggatggatcagccgctatattcgatgtgcagaatgcaaccgaatac
gaagccgggttcattgccaagcacaggagcattctgcttgtggacaagcagcatgaaaat
ggccacaagttcgtggtatcgatggccgtatggtatcctgtggacactgggctgttcgtg
acagcttcttttgatcagtatgtcaaagtgtgggatactaattcgactcaagtcgtaatg
gattttaagatgcctggaaaagtgtatagcgcagcaatgtccccaattgcaacaacacat
atgctgatcgctactggaagtgcggatgttcaggtccatttatgtgacattgcttctgga
gcctttacccacacgttgtccggtcatcgtgatggtatcatgtctttggagtggtctact
tcaagtgagtggattttgatgagcggtggttgtgatggagcaatacgattttgggacata
agacgagctggatgctttcttgttcttgatcagtcacggtctcaactaggaaggcggcct
ccttttcttgagggcacctcagataagatatgtccttccactctagttgtgcaaatgatc
aatgtattcatttttaattttgaccaggatcctttgaactctttacaaccttcatcttct
tcaaagatttactctgcacagcagaggacaggcaagagtaagaaacagtcacacaaattg
cacaaaagtcaaatccctggacatggacatatccaacagagattgcaccctggtttgtct
tctagtcaaaattgtgcaacggcacattatggtgctgttacaggattaagaacaactaca
gatgggatgtaccttcttagctcaggttctgattctcgcttaagactttgggatattgat
tcaggctgcaatactttggtcaattttgaagctatgcgattacagactagcaaaccgcta
caattagctgtcactgaggatccatcacttgtattcatcccatgcatggcaagcattaag
gcgtacaatttatggtctggtatgacatttcaaacattccgggggcactatgaacctgtt
aattgctgctactgtagtgcacaagaacaagagctttatactggcagcaatgacatgcaa
attcttgtgtggtctccatcaactccagcgtttactgaaatggtatattttctatttctt
gttatcatatatctttctgtagaattttcctatatcctatcaaattcaaatttcttagga
gtagtcgggcatattaggatattatcgcataagcttttttag

KEGG   Oryza sativa japonica (Japanese rice): 4329118
Entry
4329118           CDS       T01015                                 
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
  KO
K10570  DNA excision repair protein ERCC-8
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03420  Nucleotide excision repair
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4329118
  09124 Replication and repair
   03420 Nucleotide excision repair
    4329118
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    4329118
   03400 DNA repair and recombination proteins [BR:osa03400]
    4329118
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     4329118
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      4329118
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I Beta-prop_WDR90_POC16_2nd DSE1_N Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_EIPR1 PAC11 WDR90_beta-prop_4th Beta-prop_SPT8 NBCH_WD40 WD40_RFWD3 Beta-prop_Aladin ANAPC4_WD40 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_NOL10_N Beta-prop_Nup120_160 Beta-prop_WDR41 Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_WDR75_2nd Beta-prop_RIG_1st WDR54 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 4329118
NCBI-ProteinID: XP_015627154
UniProt: Q6Z0X1
LinkDB
Position
2:join(12090148..12090300,12090460..12090717,12090830..12090989,12091078..12091253,12091632..12091869,12092001..12092155,12092230..12092319,12092402..12092473,12092628..12092687)
AA seq 453 aa
MWCEAVRRRERGELGARRFETAARARRTASLALSNRKEFTTPHNGAVNSLQVDLIERRYL
LSGASDGSAAIFDVQNAIEYEAGFIAKHRSILLVDKQHENGHKFAVSMAVWYPVDTGLFV
TASFDQYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVRLCDIASG
AFTHTLSGHRDGIMSLEWSTSSEWILMSGGCDGAIRFWDIRRAGCFLVLDQSRSQLGRRP
PFLEGTSDKDPLNSLQPSSSSKIYSAQQRTGKSKKQSHKLHKSQIPGHGHIQQRLHPGLS
SSQNRATAHYGAVTGLRTTTDGMYLLSSGSDSRLRLWDIDSGCNTLVNFEAMRLQTSKPL
QLAVTEDPSLVFIPCMASIKAYNLWSGMTFQTFRGHYEPVNCCYYSAQEQELYTGSNDRQ
ILVWSPSTPAFTEMEDDGKRQMDFVVDEDNWSD
NT seq 1362 nt   +upstreamnt  +downstreamnt
atgtggtgtgaggcggtgaggcggagggaacgcggggagcttggggcacggcgcttcgag
accgccgcccgggcgcgccgcaccgcctcactcgcactctccaaccgcaaggagttcacc
accccgcacaacggcgccgtcaactctctccaggttgatttgatagagcggcggtacctg
ctctcgggcgcatcggatggatcagccgctatatttgatgtgcagaatgcgatcgaatac
gaagctgggttcattgccaagcataggagcattctccttgtggacaagcagcatgaaaat
ggccacaagttcgcggtatctatggccgtatggtatcctgtggacactgggctgtttgtg
acagcttcttttgatcagtatgtcaaagtgtgggatactaattcgactcaagtcgtaatg
gattttaagatgcctggaaaagtgtacagtgcagcaatgtccccaattgcaacaacacat
atgctgatcgctactggaagtgcagatgttcaggtccgtttatgtgatattgcttctgga
gcctttacccacacgttgtctggtcatcgtgatggtatcatgtctttggagtggtctact
tcaagtgagtggattttgatgagcggtggttgtgatggagcaatacgattttgggacata
agacgagctggatgctttcttgttcttgatcaatcacggtctcaactaggaaggcggcct
ccttttcttgagggcacctcagataaggatcctttgaactctttacaaccttcatcttct
tcaaagatttactctgcacagcagaggacaggcaagagtaagaaacagtcacacaaattg
cacaaaagtcaaatccctggacatggacatatccaacagagattgcaccctggtttgtct
tctagtcaaaatcgtgcaacggcgcattatggtgctgttacgggattaagaacaactaca
gatgggatgtaccttcttagctcaggttctgattctcgcttaagactttgggatattgat
tcaggctgtaatactttggtcaattttgaagctatgcgattacagactagcaaaccacta
caattagctgtcactgaggatccatcacttgtattcatcccatgcatggcaagcattaag
gcgtacaatttatggtctggtatgacatttcaaacattccgtgggcactatgaacctgtt
aattgctgctactatagtgcacaagaacaagagctttatactggcagcaatgacaggcaa
attcttgtgtggtctccatcaactccagcatttactgaaatggaagatgatggcaagagg
caaatggattttgtagtcgatgaggataactggagcgactga

DBGET integrated database retrieval system