KEGG   Oryza sativa japonica (Japanese rice): 4324917
Entry
4324917           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K03681  exosome complex component RRP40
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4324917
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4324917
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     4324917
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N RRP40_N_mamm S1_RRP4
Other DBs
NCBI-GeneID: 4324917
NCBI-ProteinID: XP_015621111
UniProt: Q5JLX2 A0A8J8XN08
LinkDB
Position
1:complement(join(39386410..39386529,39386615..39386705,39386781..39386856,39387086..39387158,39387714..39387806,39388053..39388109,39388632..39388718,39388826..39388900,39389005..39389052))
AA seq 239 aa
MESRKPPPSALVDNHVVPGDVVLDLTEMTNQTIKLGAGLRQDCDTIQATSAGRLRLSKPN
KYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFE
IGTLIYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRMLLSSPTCPVL
EALGKKLSFEIAVGLNGRVWVNAPSPSNVIVVSNAIIKSESLSGIGQRSMVESLLERLS
NT seq 720 nt   +upstreamnt  +downstreamnt
atggaatcgaggaagccgccaccctctgccctcgttgacaaccacgtggtccccggagac
gtcgtcctcgacctcaccgagatgaccaaccagaccatcaagctcggcgctggcctgcga
caggattgcgacaccatacaggctaccagtgctgggaggctacggctttcgaagcccaac
aaatattgggtcgagagctcgcagaagaggtatataccttctgtagaagatacagttctt
ggtgttgtggttgacaccaaaccagataacttcttggtggatataaaaggtcctaatttg
gcctttttaccagttcttgcatttgaaggtggtaccaggagaaatattccaaagttcgag
attggtacattaatatatgcacgagtggtgaaagcaaatagcatcatgaacccagagctc
tcgtgcatggatgctactgggaaagcagccgaatttggtcaactaaaagatggctatatg
tttgacacgtctactggcttgtcgcggatgttgttaagttctccaacatgtccagttcta
gaggcccttggaaaaaaactttcatttgagattgctgttggcctgaatggccgagtctgg
gttaatgcaccttctccaagtaatgtcattgttgtatcaaatgcgattataaaatcagaa
tctttgagtggcatagggcaacgaagtatggtggaaagtctcttggagagactatcttga

KEGG   Oryza sativa japonica (Japanese rice): 4327851
Entry
4327851           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K03681  exosome complex component RRP40
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4327851
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4327851
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     4327851
SSDB
Motif
Pfam: RRP40_S1 KH_6 Rrp40_N RRP40_N_mamm S1_RRP4
Other DBs
NCBI-GeneID: 4327851
NCBI-ProteinID: XP_015621208
UniProt: Q0JKN6 A0A0P0V6C1
LinkDB
Position
1:join(27586943..27586990,27587085..27587159,27587268..27587354,27587868..27587924,27588169..27588261,27588830..27588902,27589132..27589207,27589283..27589373,27589461..27589580)
AA seq 239 aa
MESRKPPPSALVDNHVVPGDVVLDLAEMTNQTIKLGAGLRQDCDTIQATSAGRLRLSKPS
KYWVESSQKRYIPSVEDTVLGVVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFE
IGTLIYARVVKANSIMNPELSCMDATGKAAEFGQLKDGYMFDTSTGLSRMLLSSPTCPIL
EALGKKLSFEIAVGLNGRVWVNAPSPSNVIVVSNAIIKSESLSGIGQRSMVESLLERLS
NT seq 720 nt   +upstreamnt  +downstreamnt
atggaatcgaggaagccgccgccctccgccctcgtcgacaaccacgtggtccccggggac
gtcgtcctcgacctcgccgagatgaccaaccagaccatcaagctcggcgccggcctgcga
caggattgcgacaccatacaggctaccagtgctgggaggctacggctttcgaagcccagc
aaatactgggtcgagagctcgcagaagaggtatataccttctgtagaagatacagttctt
ggtgttgtggttgacaccaaaccagataacttcttggtggatataaaaggtcctaatttg
gcctttttaccagttcttgcatttgaaggtggtaccaggagaaatattccaaagttcgag
attggtacattaatatatgcacgagtggtgaaagcaaatagcatcatgaacccagagctc
tcgtgcatggatgctactgggaaagcagccgaatttggtcaactaaaagatggctatatg
tttgacacgtctactggcctgtcgcggatgttgttaagttctccaacatgtccaattcta
gaggcccttggaaaaaaactttcatttgagattgctgttggcctgaatggccgagtgtgg
gttaatgcaccttctccaagtaatgtcattgttgtatcaaatgcgattataaaatcagaa
tctttgagtggcatagggcaacgaagtatggtggaaagtctcttggagagactatcttga

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