Oryza sativa japonica (Japanese rice): 4325055
Help
Entry
4325055 CDS
T01015
Name
(RefSeq) transcription initiation factor TFIID subunit 12 isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4325055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4325055
03036 Chromosome and associated proteins [BR:
osa03036
]
4325055
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
4325055
Coactivators
SAGA/TFTC/STAGA complex
4325055
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
4325055
STAGA complex
4325055
TFTC complex
4325055
SAGA complex
4325055
SLIK complex
4325055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Cwf_Cwc_15
WD40_2
MDM10
Motif
Other DBs
NCBI-GeneID:
4325055
NCBI-ProteinID:
XP_015621479
LinkDB
All DBs
Position
1:complement(join(37745665..37745772,37746006..37746041,37746145..37746209,37746321..37746399,37746678..37746752,37747334..37747912,37748224..37748388,37749454..37749975))
Genome browser
AA seq
542 aa
AA seq
DB search
MDAPPPAQPDAAAAAPAAPPTSTSASAPSSAPQPNPTPSASTAAPPTPDTTLAPAPNPTP
APVQTLETPAPSPASARPPVPRMRPPYTHLASPITMSSSPATGAASSSSASAPAATSASS
SAMPRGGVALGLPAHPRAPQTPVGYTGFVPPPTLAAQFGSMHRGPDQPPPSSTQPRQPSP
GIQNIGTVGSINTSQVRPGAISSLPQQTRPNFPSSTAPSPSDSQIASSQKTPIQALARPP
SMASSPSMPLQQTPPNVSAPLRPPQHRPHPRPYHAPAISHPQNALLTQQQQKLPQHQHLQ
QQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQNQPQHSSQQSQQTTTLRN
QQQISQQQTARTPVSMAQKLDSPAVLKATNVQSGDMASVDVDAGGSGNRLLSKRSIHELV
AQIDPSEKLDPEVEDVLIDIAEDFVESVATFACSLAKHRKSSILEAKDVLLHAERSWNIT
LPGFSGDEIKLYKKPHVNDIHRERLTLIKKSMASESNAKGSAAQAAANQKNQTPKPPATG
SP
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgcctccgcccgcgcaaccggacgccgccgcggcggcgccggcggcgccgccc
acttcgacctcggcttctgccccctcatccgcgccacagcctaatcccaccccttccgcc
tccaccgccgcgccgcccacccccgacaccacccttgccccggcccccaatcccacccca
gcccccgtccaaaccctagaaaccccagctccaagccccgccagtgcgcggccgccggtg
ccccgcatgaggcctccgtacactcacctggcctcgcccatcacgatgtcctcctctccg
gccacgggcgcggcctcttcctcctctgcttccgctccggccgccacctctgcgtcctca
tctgccatgccacggggaggtgtagcccttgggctaccagcgcacccgcgtgcgccgcag
acgcccgtcggctacaccgggttcgtgccgccgccgacactcgccgcgcagttcggctcg
atgcatcggggtcctgaccagcccccaccatcctctacacagcctaggcagccttcccct
gggatccaaaatattgggacagttggttccattaacacatctcaggtgagaccaggagca
atctctagtctgccacagcagacaaggccaaattttccatcttcaacagcaccatctcca
tctgatagccagattgcaagttcacaaaaaacccccatccaagctttggcaagaccacca
tctatggcttcttccccctcgatgcctttacagcaaactccgccaaatgtatctgctcca
cttaggccccctcaacataggccacatccaagaccataccatgctcctgcaatttcgcac
ccacagaatgcacttttaacacagcagcagcaaaaactaccacaacatcaacatttgcag
caacagcagcagcagcagcagcagcaacaaaaactacagcaacagcagcagcagcagcaa
caaaaactacagcagcagcagcagcagcagcaacaaaagctacagcagcagcagcagcaa
caacaaaatcagccacaacattcctcgcagcaaagtcaacagactacaacactcagaaac
cagcaacaaatttctcagcagcaaactgctcgtacccctgtctcaatggctcagaagcta
gattctcctgctgtactaaaagctactaatgtgcaatctggagacatggcttcagtcgat
gtggatgctggaggatctggtaatcgactgctttccaagaggagtatacatgaattagtt
gcacagattgatccttcagaaaagcttgatcctgaagttgaagatgttcttattgacatt
gcagaagattttgttgaatctgttgcaacatttgcttgttctttagcaaaacatagaaag
tcaagcattttagaagcaaaagatgtactcctccatgcagagagaagctggaatattacc
ttgccaggcttcagtggagatgaaataaaactgtacaagaagccgcatgtcaatgatatt
cacagggagaggcttactctgatcaagaagtcaatggccagcgaaagtaacgcaaagggc
tctgctgcgcaagctgcagctaaccagaaaaatcagacacccaagccacctgccacaggc
tctccatga
Oryza sativa japonica (Japanese rice): 4327470
Help
Entry
4327470 CDS
T01015
Name
(RefSeq) transcription initiation factor TFIID subunit 12b isoform X1
KO
K03126
transcription initiation factor TFIID subunit 12
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4327470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4327470
03036 Chromosome and associated proteins [BR:
osa03036
]
4327470
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
4327470
Coactivators
SAGA/TFTC/STAGA complex
4327470
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
4327470
STAGA complex
4327470
TFTC complex
4327470
SAGA complex
4327470
SLIK complex
4327470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIID_20kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
4327470
NCBI-ProteinID:
XP_015618211
LinkDB
All DBs
Position
1:complement(join(37011652..37011825,37012311..37012375,37012450..37012528,37012710..37012784,37013022..37013525,37013962..37014162,37014949..37015482))
Genome browser
AA seq
543 aa
AA seq
DB search
MADPPSAAATASPQPDQLAAAAVSTPQNPNPNPLLSPQIPPSPTVSDLSAISSPQLDPSA
AGGGAMDYPPRPPQMQAPSPGQAAAGAGGFGQIHRSGSGSRLAAVGQLPQYAAAAARMYG
SQVNFSGGGGQVGQQQQQQQQLAARAAMLSQGQIGMLQGQGNAASAAHYGLQSQMMAQPR
QKGMVQGAQFNTANAAQALQGMQSMGVMGGMRGNGTIPYNQQRFAHAQAQLRPQQTSQQG
TLSPQKVVGQGLTRTASIAALNPQLPGSSTNGPMAQMSLPQKQQQAAWLKQMQSSLGSPV
SPQQFQHQQRMLLIHQLQQQSGLNQHQIAQTQQQHPHLNTQLLQQQHILQQLQQQQQSPR
ISASGSQKSMNLTGSQPGTPLSGGTMTGGSASQGAEVTNQLLGKRKIQDLVSQVDPLGKV
DPEVEDLLLEIADDFIDSVTAFACTLAKHRKSSVLEAKDVLLHLEKNWHLSVPGFLREDK
NPQRHPVKVSVDPQQPECDAAGIRSTGNKLVINNSVANHQTRPPVTEPSPMPTMGPLSKV
PRF
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggcggatccgccgtccgcggccgccaccgcctcgccgcagcccgatcagctcgccgcc
gccgccgtctccaccccgcaaaaccccaaccctaaccccctcctctccccccaaatccca
ccgtcgcccaccgtctccgacctgtccgccatctcgtccccgcagctcgacccgtccgcg
gcgggcggcggggccatggactaccccccgcggccgccgcagatgcaggctccttcgccc
ggccaggcggcggccggggctggaggcttcggccagatccaccgctcgggctcgggctcc
cgcctcgccgctgtcggccagcttccacagtacgctgctgctgcggccaggatgtacggc
agtcaggtgaacttctcgggaggtggaggacaggtgggacaacagcagcagcagcagcag
cagctggctgctcgcgcggccatgcttagtcaaggccagattgggatgctgcaagggcag
gggaacgcagcatctgcggcgcactatggtctccagtcacagatgatggcgcagccaagg
cagaagggtatggtgcaaggtgcacaatttaatactgccaatgcagctcaagcattacaa
ggtatgcagtccatgggagtcatgggtggtatgagaggaaatggaactattccatataat
cagcaacgttttgcccatgcacaagcacaattgaggccgcagcagacatcacagcaaggc
acactgtctccacagaaggttgtgggtcaaggcttgacaagaacagcatcgattgctgca
ttaaatccacagctacctggatcgtcgacaaatgggccgatggcacaaatgtcccttcct
cagaaacagcagcaggcagcatggttaaaacaaatgcaatcatcgctgggatcacctgtt
tctccacaacaatttcagcatcaacaaaggatgctattaatacatcaacttcaacagcag
tcaggattgaatcaacaccaaatcgcacaaacccaacaacagcatcctcatctcaatacc
cagcttttacagcagcaacacattctacagcaacttcagcaacaacaacaatctccaagg
atatcagcatctggttcccagaagtccatgaacctgacaggatcacaaccgggcactcct
ttatcaggtggaactatgactggtggaagtgcaagtcaaggagcagaagtaactaatcaa
cttcttgggaagagaaaaatacaagatttggtttcacaggtagatcccctgggcaaggtt
gatccagaagtggaagatttgcttttggagattgctgatgacttcattgattcggtgact
gcatttgcgtgtacccttgcgaagcataggaaatcatcagtcctggaagccaaggatgta
ttgctgcacctagaaaaaaattggcacttatctgttcctggtttcttaagggaggacaag
aatccgcaaagacatcctgtaaaggtatcagtggaccctcaacaaccagaatgtgatgct
gctggtattagaagcacaggaaataaattggtaattaacaattcagttgccaaccatcaa
acaagacctccggttactgagccttcaccaatgcccacaatggggcctctgtcaaaagtg
ccccgtttctaa
DBGET
integrated database retrieval system
