KEGG   Oryza sativa japonica (Japanese rice): 4325502
Entry
4325502           CDS       T01015                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4325502
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4325502
   03012 Translation factors [BR:osa03012]
    4325502
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4325502
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     4325502
Translation factors [BR:osa03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    4325502
SSDB
Motif
Pfam: Helicase_C R3H HA2_C DEAD OB_NTP_bind WHD_HA2 nSTAND3 AAA_19 Ank_2 ATPase AAA_22 Ank_5 RNA_hel_CTD ResIII AAA_23 Rad17 AAA_7 AAA_11 AAA_25 ABC_tran PhoH
Other DBs
NCBI-GeneID: 4325502
NCBI-ProteinID: XP_015611956
LinkDB
Position
1:join(32955596..32956034,32957225..32957315,32957480..32957789,32957919..32957993,32958366..32958410,32958785..32958875,32958956..32959014,32959517..32959678,32960481..32960533,32960620..32960653,32961062..32961151,32961230..32962231,32962373..32962931,32963769..32964268,32964689..32965096)
AA seq 1305 aa
MAHTSGVAARLNLVFMGRPLARSAQPPPSGPRFSGRAQRRRGSNEATACGKGRSRAGRAA
SPDVVATKPPPLHDEEEEEGGRMVRRGRKGKDAAAGAGGTGGRGGGAGRGGGRGGSGGGG
GGGGVREATLVRVSKVLEDFQASDAQVYKFEPGISKQERAAIHEMCRKMGMISKSSGNGE
RRCLSVYKRKQNQGLETEEGPSHLGFSVEARNVLQDLFMHYPPDDAELNGHTVRNSSDKA
VKIQWKPDGAFCRPALRKPDILKKVEMLASKVNKSEQLRKIVQDRSKLPISSYKDAISST
LENHQVVLISGETGCGKTTQVPQYILDHMWGKGESCKIVCTQPRRISAISVAERISAERG
ESVGDTVGYKIRLESKGGKNSSIMFCTNGVLLRLLIGRVTNISKEQNQKRSFDDAVTGIT
HIIVDEIHERDRFSDFMLAILRDLLPLYPHLRLVLMSATIDAERFSNYFSGCPFIQVPGF
THPVKTFYLEDVLSILQSVGDNHLDPTTDDLKQSSLLTDDYKSSMDEAINLALDNDEFDP
LLELISAEQNQEIFNYQHSETGVTPLMVLAGKGQVGDICMLLSFGVDCSTRDHDGKSALG
WAEQGNQQEVCEVIKKHMECGSAKLTEENELLNKYLATINPEHIDTVLIERLLRKICVDS
NEGAILVFLPGWEDINQTRERLLASPFFQDSSKFLVLSLHSMIPSSEQKKVFKRPPAGSR
KIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHSSWVSKANARQRQGRAGR
CQPGTCYHLYSRFRAASLLEYQIPEIKRMPIEELCLQVKLLDPNCRIADFLRKTLDPPIP
ETVRNAITVLQDLGALTQDEQLTELGEKLGSLPVHPSTSKMLLFGILMNCLDPALTLACA
ADYRDPFLLPMAPDERKRAAAAKVELASLYGGYSDQLAVVAAMDCWRRAKDRGQEAQFCS
KYFVSSNTMNMLSNMRKQLQNELAQRGFVPVDASACSLNARDPGIIRAVLMAGAYPMVGR
LLPPRKNTRRAVIETASGAKVRLHPHSCNFNLSFRKTSGNPLVIYDEITRGDGGMYIKNS
SVVGSYPLIILATEMVVAPPEDDDSDEEDGDSSEDETEKVTLGQHKEIMSSPDNSVSVVI
DRWLRFDATALDVAQIYCLRERLASAILFKVKHPQDVLPPDLGATMYAIACILSYDGLPA
MITSDDVATSQGSNQSSAESSRFSQGRRVGYIPPGGFLMSLLSDKPLNAPHFQKSFNHPD
GASGHIRSSRTSVGRFDQSRHPQRNNSGPGSSAARTFKRQRNGAQ
NT seq 3918 nt   +upstreamnt  +downstreamnt
atggcccacacgtcaggcgtggccgcccgtctgaacctggttttcatgggccgcccgctc
gcacgcagcgcgcagccaccgccatctgggcctaggttttccgggagagcgcagcggcgg
cgcggaagcaacgaagcgaccgcttgcgggaagggccggagccgagccggccgcgccgcc
tcgcccgacgtcgtagcaaccaagccacccccgctccacgacgaggaggaggaggaggga
ggaaggatggtgaggagagggcggaagggcaaggacgcggcggctggcgccggcggcacc
ggtggcagaggcggcggtgccggcagaggaggcggcagaggaggaagcggcggcgggggc
gggggagggggtgttcgggaggcgacgctggtgcgcgtctcgaaagtgctcgaggacttc
caagcctccgacgcccaggtgtacaaatttgaacctggcatatcgaaacaagagcgagcg
gcgatacatgagatgtgtagaaaaatgggcatgatatccaaaagttctgggaatggggaa
cgacgatgcctatctgtttacaaaagaaaacagaaccagggccttgaaacagaagaagga
cctagccatcttggattttctgtggaagcgagaaatgttttgcaagatctatttatgcat
tatcccccagatgatgcggagctaaatgggcatactgtcaggaattctagtgataaggct
gtaaagattcagtggaagccagatggtgcattttgtaggccagcattgcgcaaaccggat
atattgaagaaggtggagatgcttgcatcgaaagtaaataaatccgaacagttgaggaag
attgtccaagatagatctaaacttccaatttcctcatacaaggatgcaatttcttcgact
ttagagaatcaccaggtggttcttatttctggagaaacaggatgtggtaaaacaacacag
gttcctcaatatatcttggatcatatgtggggtaagggtgaatcatgtaagattgtatgc
actcaaccaaggcgaatatcagctatctcagttgctgagagaatctctgcggaaagagga
gagtctgtgggtgacacagttgggtataagatacgcttggagtcaaaaggagggaagaac
tcatcaatcatgttctgcacaaatggtgttcttttgaggctattgataggcagggtaact
aatatttcaaaagaacaaaatcagaaacgctcatttgatgatgcagttactgggataaca
catattattgtggatgaaatccatgaaagggacaggttttcagatttcatgttggctatt
ctaagagatttgctgccgttgtatcctcatctgcgtttggtactcatgagtgcaacgatt
gatgctgagcggttctcaaattatttcagtggatgcccatttattcaagtcccagggttt
acccatcctgtcaaaactttctatttggaggatgtgctttctattttgcaatctgtaggc
gataatcatcttgatcctacaacagatgatctgaaacagagcagtttgttaacagatgat
tacaaaagctcaatggatgaagccattaacctagctttggataatgatgaatttgatcct
cttcttgagcttatttctgctgagcagaaccaagaaattttcaattaccagcactcagaa
actggtgtgacacctttgatggttcttgctggaaaaggtcaggttggggacatttgcatg
cttctatcatttggggtggattgttctacacgggatcatgatggaaaatctgcattaggt
tgggcagaacaagggaatcagcaagaggtttgcgaagttattaagaaacatatggaatgt
ggttcagcaaagttaactgaagagaatgagctgctcaataaatacttggcaaccatcaat
cctgagcacatcgatactgtgctaatagaacggttgctcagaaaaatttgtgttgattcc
aatgaaggagctatcttggtgtttcttcctgggtgggaagatataaatcaaacacgggaa
aggttgcttgcttctcccttctttcaggattcgtcaaagtttcttgtgttgtcactccat
tccatgatcccatcttcggagcagaaaaaagttttcaagcgtccaccagcaggatctcgt
aaaataattctctcaaccaacatagcagagactgctgtgacaattgatgacgtcgtattt
gtcatagatagtgggagaatgaaagagaaaagttatgatccatataataatgtctcaaca
cttcattcttcctgggtttcaaaagctaatgccagacaacgtcaagggcgtgcgggtcgt
tgtcagccaggaacgtgctaccatctctactctagatttcgagcagcctcattactggaa
taccaaatccctgaaataaagaggatgcctattgaggaactatgtttacaggtcaaactg
cttgatccgaactgcagaattgcagactttttaaggaaaactttggaccctccaattcca
gaaactgtaagaaatgctatcaccgtacttcaggatcttggtgctttgactcaagatgaa
caactgacagagttaggggaaaagttgggctcccttccggtccatccatctacaagcaag
atgctcttgtttggtatattaatgaattgcctagatccggcgttgacattggcatgtgca
gcagattatagagatcctttcctccttccaatggctccagatgagaggaaaagggctgct
gcagccaaagttgagcttgcttcattgtatggtggatacagtgatcagcttgcagttgta
gcagcaatggactgttggagacgtgccaaagataggggccaagaagctcaattttgttct
aagtattttgtgtcttctaacaccatgaatatgctttcaaacatgaggaaacagcttcag
aatgaactagcccaaagaggatttgttcctgtagatgcatctgcatgcagcttaaatgct
agagatccaggtatcattcgtgctgtccttatggccggtgcttatccaatggtagggaga
ttgcttccccctcgcaaaaatactagaagagcagtcattgaaacagcaagtggtgccaaa
gttcgactgcatccacattcttgcaactttaacttgtctttccgtaagacttctgggaac
ccattagtgatatatgatgagatcactcgaggcgatggtggaatgtacataaaaaactct
tcggttgttgggtcctatcctttaattattcttgctacggaaatggttgttgctccacct
gaggacgatgatagtgatgaagaggatggggattctagtgaggatgaaactgagaaagtc
actttgggacaacataaagagataatgtcttctcctgataactctgtttcagttgttatt
gatcgatggcttcggtttgatgctacagctcttgatgttgctcaaatatactgccttagg
gagcgcctagcatcagctattcttttcaaagtcaaacatccacaggatgtcctcccacct
gatcttggagcaactatgtatgctattgcgtgcatcctatcatacgatggcttgcctgct
atgattacatctgatgatgttgctacaagtcagggttcaaaccaaagttcagctgaatca
agcagattctctcagggtcgtagagtcggttatattccacctggcggtttcctcatgtct
ttgttatcggataaacctcttaatgcgcctcattttcagaagtcctttaatcatccagat
ggagcttcagggcatattcggtcatcgaggacctccgtcggtagatttgatcagtctcgc
catcctcaacgtaataattctggacctgggagttcagcagcacggactttcaaaagacag
cgcaacggtgcacagtga

KEGG   Oryza sativa japonica (Japanese rice): 4326075
Entry
4326075           CDS       T01015                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4326075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4326075
   03012 Translation factors [BR:osa03012]
    4326075
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4326075
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     4326075
Translation factors [BR:osa03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    4326075
SSDB
Motif
Pfam: DEXH1_3_5_N RNA_hel_CTD OB_NTP_bind HA2_C Helicase_C DEAD dsrm WHD_HA2 AAA_22 nSTAND3 AAA_19 T2SSE AAA_16 ATPase PhoH nSTAND_NTPase5 AAA_30
Other DBs
NCBI-GeneID: 4326075
NCBI-ProteinID: XP_015643188
LinkDB
Position
1:join(1027331..1027834,1028554..1028708,1028788..1028875,1028979..1029224,1029852..1029947,1030785..1030973,1031318..1031477,1031580..1031710,1032470..1032637,1032718..1032990,1033497..1033691,1033862..1034065,1034152..1034221,1034325..1034473,1034691..1034999,1035309..1035368,1035479..1035631,1035709..1035819,1036383..1036865)
AA seq 1247 aa
MLLASCLRGRLRLHRRPRPLIMPSPLFLSRNPNPSPPRSATATGTTILSPPSTSASASMS
TSGVYVPPMRRLRSVIASTNGSLAPPPSAAAQAQPVRAPEWRADGRSLSPPPSPPRPPRR
ATPPPPRQPPPQPEPFRQRSAGYARYAYDDFSEDDSDREMDRTSVSSRGGSTLDNIDEWK
WKLHMLLRNEDEQEVISRERKDRRDFEQLSQLAERMGLYSRQYSRIVVFSKVPLPNYRSD
LDDKRPQREVSIPSGLQREVDALLSDYLARKRTSSGSFPNAAFSRSSSTDSFATDESFLE
QQDNQTSTSAVIERIQRRKSLQLRNQQESWQESHDGQSMMEFRRSLPAYKERQTLLEAIA
QNQVVVVSGETGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAIAVSERVAAERG
EKIGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNED
FLLIVLKDLLPRRPELRLVLMSATLNAELFSSYFGGAPMIHIPGFTYPVRSRFLEDILEI
TGHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDTVQAADLRDYSARTRDSLSC
WNPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPSKVLLLA
CHGSMASSEQKLIFDRPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNT
PCLLPTWISKASARQRRGRAGRVQPGECYHLYPQCVYEAFADYQLPELLRTPLQSLCLQI
KSLRLGSISEFLSRALQSPESLSVENAIEYLKVIGAFDRNEELTILGKHLSMLPVEPKLG
KMLIFGAIFNCLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAY
EGWREAERDRNGYDYCWKNFLSVQTLKAIDSLRRQFLFLLRDTGLVDENMTACNKWSRDE
NLVRAVICAGLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKETKIPFPWLVFNEKV
KVNSVFLRDSTAISDSILLLFGGNIKQGGLDGHLKMLGGYLEFFMSRDLASTYLSLKSEL
DNLIHCKLQNPRMDIQTSEELLSAIRLLVTEDPCNGRFVYGRQEQRSKKAKTMFSAAPMS
HGGGGNGGDNAKNQLQTLLTRAGHDNPSYKTKQIKNSLFRSTVEFNGMQFVGQPCANKKL
AEKDAAGEALNWLTGGAPSDSRDPQDMDHMSMLQKPPRRKRHHHRRG
NT seq 3744 nt   +upstreamnt  +downstreamnt
atgctcctggcctcctgcctccggggtcgcctccgcctccaccgccggcctcgcccgctg
atcatgccctccccgctcttcctctcccggaaccctaatccttctcccccacgcagcgcc
actgccactggcaccaccatcctctccccgccctccacctccgcctccgcctccatgagc
acgagcggggtctacgtcccgccgatgcggcgcctccgctccgtcatcgcgtccaccaac
ggcagcctcgctccgccgccgtccgcggccgcgcaggctcagccggtgcgcgcgcccgag
tggcgggcggacgggcgctcgctcagccccccgccgtccccgcctcgaccgccccggcgc
gcgacgcctccccctccacggcagcctcctcctcagccagagcctttccggcagcggagc
gccgggtacgcccggtacgcctacgacgatttctctgaggatgactcggatcgggagatg
gaccgcacctccgtctcgagtaggggtggatccactttagataatattgatgaatggaaa
tggaaactgcacatgcttcttcgtaacgaagatgagcaagaggttatctctagggaaaga
aaggacagacgtgattttgaacaactttcccaactggccgaacgaatgggtttgtacagc
cgtcagtattctaggattgttgtgtttagtaaggttccattgcctaattatagatcagac
cttgatgacaaaagaccacaaagagaggtgtctattccttctggattgcaaagagaagtt
gatgctttgctttcagattatcttgcacggaagagaacaagcagtgggagctttcctaat
gccgctttctcaaggtcaagtagcacagacagttttgcaactgacgaaagcttcttggag
cagcaagataatcagacttcaaccagtgctgtgatagagagaatacaaagaagaaaaagc
ctacagttgcgtaatcaacaggaatcatggcaggaatcacatgatggccaaagcatgatg
gaatttcgtcgcagtcttcctgcttataaagaaaggcaaacattattggaagctatagct
cagaatcaggttgttgtagtttcaggtgaaacaggatgtggtaagacaacacagctacct
cagtacattttagagtctgaaatagatgctgctcgtggtgccacttgcagtattatttgt
actcaaccaagacgaatatcagccatagctgtttctgaaagagttgctgctgaaagaggg
gaaaaaattggtgaatcggttggctacaaagttcggttggaaggaatgaaaggacgggac
acacgccttcttttctgtactactggagttctgttgcggagattgctggtggatagaaat
ttgaaaggtgttacccatgttattgttgatgaaatccatgagcgtggcatgaatgaagat
tttcttcttattgtcctgaaggaccttcttccacgccggcctgagctaagacttgttttg
atgagtgcaacccttaacgctgagttattctcttcatactttggtggagctcccatgata
catatacctggtttcacttatcctgttcggagtcgatttctagaagatattctcgaaatt
actgggcacagattaactccttacaatcaaattgatgactatggtcaagagaaaagttgg
aagatgcaaaagcaagctctaaggaagaggaagagccaaattgcttcggttgtagaagat
acagttcaagctgctgatttaagggactacagtgcacgaactcgtgactcactatcctgt
tggaatcctgattcgattggttttaacttgatagaaaatgtcttatgccatatatgccaa
aaggaaagagctggcgcagttcttgtatttatgactgggtgggatgacatcaatgcactg
aaagagcagctgcaagcaaacccattgcttggagaccctagtaaagttttactgcttgca
tgtcatggttcaatggctagctcagagcagaaactaatatttgatagacctgagcctggt
gtaaggaaaattgttcttgcaaccaatttggctgaaacaagtattactatcaatgatgta
gtttttgtggttgattgtggcaaagcaaaagagacatcttatgatgcattgaacaacact
ccatgtttgcttccaacctggatctccaaggcttctgccagacagagacgaggaagagct
ggtcgagtccaaccaggggagtgttaccatctatatccacaatgcgtgtatgaagcattt
gctgactatcagttgccagaactcctgagaactcctctgcaatccctctgtttgcaaata
aaaagcttgcgccttgggagcatctctgaatttttatccagagctttgcaatcacctgag
tctctatcggtagaaaatgccattgaatatctcaaagtcattggagcgtttgatcgtaat
gaagagttaacaattctaggaaagcacttatccatgcttccagttgagcctaaattgggg
aagatgctgatttttggtgctatttttaattgccttgatcccatattaaccattgtttcg
ggacttagtgtgagagatccattcttgactccatttgacaagaaggatcttgcagagtct
gctaaattgcagttttcatgccgggactatagcgatcaccttgcacttgttcgtgcatac
gaaggatggagagaggctgaaagagatcgcaatggctatgactactgctggaaaaatttt
ctatccgtgcaaaccttgaaagccatagattcccttcggagacaatttctctttcttctc
agggatactgggttggttgatgaaaacatgactgcgtgcaataaatggagccgtgatgaa
aatctagttcgggcggtcatttgtgcaggattatatccaggtgtttcctctgttgtgaac
aaggagaaatcaatttctctcaagacaatggaggatgggcaagtcatgctttactcgagt
tcagtcaatggaaaagaaaccaagattcccttcccctggctggtgttcaatgagaaggtg
aaggtgaattctgtttttctccgggactcaacggctatatctgattctatactgttactc
tttggaggcaacataaaacaagggggcttggatggacatttgaaaatgcttggaggatat
cttgagttcttcatgagtcgtgatcttgcatcaacttacttgagtctcaagagtgaactt
gataatttaatccattgcaagctccaaaacccgaggatggacatccaaaccagtgaagag
cttctgtcagcgattagactgcttgtcactgaggatccatgcaacggtcgtttcgtatat
ggtcgacaagagcaaagatcaaagaaagcaaagacaatgttctctgcagcccccatgagc
catggtggtggtggaaatggaggagacaatgctaagaaccagctccagacccttctcact
agggctgggcatgataacccatcctacaagacgaagcaaatcaagaacagcctcttcagg
tcgaccgtggagttcaatgggatgcagtttgtagggcagccgtgtgccaacaagaagctt
gcggagaaggatgctgcaggagaggcactgaactggctgacaggaggagctccctccgac
tcaagagatccccaagacatggatcacatgtccatgcttcagaaaccaccacgcaggaag
aggcatcatcataggaggggttga

KEGG   Oryza sativa japonica (Japanese rice): 4334111
Entry
4334111           CDS       T01015                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4334111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4334111
   03012 Translation factors [BR:osa03012]
    4334111
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4334111
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     4334111
Translation factors [BR:osa03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    4334111
SSDB
Motif
Pfam: DEXH1_3_5_N RNA_hel_CTD OB_NTP_bind HA2_C Helicase_C WHD_HA2 DEAD dsrm AAA_22 nSTAND3 ATPase T2SSE AAA_19 ABC_tran AAA_23 NACHT ATPase_2 nSTAND_NTPase5 Myosin_head
Other DBs
NCBI-GeneID: 4334111
NCBI-ProteinID: XP_015630592
UniProt: A0A0P0W309
LinkDB
Position
3:complement(join(31698707..31699195,31699629..31699739,31699832..31699984,31700153..31700212,31700299..31700607,31700766..31700914,31701006..31701075,31701176..31701379,31701982..31702176,31702391..31702663,31702756..31702926,31703009..31703139,31703229..31703388,31703518..31703706,31703829..31703924,31704187..31704417,31704521..31704608,31704709..31704863,31704966..31705184))
AA seq 1150 aa
MRGGLRRGLGILLLPLSSSPSRAPRPPVPLAALLVYHRRLDVFARRSFCSSGGGYAVEQF
SDDEYDHEYEDHRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKR
MGLYSEMYGKVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPD
KCGTGNGSEMAEKAENVNLDEQQDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGVKML
EFRKSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNIIC
TQPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSDRN
LNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGAPTI
HIPGFTYPVRAHFLEDILERTGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVE
DALKTSSFETYGSRTRDSLSNWNPDCIGFNLIEAVLCHICRKERSGAVLVFMTGWDDISC
LKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKPPPNVRKIVLATNMAEASITIND
IVFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDA
FADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPAPLAVQNAVEFLKMIGALDE
NENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSARDPFLLPQDKRDLAG
TAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSYI
LKDAGLVDSDANTNNSLSHNQSLVRGIICSGLFPGITSVVHRENSMSFKTMDDGQVLLYA
NSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVTKGSMAGHLKMLDG
YIDLFMDPSLCECYLQLKEELDKLVQKKLEDPSFDIHKEGKYILYAAQELAAGDLCEGRF
VFGRETSRARLSSSDDTKGNIIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAIV
EFKGMQFAGKPKRNKQLAERDAAIEALGWLTQTSGTKLQDDGDDSPLDLTDNMLKLLSRP
RRRSRNNSRK
NT seq 3453 nt   +upstreamnt  +downstreamnt
atgcgcggcggcttgcgccgcgggctgggcatcctcctcctcccgctctccagctcgccc
agccgggcgccgcggccgccggtcccgctcgctgctctgctcgtctaccaccgccgcctc
gatgtcttcgcccgccggtccttctgcagctccggcgggggctacgccgtggagcagttc
tccgacgacgagtacgaccacgagtacgaggatcaccggccgtcgtcgtcggtggcgaac
atcgacgagtggaggtggaagctgagcatgctgcagcgcaacgcggaggagcaggagatc
atctccagagaccggagggatcgccgggactacgaccagatcgccaacctcgccaagagg
atgggcctctacagtgagatgtatgggaaggtcattgttgcgagcaaggtcccgctgccg
aattacaggccggacctggacgacaagcggccacaaagagaggtggtgattccattaagc
ttacagaggagggttgaaggacttgtgcaggagcaccttgatcgtgcactcttgccggat
aaatgtggaactggaaatggttctgagatggctgagaaagctgagaatgtgaacctggat
gagcagcaggattcccttctcgatcgatcggtcatggagaagatccttcagaggaagagc
atacggatgcgcaattttcagagaagttggcaggaatcacctgaaggagttaagatgcta
gaattccggaaatcacttcctgcatacaaggaaaaggaaaggcttctagcagccattgca
cgcaatcaggttatagtgatatctggagagacagggtgtggcaaaacaacccagttgcct
caatttgtattagagtcagagatagaatctggccgtggggccttttgtaatataatctgc
acacaacctcggagaatttctgcaatggcagttgcagagagagtatccactgagagagga
gagaatcttggtgaatcggttggctacaaagttcgattggagggaatcaaaggaaaagac
acacatttgcttttctgcacaagtggtatattactacgacgattgctcagtgacagaaac
ctgaatggagtaactcatgtatttgttgatgaaatacatgaaagaggcatgaatgaagat
ttcttattgattgtcctaaaagacctattatcacgacgccgtgatttgaggttgatcttg
atgagtgctactctaaatgcggaactgttctcaagttattttggaggagcaccaactatc
catattcctggattcacatatccagtgagggcacattttctggaagatatattagagagg
actggctataagttgacctcaagcaatcaacttgacgattatggacaagataaagtctgg
aaaactcagaggcaactattacctagaaaaaggaaaaatcaaatcacaacgcttgttgag
gatgcccttaaaacttctagctttgagacctatggatcgaggacacgcgattctctgtca
aattggaatcctgattgcatagggtttaaccttatagaagctgttctttgccacatatgt
cgtaaagagcggtctggtgcagttctagttttcatgaccggatgggatgatatcagttgc
ttgaaggatcaactaaaggcacaccctttgttgggcgaccctaacagagttttactgctt
gcatgccatggttccatggctacagctgaacagaggttaatctttgagaagccacctcct
aatgttcggaagatagtgcttgccactaacatggcagaagcaagtattacaataaatgat
attgtttttgtcgtggattgtggaaaggcaaaggaaacgacatacgatgcactaaataac
actccctgcttgcttccctcatggatttcaaaggcttctgctcgtcagaggaggggcaga
gctggtcgtgtgcaacctggagaatgctatcacctctaccctagatgtgtgtatgatgca
tttgcagattaccagcttcctgagctccttagaactccattgaattcactatgtttgcag
ataaaaagtttgcaagttggcagcattggggagtttctatcagctgccttacagcccccg
gcaccactagctgtccaaaatgcagtggaattcctgaaaatgattggagcattagatgaa
aatgagaacctaactgatctaggaagatacctttccatgcttcctgttgatccaaagttg
gggaagatgcttataatgggtgcagttttccgctgcattgatcctatacttaccgtggtt
gctggattgagtgcccgggatcctttcctgctgccacaggacaagagagatttggcagga
accgccaaatcaagattctcagcaaaagattatagtgatcatatggccctagtccgggct
tatgaaggatggaaggatgcagagagagaagggtctgcttatgaatactgctggagaaat
ttcctttctgctcaaacacttcaagccattcactctcttcggaagcaattcagctatata
ttaaaggatgctggtttggtagactctgatgcaaatacaaataatagtttgagccataat
caatcattggtccgtggtatcatatgttctggacttttcccaggcataacatcagttgtg
catagagaaaactctatgtcgttcaagaccatggatgatggccaagttcttctttatgct
aattcagtgaatgctaagtaccagaccatcccttatccatggctggtctttggtgagaag
gtgaaggtaaatgctgtcttcatccgtgactcaaccggagtatcagattccatcctgatc
ttatttggtggtgctgttacaaaaggaagcatggctgggcacctgaagatgctcgatggt
tacatcgatttgtttatggatcctagcctgtgtgaatgctacttgcaacttaaagaagag
cttgataaacttgtacagaagaagcttgaagaccccagcttcgacatccacaaggaagga
aagtacatcttatatgccgcacaagagctcgctgcaggcgacctatgcgaaggaaggttt
gtgtttggccgcgagacgagcagagcaaggctcagcagcagcgacgacaccaaaggcaac
attatcaaggacggaatgaaccccaagagcctgctccagaccctgctgatgagggccggc
cacacccctcccaagtacaagacaaagcacctcaagaccaacgagttcagggccatagtg
gagttcaaagggatgcagtttgccgggaaacccaagaggaacaagcagctcgccgagagg
gacgccgccattgaagcgctgggatggctgacacagacctcagggacaaagcttcaggat
gatggcgatgattcccctcttgacctgacggataacatgctgaagttgctcagtagaccg
aggcggcggtccagaaacaattccaggaaatga

KEGG   Oryza sativa japonica (Japanese rice): 4348871
Entry
4348871           CDS       T01015                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4348871
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4348871
   03012 Translation factors [BR:osa03012]
    4348871
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4348871
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     4348871
Translation factors [BR:osa03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    4348871
SSDB
Motif
Pfam: DEXH1_3_5_N RNA_hel_CTD OB_NTP_bind HA2_C Helicase_C DEAD WHD_HA2 AAA_22 nSTAND3 NACHT BEX ABC_tran Rad17 DUF5128 AAA_19
Other DBs
NCBI-GeneID: 4348871
NCBI-ProteinID: XP_025876436
LinkDB
Position
10:complement(join(18142014..18142145,18142522..18142890,18143368..18143554,18143817..18144009,18144114..18144387,18144465..18144624,18145235..18145449,18146034..18146126,18146543..18146695,18146784..18146987,18147666..18147941,18148586..18148681,18148835..18149038,18149127..18149226,18149479..18149624,18150126..18150455))
AA seq 1043 aa
MLVHSSARRLLVSRGGGSGSGSFFPFAAAANACSRRALAPVSASAMSYRGGGGGRRGGGG
GPNSQRGRGRGGGGAGRGGGGGGRGGGGRGEQRWWDPQWRAERLRQMAGEVEKVDENEWW
NKIRQLREGSQQELVVKRNFGRDGQNILADMAQRQGLYFNVYNKGKTIVFSKVPLPDYRA
DLDERHGSTQQEIRMSNETERRVESLLAKAKSNSNDSASTSTLTTRQSRPSTSSSVTEST
KDIDKERLSSELRDIQNSRKMMPSARSMQSFRDKLPAFKMREEFLKAVAANQVLVISGET
GCGKTTQLPQFILEEEIDNLRGADCSIICTQPRRISAISVAARIASERGEELGDTVGYQI
RLESKRSAQTRLLFCTTGVLLRRLVQEPDLVGVSHLLVDEIHERGMNEDFLIIILRDLLP
RRPDLRLVLMSATINAELFSKYFGEAPIMHIPGFTFPVTELFLEDILEKTRYKINSERDN
FQGNSRRKRLASVKSDPISDAFEDVDIYKEYGNYSVATRQSLEAWSATELNLSLVEGTIE
YICRHEGEGAILVFLTGWDEISKLLDKIKGNNLLGNSNRFLVIPLHGSMPTVNQREIFDR
PPANMRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQR
RGRAGRVQPGACYRLYPKVIYDAMPQFQLPEILRTPLQELCLTIKSLQLGAVASFLAKAL
QPPDPLSVNNAIELLKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQCLDPAL
TIAAALAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSGRERSFC
WENFLSPMTLQMMDDMRNQFFDLLSDIGFVSKTRGLKAYNYYGKDLEMVCAVLCAGLYPN
VVQCKRRGKRTAFYTKDVGKVDIHPSSVNAGIHQFPLPYLVYSEKVKTASIYVRDSTNIS
DYALLLFGGSLSESKTGEGIEMLGGYLHFSAPRRIIELIQRLRGELDKLLQRKIEEPALD
IFSEGKGVVAAAVELLHSQNVHH
NT seq 3132 nt   +upstreamnt  +downstreamnt
atgctcgtccactcctccgctcgccgcctcctcgtctcccgcggcggcggcagcggcagc
ggcagcttcttccccttcgcggcggcggccaacgcttgctcacgcagagccctcgctcct
gtatccgctagcgccatgtcctaccgcggcggaggcggcgggcgtcgcggcggcggtggg
ggcccgaactcccagcgcgggcgcgggcgtggaggtggtggagcggggaggggaggggga
ggaggagggcgtggcggcggtgggagaggggagcagaggtggtgggacccgcagtggcgc
gccgagcggctccggcagatggccggcgaggtggaaaaggtcgatgagaacgagtggtgg
aacaagataagacaattaagagaagggtctcagcaggagctagttgttaagcggaatttt
gggcgtgatggacaaaacatactggcagatatggctcagagacaagggctttacttcaat
gtgtacaacaaagggaagacaattgttttcagcaaagttccactacctgattatcgagca
gaccttgatgagagacatggatcaacacaacaagagattaggatgtctaatgagactgag
agacgagtggagagccttttggccaaggcaaagtcaaatagtaatgattctgcaagcaca
tctactctaacaacgaggcaatctcggccaagcacatcttcgtcagtaactgaatcaaca
aaagatattgataaagaaaggctcagttctgagcttagggatatacagaactcaaggaag
atgatgccaagtgctaggtcgatgcaatcttttagggataaactaccagcattcaaaatg
agagaggagtttttaaaagcagtagcagccaatcaggttctagtaatttctggtgagaca
ggctgtggtaaaacaacacagcttccacagttcatactagaagaggagatagataacctt
cgtggtgctgattgtagcataatatgtactcagcctcgccgtatatctgccatatcggtt
gcagctcgtatagcatctgagaggggtgaagagcttggcgataccgttggataccagatt
cgccttgaatcgaaacgatctgcacaaaccagactgctattctgcaccacaggagttcta
cttagaagattggttcaggagccagacttagttggtgtaagccatttactagttgatgaa
attcatgaacgtggcatgaatgaagattttctcatcataattcttcgcgaccttctgcca
aggcgtccagacctccgccttgtattgatgagtgcaaccataaatgcagaacttttttcc
aaatattttggagaggcaccaattatgcatatcccgggcttcacatttcctgttaccgag
ttgtttttggaagatattttagagaagacccggtacaagatcaattctgaacgtgacaat
tttcaagggaactcaagaagaaagaggcttgcatcagttaagagtgatccaatatctgat
gcttttgaggatgttgacatttataaggaatatggaaattacagcgttgcaactaggcaa
tcccttgaagcttggtcggctaccgaactaaatttgagccttgttgaaggtacaattgag
tacatctgtcgtcatgaaggagaaggtgcaatccttgtgttccttactggttgggatgaa
atttcgaaacttttggataagattaaggggaataatctccttggaaattccaatagattc
ctggttattccactccatggttctatgcccactgtcaatcagcgtgaaatttttgataga
ccaccagccaatatgaggaaaattgttttggcaacaaatattgcagaaagcagtattaca
atagatgatgttgtctatgtaattgattgtggcaaagcaaaggaaacaagttatgatgcc
ttaaataagcttgcatgccttctaccatcatggatatcaaaagcttctgcccatcagagg
cgaggtcgtgcaggacgtgttcagcctggtgcttgctataggctgtatcctaaagtcatt
tatgatgcgatgccacagtttcagttacctgaaattcttaggactcctttgcaagagctc
tgtcttactatcaaaagcttacagcttggagctgtagcctctttcttagccaaggcactg
cagccaccagacccgctttctgttaataatgcgatcgagcttttgaaaaccgttggagca
ttggatgacgtggaggagctgacttctttagggcgacatctttgtacacttccgctagat
ccaaacattggaaaaatgctgcttattggatctgtttttcagtgtctggatcctgcatta
acaatcgctgctgctcttgcatatcgtaatccatttgtgctcccaatagataggaaagaa
gaagctgatgctgtcaaaagatcatttgctggtgactcctgcagtgatcacattgctctt
gttaaggcgttcgaagcatggaaggaagcaagacgcagtggaagagaacgctctttctgc
tgggaaaatttcctttcacccatgaccctgcagatgatggatgacatgcgtaatcagttt
tttgatctactatctgacattgggtttgttagcaaaacaagaggattgaaggcatataat
tattatggaaaggatctggagatggtatgtgctgtcctatgtgctgggctttacccaaat
gtcgttcagtgcaaaagacgaggcaagaggacagcgttttacaccaaagatgttggcaaa
gtggatatccatccatcatcagtcaatgcgggaattcaccaattcccattgccttatctg
gtttatagcgagaaggttaaaactgctagcatttatgtcagggattccacaaacatttcc
gactatgctcttctcctctttggtggttctctcagtgagagcaaaactggagaaggcatt
gagatgcttggggggtatcttcatttctctgcaccaaggcgtatcatagagttgatccag
agattaagaggtgaattggacaaactcctccagaggaagatcgaggagcctgcacttgac
atattttctgaaggaaaaggcgttgtggcggcagcagtagaactgctgcacagccaaaac
gttcaccactag

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