Oryza sativa japonica (Japanese rice) (RefSeq): 4325640
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Entry
4325640 CDS
T01015
Name
(RefSeq) DNA repair helicase XPB1
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022
Basal transcription factors
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4325640
09124 Replication and repair
03420 Nucleotide excision repair
4325640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4325640
03400 DNA repair and recombination proteins [BR:
osa03400
]
4325640
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
4325640
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
4325640
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
4325640
BRITE hierarchy
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
4325640
NCBI-ProteinID:
XP_015648599
UniProt:
B9EYX5
LinkDB
All DBs
Position
1:28545559..28553750
Genome browser
AA seq
766 aa
AA seq
DB search
MAGGDGDRARAPKRHKSSAPSRSIDETAELDYTDDVDDDVRDADREVKKRDFTKLELKPD
HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
LETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLK
DDIICRARISPEDSVGAPSFTISKTAGEMASGHEDLLDGMELAAATEDKETHSFEIDPSQ
VENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRAR
SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTS
DNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
VISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
MTKEFFAEYLKKENSKKKQVLYAMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTSY
AMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKVGDNSIDIPEANVIIQISSHAG
SRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY
SFKVITSLPPPEELPNLKYYTLNDQLELLAQLLSARDDMIGIEHLEEDSDGKALMKARRS
AGSMSAFSGSGGMVYMEYSTGKGKAGASKKPKDPSKRHYLFKKRYQ
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atggccggcggcgacggcgatcgcgcccgcgcgccgaagcggcacaagtcctcggcgccg
tcgaggtcgattgacgagaccgccgaactggactacaccgatgacgtcgatgacgacgtc
cgcgatgccgatagggaggtgaagaagagggacttcaccaagctagagctgaagccggat
cacgcgaacaggccgctctgggcctgcgccgatggccgcatcttcctggagacgttttcg
cccctatacaaacaagcctacgatttcttgatcgctattgcggagcctgtttgcaggcca
gaatccatgcacgagtacaatctaacaccccactcactatatgctgcggtctcagttggg
cttgagactagcactataatcagtgtcatgagcaagctctccaagactaaactgcctcgt
gaaataattgattttatccatgcatcaactgccaattatggtaaagtgaagcttgttctg
aagaagaatcgatattttgtggagtctccattccctgaggttttgaagacgcttctgaaa
gatgatatcatttgcagagcacggatatctcctgaggattccgttggggcaccttcattt
actattagcaaaacagctggtgaaatggctagtggccatgaggacttattagatggaatg
gaactggctgctgcaactgaagacaaggaaacacattcttttgaaattgatccttctcag
gttgagaatgtgaagcagcgttgcttgccaaatgcactgaacttccccatgctggaggag
tacgattttagaaacgacacagtgaatccagatttggagatggaattaaagccccaggca
cgcccaaggccatatcaagaaaagagcctcagcaagatgtttgggaatggcagagcaagg
tcaggcattattgtgttaccttgtggtgctggcaagtccttggttggtgtatctgctgca
tgtcgtatcaagaagagttgtctatgtttggccacaaatgctgtatcagttgatcaatgg
gcatttcagttcaagctttggtcaactataaaagatgaacatatcagccgttttacatca
gataacaaggagaaattccgtggaatggccggtgtagttgtgactacatataacatggtt
gcatttggaggtaaacggtctgaagactctgagaagataattgaagaaattcgaaatagg
gagtggggcttgctcctaatggatgaggtccatgttgttcctgcacatatgttcagaaag
gtcatcagcattacaaaatctcactgcaagcttggtcttactgctacacttgtgagagag
gatgaacgcatcactgatttaaattttcttattggaccaaagctgtatgaagcaaactgg
ttggatttagtgaaaggtggatttattgcaaatgtgcagtgtgccgaagtttggtgtccc
atgaccaaagagttctttgctgagtatttgaaaaaagaaaattcaaagaagaagcaggtc
ctctatgcgatgaacccaaacaaattcagagcttgcgagtttctaattcgattccatgag
caacaacgtggggacaagataattgtgtttgccgataatctatttgcactaactagctac
gcaatgaagctccgtaaaccaatgatttatggttccacaagccatgttgagaggacgaga
attctgcatcaattcaagaacagctcagatgtgaatacaattttcctttcaaaggtgggt
gataactcgattgatattccagaagcaaatgtgatcatacaaatttcatctcatgctggt
tcacggcgtcaagaagctcaacggttgggacgtattctcagggcaaagggtaagcatcaa
gacaggatggctggtggaaaagaagaatacaatgcgttcttctactctcttgtatcgact
gacactcaggagatgtactactcaactaaaaggcaacaatttcttattgaccagggatat
agcttcaaggtgatcaccagcttgccgccacctgaagaattacctaacctgaaatattac
acacttaatgatcagcttgaacttttggcacaattgctgagtgcaagggatgacatgatt
ggcattgagcacttggaagaggattctgatggcaaggctcttatgaaagcacggcgatct
gctggatcaatgagtgccttttctggatcggggggaatggtctacatggagtacagcact
ggtaaggggaaggctggagcttccaagaaaccgaaggacccttcaaagaggcattacctg
tttaagaagcgttatcaatga
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