KEGG   Oryza sativa japonica (Japanese rice): 4325640
Entry
4325640           CDS       T01015                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase/translocase subunit XPB1
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03022  Basal transcription factors
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    4325640
  09124 Replication and repair
   03420 Nucleotide excision repair
    4325640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4325640
   03400 DNA repair and recombination proteins [BR:osa03400]
    4325640
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     4325640
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     4325640
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     4325640
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom
Other DBs
NCBI-GeneID: 4325640
NCBI-ProteinID: XP_015648599
UniProt: B9EYX5
LinkDB
Position
1:join(29133747..29133762,29133869..29133979,29134107..29134275,29135637..29135859,29135944..29136000,29136514..29136657,29136735..29136815,29137822..29137909,29138375..29138712,29138807..29138882,29138970..29139163,29139642..29139805,29139876..29139948,29140033..29140146,29140635..29140715,29140839..29140898,29140976..29141059,29141155..29141297,29141395..29141479)
AA seq 766 aa
MAGGDGDRARAPKRHKSSAPSRSIDETAELDYTDDVDDDVRDADREVKKRDFTKLELKPD
HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
LETSTIISVMSKLSKTKLPREIIDFIHASTANYGKVKLVLKKNRYFVESPFPEVLKTLLK
DDIICRARISPEDSVGAPSFTISKTAGEMASGHEDLLDGMELAAATEDKETHSFEIDPSQ
VENVKQRCLPNALNFPMLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRAR
SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTS
DNKEKFRGMAGVVVTTYNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
VISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
MTKEFFAEYLKKENSKKKQVLYAMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTSY
AMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKVGDNSIDIPEANVIIQISSHAG
SRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY
SFKVITSLPPPEELPNLKYYTLNDQLELLAQLLSARDDMIGIEHLEEDSDGKALMKARRS
AGSMSAFSGSGGMVYMEYSTGKGKAGASKKPKDPSKRHYLFKKRYQ
NT seq 2301 nt   +upstreamnt  +downstreamnt
atggccggcggcgacggcgatcgcgcccgcgcgccgaagcggcacaagtcctcggcgccg
tcgaggtcgattgacgagaccgccgaactggactacaccgatgacgtcgatgacgacgtc
cgcgatgccgatagggaggtgaagaagagggacttcaccaagctagagctgaagccggat
cacgcgaacaggccgctctgggcctgcgccgatggccgcatcttcctggagacgttttcg
cccctatacaaacaagcctacgatttcttgatcgctattgcggagcctgtttgcaggcca
gaatccatgcacgagtacaatctaacaccccactcactatatgctgcggtctcagttggg
cttgagactagcactataatcagtgtcatgagcaagctctccaagactaaactgcctcgt
gaaataattgattttatccatgcatcaactgccaattatggtaaagtgaagcttgttctg
aagaagaatcgatattttgtggagtctccattccctgaggttttgaagacgcttctgaaa
gatgatatcatttgcagagcacggatatctcctgaggattccgttggggcaccttcattt
actattagcaaaacagctggtgaaatggctagtggccatgaggacttattagatggaatg
gaactggctgctgcaactgaagacaaggaaacacattcttttgaaattgatccttctcag
gttgagaatgtgaagcagcgttgcttgccaaatgcactgaacttccccatgctggaggag
tacgattttagaaacgacacagtgaatccagatttggagatggaattaaagccccaggca
cgcccaaggccatatcaagaaaagagcctcagcaagatgtttgggaatggcagagcaagg
tcaggcattattgtgttaccttgtggtgctggcaagtccttggttggtgtatctgctgca
tgtcgtatcaagaagagttgtctatgtttggccacaaatgctgtatcagttgatcaatgg
gcatttcagttcaagctttggtcaactataaaagatgaacatatcagccgttttacatca
gataacaaggagaaattccgtggaatggccggtgtagttgtgactacatataacatggtt
gcatttggaggtaaacggtctgaagactctgagaagataattgaagaaattcgaaatagg
gagtggggcttgctcctaatggatgaggtccatgttgttcctgcacatatgttcagaaag
gtcatcagcattacaaaatctcactgcaagcttggtcttactgctacacttgtgagagag
gatgaacgcatcactgatttaaattttcttattggaccaaagctgtatgaagcaaactgg
ttggatttagtgaaaggtggatttattgcaaatgtgcagtgtgccgaagtttggtgtccc
atgaccaaagagttctttgctgagtatttgaaaaaagaaaattcaaagaagaagcaggtc
ctctatgcgatgaacccaaacaaattcagagcttgcgagtttctaattcgattccatgag
caacaacgtggggacaagataattgtgtttgccgataatctatttgcactaactagctac
gcaatgaagctccgtaaaccaatgatttatggttccacaagccatgttgagaggacgaga
attctgcatcaattcaagaacagctcagatgtgaatacaattttcctttcaaaggtgggt
gataactcgattgatattccagaagcaaatgtgatcatacaaatttcatctcatgctggt
tcacggcgtcaagaagctcaacggttgggacgtattctcagggcaaagggtaagcatcaa
gacaggatggctggtggaaaagaagaatacaatgcgttcttctactctcttgtatcgact
gacactcaggagatgtactactcaactaaaaggcaacaatttcttattgaccagggatat
agcttcaaggtgatcaccagcttgccgccacctgaagaattacctaacctgaaatattac
acacttaatgatcagcttgaacttttggcacaattgctgagtgcaagggatgacatgatt
ggcattgagcacttggaagaggattctgatggcaaggctcttatgaaagcacggcgatct
gctggatcaatgagtgccttttctggatcggggggaatggtctacatggagtacagcact
ggtaaggggaaggctggagcttccaagaaaccgaaggacccttcaaagaggcattacctg
tttaagaagcgttatcaatga

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