KEGG   Oryza sativa japonica (Japanese rice): 4326864
Entry
4326864           CDS       T01015                                 
Name
(RefSeq) protein VACUOLELESS1
  KO
K20180  vacuolar protein sorting-associated protein 16
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    4326864
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4326864
Membrane trafficking [BR:osa04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    4326864
   Hops complex
    4326864
SSDB
Motif
Pfam: Vps16_C Vps16_N ANAPC4_WD40
Other DBs
NCBI-GeneID: 4326864
NCBI-ProteinID: XP_015651417
UniProt: A0A0P0V678
LinkDB
Position
1:join(27839945..27840976,27841555..27841845,27842115..27842254,27844092..27844197,27844281..27844373,27844781..27844870,27844985..27845098,27845786..27845908,27846091..27846164,27846261..27846315,27846524..27846705,27847342..27847471,27847553..27847655,27847811..27847908,27848635..27848802)
AA seq 932 aa
MGYRVELVPIRLDPHVRGLTVPSRSPRQSTSFLTAHLARDAAAASPPAMSSSVSVAAEWD
LLSDRFYRRITVYSPLPWSPPSAAAASSSSTSGGGGGGGGSGGVLGRLDLSTHIVAAAPF
GGPIAAVRDDSKIVQLHSEPSRRRLLLYSSSGHPIASSPWPPQLPRLHSLAFSSSLNLVA
LLSDGSLLRFRLPDLKPNPSPTPVPLLPTSSGGVADAAFWGGGVAVLTEDNRVVVTTDID
AADPHPREFADPCVGQDEQVLCMAVVEPQFVMSGSPEVLLAVGDRVLAVDEDDVQTLGLE
LEIGPVQKMAVSPNGKLLAAFAHDGRLLVIPTDFSKIIFEYECDSALPPDQIAWCGLDSV
LLYWSAALLMVGPNGDPVLYNYDEPIKLIPECDGVRILSNSNMEFLHRVPDSTTSIFGIG
SMSPAALLYDARDHYDKQSAKAYDNYQLISSSLPEAIEACIDAAGHEFDISRQHALLRAA
TYGLAFCSQFPHERFQEMCKTLRVLNAVRDPQIGMPLTIQQYKLLTAPVLIGRLINANQH
LLALRISEYLNLNPEVVIMHWACEKITASAAIPDTVLLEGLLDKLRLCKGISYAAVAAHA
DNSGRRKLAAMLVDHESQSSKQIPLLLSIDEQDKALSKAIESGDTDLVYLVLFHIWQKVA
VEKSAPLDFFGVINARPLARDLFMAYARHSKHEALKDFFLSTGRLQDAAFLLLKESRELE
RNPMASKGSPLHGPQVRLIEQAHRLFAETKEHVFESKASEEHAKLLRSQHELEVSTKQAI
FVGSSVSDTIKTCIAMGNERAALKVKSEFKVPDKRWYWLKSCALATVGNWDALEKFSKER
RPPGGYKPFVEACIDAGQKTEALKYIPKLTDPRERSEAYARIKMAKEAAEAASQVKDSDE
LFGRLKLTLAQNTAAASIFDTLRDRLSFQGTY
NT seq 2799 nt   +upstreamnt  +downstreamnt
atgggctaccgtgtggagctcgttcccatccgattggacccacatgtcaggggactaacc
gtcccgtctcgatccccgagacagtccacctccttcctcacagcccatctcgcgcgcgac
gccgccgccgcctcgccgccggcgatgtcctcctccgtctccgtcgcggcggagtgggac
ctcctctccgaccggttctaccgccgcatcaccgtctactccccgctgccctggtcgccc
ccttccgccgccgccgcgtcctcgtcctccacctccggtggcggcggcggcggcgggggg
agcggtggcgtgctcggccgcctcgacctctccacgcacatcgtcgccgcggcgccgttc
gggggcccgatcgccgccgtccgggacgactcgaagatcgtgcagctccactcggagccg
tcgcggcgccgcctcctcctctactcctcctccggccaccccatcgcgtcctccccgtgg
ccgccccagctcccccgcctccactcgctcgcgttctccagctccctcaacctcgtcgcg
ctgctctccgatgggtccctcctccgcttccgcctccctgatctgaagcccaaccctagc
cccacccccgtgcccctgctccccacgtcctccggcggcgttgccgacgctgccttctgg
ggaggcggcgtagctgtcctcacggaggacaaccgcgtcgtggtgaccacggacatcgac
gccgcggaccctcacccgcgtgagttcgccgacccttgcgttggccaggacgagcaggtg
ctgtgcatggctgtggtggagccgcagtttgtcatgtccgggagcccagaggtactgctt
gcggttggtgatcgagtgctggcggttgatgaggatgatgtgcagacactcgggttggag
ctggagattggacctgtgcagaagatggcagtttcccccaatgggaagctgcttgccgca
tttgcgcacgatgggcgcctgctcgtcatccctacggatttctccaagataatcttcgag
tatgagtgtgattccgcattgccaccagatcaaatagcttggtgtggattggacagcgtg
cttctttactggtcagcagctcttttgatggttggtccaaatggagatccggtgctgtat
aattacgatgaacccataaagctcattccagagtgtgatggtgtaagaatcctctcaaac
tcaaatatggaattcctacaccgagtccctgattccactacatcaatttttggcattgga
agcatgtccccagcagcattgctgtatgatgctagagatcattatgacaaacaaagtgcc
aaggcatacgataattatcagttgatttcttcttccttgcctgaggcaattgaagcatgt
atagatgctgctggccatgagtttgatatttcacgccaacatgcgttactgagagctgct
acttatggcctggctttctgcagtcaatttccacatgaacgttttcaagaaatgtgcaaa
acattacgggttctaaatgctgtacgtgatcctcagattgggatgccacttaccattcag
cagtacaagttacttactgcaccggtactcattggacgtctgatcaatgccaaccagcac
cttttggcacttcgcatctctgagtacctcaacctcaacccggaggtcgtgattatgcat
tgggcatgtgagaagataacagcatcagcagctatcccagatacagtccttcttgagggc
ttgcttgacaagctcaggttatgcaagggcatatcatatgctgcagtagcagctcatgca
gataacagtggcaggcgaaagttggctgccatgcttgttgaccatgagtcccaatcatca
aagcagattccgttactgctaagcattgatgaacaagacaaggcattgtcaaaggcaatt
gagagtggggatactgatcttgtgtaccttgtgcttttccatatctggcagaaggtagct
gtagaaaagagtgctccattggatttttttggcgtaatcaatgcaaggcctttggctcgt
gatttgtttatggcatatgcaagacattccaagcatgaagctctaaaggacttctttcta
tcaacagggagacttcaggatgctgcctttcttttattgaaagagtcaagggaattggag
aggaatccaatggcaagcaagggatctcctctccatggtccacaagttcggctcattgag
caggcccacagactttttgctgagaccaaggagcatgtttttgaatccaaagcttctgaa
gagcatgcaaaattgctaagatcacaacatgaactagaagtttccacaaaacaagcaata
tttgtgggttctagtgtcagcgatactatcaaaacatgtattgccatgggaaatgaacga
gctgcactcaaagtgaagtcagagttcaaggttcctgataagaggtggtactggctcaaa
tcatgtgctttagctacagttgggaactgggatgcgttggaaaagttttcgaaagagagg
aggccaccaggaggctataaaccttttgtggaagcatgtattgatgctggtcaaaaaact
gaagctcttaagtacattccaaagttgacagatcctcgtgaacgatctgaggcatatgca
cggatcaagatggcaaaggaagctgcagaagcagcttcacaggtcaaagatagtgatgag
ctatttggtcgcctaaagcttacacttgcacagaacacagccgcggcttctattttcgat
acattgcgggatcgactatccttccaagggacatactga

KEGG   Oryza sativa japonica (Japanese rice): 4333909
Entry
4333909           CDS       T01015                                 
Name
(RefSeq) vacuolar sorting protein 39 isoform X1
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    4333909
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4333909
Membrane trafficking [BR:osa04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    4333909
SSDB
Motif
Pfam: Vps39_2 Vps39_1 CNH Clathrin AlaDh_PNT_N
Other DBs
NCBI-GeneID: 4333909
NCBI-ProteinID: XP_015631423
UniProt: Q10DX1 Q0DP47
LinkDB
Position
3:complement(join(29843947..29844147,29844877..29844975,29845306..29845731,29845992..29846234,29846439..29846660,29847125..29847454,29849113..29849533,29850025..29850137,29850957..29851100,29851172..29851303,29851535..29851746,29852827..29853238))
AA seq 984 aa
MVHSAYDAVELVSGVPGDIVAVAAYAGRLLVAGKDGSLRIYASPGHAGGGIPRDGPYALE
RQQPSLWRRGTPLAMEVSAGRELLLSLAECVNLHRLPGLETVAVIGKTKGANLFAWDDRR
GLLAVGRWKRLTIFRLDSGREFVEVKEFGVPDTVKSMAWCGDNICLGIRKEYMIINSMTG
ALTEVFSSGRNAPPLVVALPTGELLLGKDNIGVFVDQNGKLIQDGRIIWSDTPASVAIHR
PYAVARLPRHVEIRSLRAPNALVQTVVLRDVQKLVETENCILAVLARSVYGLLPVPIGAQ
IVQLTASGEFEEALALCKLLPPEDSNLRAAKESSIHIRYGHFLFDNGSYEEAMEQFSDSH
VDITYVLSLYPSLVLPQTHIIGEHDRLQDLPELARESSDVTDDMEPYSLQLHESDDKSPL
EIKKMSHNALIALVKYLHKKRNGIIERATAEVTEEVVSGAVHHSSILSESYRSKKPNKKR
AQTHTSSIAREMATVLDTSLLQALILTGQSSGAIELLKGLNYCDLKICKEFLEERSDYMV
LLELYKSNEMHREALQLLNQLVEESKAEMGKNDFNKKFNPQMIIEYLRPLCRSDPMLVLE
SSLYVLERNPSDTIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMSVSGINPNLQN
ELVQLYLSEVLDWHKILKEEGNWTEKTYSPTRKKLITTLENNSGYNTDILLKRLPQDALF
EERAILYGKINQHLRALSLYVHKLQMPERAVAYCDRVYEEGAQQPSKSNIYFNLLQIYLN
PRKAEKEFEQKIVPVASQYPGIQKVTKVRGARMGKKVVEIEGADDVRFSPSGTDSGRSDG
DGDGDDVSDGGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQDLVLFLEPLLRNSSE
HRRNYMVIKNLIFRANLQVKEDLYKRRQAVLKIDGDSMCSLCHKRIANSAFAIYPNGQTL
VHFVCFRESQQIKAVRGVNSVKRR
NT seq 2955 nt   +upstreamnt  +downstreamnt
atggtgcacagcgcgtacgacgccgtcgagctggtctccggcgtgccgggcgacatcgtg
gccgtggccgcctacgccgggaggctcctcgtcgcggggaaggacggctccctccgcatc
tacgcctccccgggccacgccggcggcgggatcccgcgggacgggccgtacgcgctggag
cggcagcagccctcgctgtggcgccgcgggacgcccctggcgatggaggtcagcgccggc
cgcgagctcctgctctcgctcgccgagtgcgtcaacctccaccgcctccccgggctcgag
accgtcgccgtcatcgggaagaccaagggcgccaacctcttcgcctgggacgaccgccgg
ggcctcctcgcggtcggccgctggaagcgcctgaccatcttccgccttgacagtgggagg
gagtttgttgaggtgaaggaatttggagttccggataccgtgaaatcaatggcctggtgt
ggcgacaacatttgtcttgggattagaaaggagtatatgatcataaatagtatgactggt
gcattaactgaagtgttttcttctggaaggaatgctccacctttagttgtggctcttcct
actggggagctcctcctgggaaaggataatattggagtatttgttgaccaaaatgggaaa
cttattcaagatggcaggataatttggtcagacacgcctgcctctgttgctatacatagg
ccatatgcggtggcacgcctgccacggcatgttgagatacggtcccttagagcccccaat
gcattggttcagacggttgtacttcgtgatgttcaaaagcttgttgaaactgagaactgt
atacttgctgtgctagcccgctctgtttatggcttgttgcctgttcctattggtgcccag
atagtgcagttgactgcatctggtgaatttgaggaggctctggcgttgtgtaagctactt
cctccagaggattcaaacctacgagctgcaaaggaaagctcaatacacataagatatgga
cactttttatttgataatgggagctatgaggaggcaatggagcagttctctgattcacat
gtggatattacttatgtcctatctctatatccatctcttgttctgcctcaaacgcacatc
ataggtgaacatgaccggctgcaagatctgccagaattagcaagagaatcatctgatgtg
acagatgatatggaaccatactctctacaacttcatgaatctgatgataaatctccattg
gagataaagaaaatgagccacaatgctctaattgcccttgtgaagtatttgcacaagaaa
agaaatggaataattgagagagcaacagctgaagtcaccgaggaggtggtctctggagct
gtgcaccacagctcaatcttatctgagtcatatcgatcaaagaagccaaataagaagcga
gctcagacgcatacaagctctattgctagagaaatggctactgtactggacacatctctt
cttcaagctcttattcttactggacagtcttcaggggcaatagaattgttgaagggactt
aactattgtgatctgaagatatgcaaagaatttttagaggaaaggagcgattatatggtg
ttacttgagctctacaaaagcaatgagatgcaccgtgaagctctccaactgcttaatcaa
ttagttgaagaatcaaaggctgagatgggaaaaaatgattttaacaaaaagttcaatcca
caaatgatcattgaatatctaaggcccctctgtcggtctgacccaatgctggttttggaa
tcatctttatatgtccttgaacgcaacccttcagacactattgagctctttttatcagaa
aatgttccagcagatttagtaaattcatatctaaaacagcatgctccaaatttgcagtca
acttacttggaactaatgctttcaatgagtgtatctgggatcaaccctaatctgcaaaat
gagctggtacaactatacctttctgaggttcttgactggcacaagattctgaaggaagag
ggaaactggactgagaaaacatattccccaacacggaagaagctgataactacattagag
aacaattcaggttacaacacagatatacttcttaagcgtcttccgcaagatgctcttttt
gaagagcgcgctatattgtatgggaaaataaatcaacatctccgtgcactctctctttat
gtgcataagctccagatgccagagcgagcagttgcatattgtgaccgtgtttacgaggaa
ggagcacaacaaccttccaaatcaaatatctatttcaatctcctacaaatctatctgaac
ccaagaaaagctgaaaaggaatttgagcagaaaattgttccagtggcatcacagtaccct
ggaattcagaaggttactaaggttagaggggcgcgtatgggtaaaaaggttgttgagatt
gaaggggctgatgatgtgcgctttagccccagtggaactgatagtggtcgaagtgatggt
gatggtgatggtgatgatgttagtgatggaggcccaataatgttgaatgaagcacttgaa
ttgttaagccaacggtgggatagaataaatggtgcccaagctcttcgtttgttacctaga
gacacgaaactccaggatctggtgttatttcttgaaccacttctgcggaactctagtgaa
catcgacgcaattatatggttatcaagaacttgatttttcgggcaaatttgcaggtaaag
gaggatctgtataaacggcgtcaagctgttctgaagattgatggagatagcatgtgttct
ctttgtcataagcggattgcaaatagtgcttttgctatttatccaaatgggcagacgttg
gtgcattttgtctgctttagagaatcacagcagattaaagctgttagaggagtaaactct
gtgaaacgtagatag

KEGG   Oryza sativa japonica (Japanese rice): 4335134
Entry
4335134           CDS       T01015                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    4335134
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4335134
Membrane trafficking [BR:osa04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    4335134
SSDB
Motif
Pfam: Clathrin WD40 PROPPIN zf-RING_2 ANAPC4_WD40
Other DBs
NCBI-GeneID: 4335134
NCBI-ProteinID: XP_015636650
LinkDB
Position
4:join(6605033..6605320,6605861..6606133,6606216..6606395,6606883..6607143,6607618..6607750,6607851..6607941,6608368..6608470,6609004..6609107,6609256..6609349,6609432..6609587,6609671..6609733,6609835..6609900,6610117..6610317,6610446..6610523,6610612..6610731,6610829..6610909,6610995..6611080,6611367..6611478,6611540..6611929)
AA seq 959 aa
MSTAARRGHPPPHENGVGGHADDEPDEDGEEEEEEGEGEVEDDEEEEPRLKYQRLGGSVP
AIVSTDAAAAIAVADRMVALGTHNGTLHILDFQGNQVKEIAAHTATINDISFDADGEYIG
SCSDDGTVVISSLFTDEKLKFEYHRPMKAIALDPNYYNNYRRFATGGLAGQVLVLTKKSW
GGGYHKKVLRDGEGPIHSMKWRTDLLAWANDAGVKVHDMKTDKGIAFIERPKGIPRPEFL
LPQLVWQDDTILVIGWGTSVKIAAIRTDSSQGLNGIQRSITASNEKYVDIVGSFQTGYHI
SGIAPFGDLLVVLAYIPEEEDRENSFSNSVPSRQGTAQRPEIHLVSWKNDELTTDALPIH
GYEHYKAKDYALAHAPFSGSSNAGGQWAAGDEPLYYIVSPKDIVVAKPRDAEDHISWLLQ
HGWHEKALAAVEAGQGRTELLDEVGSRYLDHLIIERKYAEAARLCPKLLRGSPSAWERWV
FHFAHLRQLAVLVPYIPTENPQLSDTAYEVALVALTTNPSFHELLLTTVKKWPPTLYSAS
PVISAIEPQLNSSSMTDSLKEALAELYVINSQYDKALSLYAELLKPEVFEFIEKHNLHDA
IHDKVVNLMILDSKRTVNLLIQHRDTIPPNEVVGQLLHASKSCDKRHLLHLYLHALFETD
MNAGKDYHDMQVELYAEYEPRMLIPFLRTSQHYRLDKAYEIFAQKELVREQVFVLGRMGN
AKEALSTIINKLEDIQEAVEFVMEQHDDELWEELIRQCLQKPEMVGMLLEHTVGNLDPLY
IVSLVPDGLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKVNIQEKDILKADCVNLLVKY
YHEARRGVYMASMDEEVTGTRVAEGSSRANERSSSLRALEIKSRTRCGARCCLCFDPLSI
QDISVIVFYCCHAYHTSCLEGGLDLMKSNSSTQDSDEDDEGTPSGESRMRCVLCTTAAA
NT seq 2880 nt   +upstreamnt  +downstreamnt
atgtccacggcggcgcggcgcggccacccgccgccgcacgagaacggcgtgggcgggcac
gccgacgacgagccagacgaggacggcgaggaggaggaggaggagggggagggggaggtg
gaggatgatgaggaggaggagccgcggctcaagtaccagcggctgggcgggagcgtcccc
gcgatcgtctccaccgacgccgccgcggccatcgccgtcgccgaccgcatggtcgcgctc
ggcacgcacaacggcaccctccacatcctcgacttccagggtaatcaggtaaaggaaatt
gctgctcacacagcaactatcaacgacatcagttttgatgcagacggtgaatatatagga
agctgctctgatgatgggactgtagtaataagcagcctcttcactgatgaaaaactgaag
tttgagtaccatcgacccatgaaagcaattgccttagaccctaattattacaacaactat
agaaggttcgctacagggggtttagcaggtcaagtacttgtgctgacaaaaaagtcgtgg
ggaggtggctaccataaaaaggttctgcgtgatggcgaaggaccaatccattctatgaaa
tggaggacagacctccttgcctgggctaacgatgcaggggtaaaagtgcatgatatgaag
acagacaaaggaatcgcgtttatagagaggccaaaaggaattcctcggccagagttttta
cttcctcagttggtctggcaggatgataccatcttagttattggatggggaacaagtgtc
aagattgcagcaattcgaacagattcatctcaaggactcaatggcatacagaggagtatc
actgcaagtaatgagaagtacgtggatattgtgggttcgttccaaacaggctatcacata
tccgggattgctccatttggtgatcttttagttgtgcttgcatatattccagaggaggaa
gacagagaaaacagttttagcaattctgttccttcacgtcagggaactgcccagcgtcca
gaaatacatcttgtatcatggaaaaatgatgaacttaccacagatgctcttcctattcat
ggttatgagcattataaggcaaaggattatgctcttgctcatgctcctttctcaggaagc
agcaatgcaggtggacagtgggctgctggtgatgaacctttatattacattgtatctcct
aaagatatagtggtcgcaaagccaagagatgctgaagaccatatttcttggcttcttcaa
catggttggcatgaaaaggcattggctgcagttgaagcaggacaaggacgaaccgagctt
cttgatgaggtgggttcgagataccttgatcatttgataattgaaagaaaatatgctgaa
gctgcacgcctctgtccaaaattgttgcgaggatctccttcagcatgggagaggtgggtc
tttcactttgcccatcttcgccaacttgctgtattagttccttacatacctacagagaat
cctcagctgagtgatacagcttacgaggttgctcttgtagctttaactaccaatccttct
tttcatgaacttctcttgacaactgtaaaaaaatggccacctacattatactccgcttca
cctgtcatatctgcaattgagccacagctaaattcctcttcaatgactgattcattaaaa
gaggctttagctgaattgtatgtcatcaacagtcaatatgacaaggccctttctctgtat
gctgaactcttgaagccagaagtattcgaatttattgagaagcacaacttgcatgatgcc
attcatgacaaggttgtcaatcttatgatattggatagtaaaagaactgtaaacctattg
atccagcatcgtgatacgatccccccgaatgaagttgtaggacagttgttgcatgctagt
aaaagttgtgacaaaagacatttgttgcatctgtatttacatgctctgtttgagacagac
atgaatgctggaaaagactatcatgacatgcaggtggagctttatgcagagtatgagcca
aggatgctaatacccttcctccgtaccagtcagcattacaggcttgacaaggcatatgaa
atctttgcacaaaaagagcttgtacgggagcaagtttttgtgcttggtcgtatgggaaat
gcaaaggaagctctctctacaattataaacaaattggaagatattcaggaggccgttgaa
tttgtgatggagcaacacgatgatgagttatgggaggaattgataagacagtgcctccaa
aaacctgagatggttggaatgctgttggaacatactgttggcaatcttgatcctttgtac
attgttagtttggttcctgatgggctagaaataccaaggttgcgggatcgccttgtgaaa
attgtgacagactatcgaacagaaacttcattaagacatgggtgcaatgatatacttaag
gttaatattcaagaaaaagatatacttaaggctgattgcgtaaaccttttggtaaaatat
tatcacgaggctcggcgtggagtctacatggctagtatggacgaggaggtgacaggaact
agggttgctgaaggatcttcacgagcaaacgagagatcatcaagtttacgagctttagag
atcaaatccagaacaaggtgtggtgctcggtgttgcttgtgctttgatcctttgtcgatt
caggacatctctgtcatcgtgttctactgctgccacgcatatcacacgtcttgcctcgaa
ggcgggttggacttgatgaaatcgaacagtagtactcaggacagcgacgaggatgatgaa
ggtaccccatcaggcgagtctcgaatgcgctgtgtattgtgtactacagctgctgcataa

KEGG   Oryza sativa japonica (Japanese rice): 4335201
Entry
4335201           CDS       T01015                                 
Name
(RefSeq) vacuolar protein-sorting-associated protein 33 homolog isoform X1
  KO
K20182  vacuolar protein sorting-associated protein 33A
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    4335201
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4335201
Membrane trafficking [BR:osa04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    4335201
   Hops complex
    4335201
SSDB
Motif
Pfam: Sec1 Pribosyltran Peptidase_C97
Other DBs
NCBI-GeneID: 4335201
NCBI-ProteinID: XP_015637033
UniProt: Q0JEQ3 A0A0P0W7N8
LinkDB
Position
4:complement(join(8321766..8321867,8322474..8322561,8323858..8323925,8324002..8324059,8324966..8325046,8326072..8326142,8326248..8326329,8328431..8328553,8329127..8329233,8329305..8329367,8329981..8330040,8330204..8330255,8332038..8332132,8332797..8332853,8333066..8333110,8333187..8333294,8334251..8334316,8334486..8334596,8336945..8337139,8337523..8337603,8337695..8337734,8337868..8337920))
AA seq 601 aa
MAQIPNLDNAPLNLAALREQSQKDLLNILKSIRGKKCVVIDPKLAGTLSLILQTSLLKEY
GAELRLLSAEPLQTECAKILYLVRSELKFMKLIASQIKNDEPKGLQREFFLYFVPRRTVA
CEKILEEEKVHQKLTLGEYPLYLVPLDEDVICFELDHSLQECLIEGDTSSVWHVAKAIHK
LEFAFGVIPNVRAKGVASTKAAELLNSMQQEDPVNMDDMGTPEINTVILLDREVDLVTPM
CSQLTYEGLLDEMLQINNGSVEVDATIMGAQQDGKKVKVPLNSSDKLYKEIRDLNFEVVV
QVLRQKATSIQQDYAEVKSTNTQSVSELKDFVKRLHSLPEIARHVHLAQHLQSFTGKPSF
HARLDIEQTILEVQNFEICFEYIEEMIHKQEPIENVLRLLVLLSLTNAGLPKKNFDYLRR
EILHSYGFEHMPLLYNLEKAGLFKRQESRSNWIGITRALQLIVDVNDTANPSDISYIFSG
YAPLSIRLVQHAVRSGWRSIEELLKLLPGPHLDLKRGSSAINSSLDVHQGLGLQQSIDRV
GHRSLVLVVFIGGVTFAEIAALRFLSSQEGMGYDFLVATTKVVNGNTILRPIITNSKEVM
I
NT seq 1806 nt   +upstreamnt  +downstreamnt
atggctcagatccccaatctcgacaatgctcctctcaatctcgcggccctcagggagcag
tcgcagaaggacctgctaaacatcctcaagagtattagggggaagaagtgtgtagttatt
gatcccaagctcgcgggtaccctgtctctgattctgcagacctcactgctaaaggaatat
ggtgcagagttgcggcttctctctgctgaacccctccaaactgagtgcgctaagatccta
tatctcgtacgctctgagctgaagttcatgaaattaattgcaagccagattaagaacgat
gagcctaaagggcttcagagggaattctttctttactttgtgccacggcgcacagttgcc
tgcgaaaagattctggaggaggaaaaagttcatcagaaattgacactcggagagtacccc
ttgtatctagttccattggatgaagatgtgatttgttttgaacttgatcattctctgcag
gaatgccttattgaaggggatactagttctgtttggcatgttgcaaaagctatccataag
ttagagtttgcctttggagtaattcccaatgttcgggccaagggtgttgcatccaccaaa
gccgcagagttgctgaatagtatgcaacaggaagatcctgtcaacatggatgatatgggg
actccggagataaacactgttattttgttagacagagaggtggatttagtgacaccgatg
tgctctcagttgacatatgaaggtttattagatgagatgttgcaaataaacaatggatct
gtggaggttgatgccactattatgggagcccaacaagatggtaaaaaagttaaagttcca
ctgaattcaagtgataagttgtacaaggaaattcgagatctcaattttgaagttgtagtt
caggtcttgcgccaaaaggcaacatctattcagcaagattacgccgaagtaaaatccacc
aatactcaatcggtttcggagctgaaggactttgtgaagaggttacattcactgccagag
atagctaggcatgttcatttggcacaacacttgcaatcatttactggaaaaccttccttt
catgcccgattagacattgaacaaacaatattggaggtgcaaaactttgaaatatgtttt
gaatacattgaagagatgatacataagcaggagcctattgaaaatgttcttcgccttcta
gtgttactttcacttacaaatgctgggttgccaaagaagaattttgactacttgaggcgg
gaaatactgcacagttatggctttgagcacatgcccttgttatacaatctggaaaaggct
ggcctatttaagcgccaggaatcaagaagtaactggattggtattacaagggctctacag
cttatagttgatgtaaatgatactgcaaaccctagtgatatatcatacatattttctgga
tacgcccctctcagtattcgccttgttcagcatgctgtgagatctggatggcgatctatt
gaagaactgttgaaactattgccaggtcctcatctggatttgaaaagaggtagttcggcc
attaattcttcattggatgtacaccaaggtttggggcttcaacagagtattgacagggtt
ggacatcgttctctggttttggttgtctttattggtggggttacttttgcagagattgct
gctcttcgattccttagttctcaggaagggatgggctatgacttccttgttgcgaccaca
aaggttgtcaatgggaacacaatactcaggccaattataaccaatagcaaagaggtgatg
atatag

KEGG   Oryza sativa japonica (Japanese rice): 4335642
Entry
4335642           CDS       T01015                                 
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog isoform X1
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    4335642
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4335642
Membrane trafficking [BR:osa04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    4335642
   Hops complex
    4335642
SSDB
Motif
Pfam: Clathrin VPS11_C zf-C3H2C3 zf-C3HC4_2 zf-rbx1
Other DBs
NCBI-GeneID: 4335642
NCBI-ProteinID: XP_015636902
UniProt: B9FEU4 Q7XVC4
LinkDB
Position
4:join(19125314..19125532,19126013..19126186,19126281..19126595,19127329..19129107,19129872..19130228)
AA seq 947 aa
MYQWRKFEFFEEKAAGRGVPGEIASRVSCCSGGRGRVAVGCDDGTVGLLDRGFRLSYGFQ
AYASSVLFLQQLKQRNVLITVGDDDQPSSLSSAICLKVFDLDKVQEEGSSTTSPFCVQIL
RIFTKQFPQAKITSFVVLEEAPPILLIAIGLDNGSIYCIKGDIARERITRFMLQVEDGTS
LPITGLGFRVEGQAHQLFAVTPSSITLFSLHDHPPRRQTLDQIGCETNAVAMSDRMDLII
GRPEAVYFYEIDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRSRKNTLNVYDLKNRLIAH
SMPVGDVSHLVSEWGYIILIMSDKKILCIGEKDMESKLDMLFKKNLYTVAINLVQSQQAD
PASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSYVIQKFLDAKRIYNLTNYLEKL
HDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDEDGVGEIKFDVETAIRVCRAAGYHEHA
MFVAKKAGRHELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVE
ILLRLCTDGGDPMTRRGSNSMHLLMIPSPMDFVNIFVHSPKHLMEFLENYTKAVKDSPAQ
TEIHNTLLELYISKDLSFPSMSQENGFEEQNSKERKGKEVANGYKSGPREKGNLGKEDMN
VAKDIVDRQRKGLALLKSAWTSEMDDPLYDVDLALIICNANAFKDGLLFLYEKLKLFKEV
ISCYKQAHDHEGLIACCKKLGDSSQGGDPSLWGDLLKYFSELGEDCSKEVKEVLTYIEKE
DVLPPIVVLETLSKNPCLTLSVVKDYIARKLEQESKLIEEDRKSIDKYQDETELMKREIE
DLKTNAKVFQLSKCTTCTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVMEAK
QKLEHNARDHDLFFRQLRGSKDGFSVVADYFSKGIVSKTAIPPENGR
NT seq 2844 nt   +upstreamnt  +downstreamnt
atgtaccagtggcgcaagttcgagttcttcgaggagaaggcggccgggcggggcgtgccc
ggcgagatcgcctcccgcgtcagctgctgctccggcggccgcggccgcgtcgccgtcggc
tgcgacgacggcacggtggggctccttgaccgcgggttccgcctctcctacggcttccag
gcctacgcctcctccgtcctcttcctccagcagctcaagcaaaggaatgttcttatcacg
gttggcgatgatgatcagccatcttcactatcgtcagcaatctgtctaaaagttttcgat
cttgataaagtacaagaagaaggttcaagtacaacaagtcctttctgtgttcaaattttg
cgcatcttcactaagcaatttcctcaggcaaagattacatcttttgtggttctagaagaa
gcacctcctatactgctaattgcgattggactggacaatggttccatttattgcatcaaa
ggtgacatcgcacgtgagcgtatcacgcgattcatgttgcaagtcgaggatggcaccagt
ttacctattactggtcttggtttccgagttgaggggcaagcacaccagttatttgctgta
actcctagttcaataaccttgtttagcttgcatgatcatccaccgaggaggcaaacgctt
gatcagattggttgtgagaccaatgctgtggcgatgagtgaccgcatggatctgattatt
ggtagacctgaagctgtgtatttctatgaaattgatggtagaggtccttgctgggccttt
gatggtgagaaaaagtttgttggatggtttcggggctatttactatgcattattgaagat
cagaggagccggaagaatactcttaatgtatatgatcttaagaatcggttgattgcacat
agcatgccagtgggggatgtttcacacttggtctctgagtggggatatattattctgata
atgagcgataaaaagattctttgcattggagagaaagatatggagagtaagcttgatatg
ttgtttaagaaaaatctgtatacagtcgcaatcaatcttgtacaaagtcaacaggccgat
cctgcttcaactgctgaggttctaaggaagtatggtgaccatctctatggaaaacaggaa
tatgatgaggccatgtcccaatatatccacaccattggccatcttgaaccatcatatgtt
atacagaagttccttgatgcaaaacgcatctacaatctcacaaactatttagagaagtta
catgatcgagggttagcatccaaagaccacaccacccttctgttgaattgctatactaaa
ctgaaagatgtggagaagcttaaccatttcatcaaagatgaagatggggtaggtgaaatc
aagtttgatgtggaaactgccataagagtatgtcgtgcagctggatatcatgagcatgct
atgtttgttgccaaaaaggctgggaggcatgagttgtatttgaaaattttactggaggat
cttggtagatatgatgaggcactgcagtatatatctagccttgaggcgaatcaagcaggt
cttactgtaaaagagtatgggaaaattcttgtggagcatagacctgctgaaacagttgaa
atactgttgagactctgtacagatggtggagatcctatgacaagaagaggttcaaatagc
atgcatttgcttatgataccttctccaatggactttgtaaacatatttgtacacagcccg
aaacatctcatggaatttctagagaattataccaaagcagtaaaggactcacctgctcaa
acagaaattcataacacccttctggagttatatatatcaaaagatttaagtttcccttct
atgtcacaagaaaatggctttgaggagcagaatagtaaggaaagaaaaggtaaagaagtt
gcaaatggctataaatctggcccaagggagaaaggaaatctgggaaaggaagatatgaat
gtcgcaaaggatattgttgataggcaaaggaaagggcttgcattgctcaagtctgcatgg
acatctgagatggatgatcctctgtatgatgttgatcttgctcttatcatctgtaatgca
aatgcattcaaagatgggctattgtttctgtatgagaaactaaaactattcaaagaagtt
attagttgctacaagcaagctcatgatcacgagggtctaattgcctgctgtaagaagcta
ggagattcatctcaaggtggggatccatctctttggggtgatctgttgaaatattttagt
gagcttggggaagattgctctaaagaggtcaaggaggtattgacctatattgaaaaggag
gatgttttgcctcctattgttgtgctagagacattgtcgaaaaacccatgcttgacactg
tcagttgtcaaggattacattgcccgcaaacttgagcaagaatcaaagctaatcgaagaa
gataggaaatctattgacaagtaccaggatgagacagaactgatgaaaagggagatagaa
gacctcaagacaaacgcaaaggtctttcagcttagcaagtgtacgacgtgcacctttacg
cttgaccttcctgcggtccacttcatgtgcatgcactccttccaccttcgctgccttggg
gacaatgagaaagaatgcccagaatgtgctcccgaatatagatctgtcatggaggcaaag
cagaagctagaacataacgctagagaccatgatctcttcttcaggcagctgaggggttca
aaggatggcttctctgtcgtcgcagactattttagcaagggcattgtgagtaaaacagcc
attcctcctgaaaatggccgataa

KEGG   Oryza sativa japonica (Japanese rice): 4344807
Entry
4344807           CDS       T01015                                 
Name
(RefSeq) vacuolar sorting protein 18
  KO
K20181  vacuolar protein sorting-associated protein 18
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    4344807
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4344807
Membrane trafficking [BR:osa04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    4344807
   Hops complex
    4344807
SSDB
Motif
Pfam: Pep3_Vps18 Clathrin Nup54_57_C Vps39_2 zf-RING_11 zf-RING_UBOX zf-C3HC4 zf-rbx1 zf-RING_2 zf-RING_5
Other DBs
NCBI-GeneID: 4344807
NCBI-ProteinID: NP_001409383
LinkDB
Position
8:join(4620783..4620966,4621050..4621262,4621378..4621517,4621623..4621718,4622120..4622187,4622583..4622684,4623533..4623671,4623799..4623939,4624024..4624143,4624282..4624338,4624441..4624500,4624907..4625014,4625875..4626035,4626494..4626572,4627170..4627232,4627398..4627531,4627887..4627992,4628285..4628473,4628636..4628863,4629069..4629224,4629532..4629696,4629793..4629909,4629986..4630162)
AA seq 1000 aa
MDAAAAAFAPGGQLFSVDPLERHAARGHGVVTSMAAGSDVIVLGTSRGWLVRHDFSFEDA
HDLDLGTGRSGEHSVHRVFLDPGGKHCVATVVHPGGAETYYHHARWPRPKLLPRLRNVLV
NAVAWNRQTITEASTKEVILGTEDGQIFEIAVDEADKKEKYVKSLFTLSELQEGIKGLQM
ETAVVGNATRFYVMAVTPTRLYSFTGIGSLETVFASYSDRAIHFMELPGDIPNSELHFFI
KQRRAKHFGWLSGAGIYHGELNFGAQHSSTSGDENFVENKGFFDYSKLGESGIKPRSFAL
SEFHFLLLIRDKIKVVNRISQQIVEELIVDSSPEVTKGIIGLCSDASTGLFYAYDENSIF
QISSSDEGRDMWQVYLDMKEYATALSHCRNSFQRDQVYLVQADTAFNTKEYYIAASFYAK
MNYILSFEEISLKFISVGEQDALRTFLLRRLDNLTKDDRMQITMISTWATELYLDKINRL
LLEDGTGATSNAVADSKDSEYRSIVNEFRAFLSDSKDVLDEATTMRLLESYGRVDELVYF
AGLKEQHEIVVHHYIQQGEARKALEVLQRHNVLVDLVYKFAPDLIMLDAYETVESWMMAR
NKLNPGKLIPAMMRYVSEPHAKNETHEVIKYLEFCVKDLNNEDPGVHNLLLSLYAKKDDE
SQLLQFLDTKFGKGQTNGPEFFYDPKYALRLCLQEKRMRACVRIYSMMSMHEEAVALALT
VDLELAKAEADKVEDDEELRKKLWLKVAKHVIEQEKGVKRENIKKAIEFLSETNNLLKIE
DILPFFPDFVLIDDFKEEICKSLKDYDSQIDQLKQEMDDATRGADNIRSDIGALAQRYTV
IDREEECGVCKRKILTAGGLHQVGRSYTSTGHMAPFYVFPCGHAFHANCLIAHVTRCNSS
QTQAEKILDLQKRLSLMDRKAAKENGGNMNGESIISATPIDKLRSQLDDAVASECPFCGD
LMIKEISLPFILPEESDEKASWEIKPQPTGQKILPMTMSI
NT seq 3003 nt   +upstreamnt  +downstreamnt
atggacgccgccgccgccgccttcgcccccggcgggcagctcttctccgtcgatcccctc
gagcggcacgcggcgaggggccatggcgtggtcacctccatggctgccggcagcgacgtc
atcgtcctcggcacctcccgcggatggctcgtccgccacgacttctccttcgaggacgcc
catgatctcgacctcgggaccggccgctccggcgagcactccgtgcaccgcgtcttcctc
gaccccggcgggaagcactgcgtcgccacggtggtccacccggggggcgccgagacgtac
taccaccacgccaggtggccgcgccccaagctgctcccccgcctccgcaacgtcctcgtc
aatgccgtcgcgtggaaccgccaaaccatcaccgaagcgtcgaccaaggaggtgatcctg
gggacagaggatgggcagatcttcgagattgcagtagacgaggccgacaagaaggagaag
tatgtgaagtcgctctttacgctctctgagctgcaggagggcatcaagggcctgcagatg
gaaaccgccgtggttgggaacgccacaaggttctatgtgatggctgtcacaccaacacgg
ttgtactcattcacgggcatcggttcattagaaactgtttttgctagctattctgatcgt
gcgatacactttatggagctcccaggagatattccaaatagtgaattacatttctttatc
aagcaaagaagggctaagcattttggatggctttctggagctggaatttaccatggtgaa
ctgaattttggagctcaacacagctctacaagtggggatgagaactttgtcgaaaataaa
ggtttttttgactactcaaaattgggagaatctggtatcaagccaaggtcatttgcattg
tctgaattccattttctgcttctcatcagggacaagattaaggtagtgaacagaatcagc
cagcaaatagtggaggaacttatagtcgatagttcaccagaagttacaaaaggaataatt
ggactttgtagtgatgcatcaactgggcttttctatgcatacgatgaaaattctatattc
cagatttcatcatctgatgagggtcgtgatatgtggcaagtatacctggacatgaaagaa
tatgctacggcactgtcacattgtcgtaactccttccagagggaccaagtctatctagtg
caggctgatactgcattcaatacaaaagagtactatatagcagcttccttctatgcaaag
atgaattatatcctatcatttgaggagatcagcttaaaatttatatctgttggtgagcag
gatgctctcaggactttcttgttgagaaggcttgataacctaacgaaagatgacagaatg
cagattacaatgatctcaacttgggctactgagctgtacttggacaagattaatcgcctc
ctgttggaagatggcacaggagccacgtcaaatgctgtagcagattctaaagactcggaa
tatcgttcaatagtaaatgaattccgtgcttttctaagtgatagcaaagatgtattagat
gaggcaacaacaatgagactgttggaaagttatgggagagtggatgagctggtttatttt
gctggtttaaaggagcaacatgaaattgtggttcatcattacattcagcaaggagaagca
agaaaggcattggaagttcttcagcgacataatgttctagtagaccttgtgtataaattt
gctccagatttaatcatgttagatgcttatgaaactgttgaatcatggatgatggcaaga
aataagttgaatccagggaagcttataccggcaatgatgcgttatgtgagcgaaccacat
gccaagaatgaaacacatgaagttatcaagtacttggaattctgtgtaaaagatttgaac
aatgaggatcctggagtgcataatttgttgctctcactgtatgccaagaaggacgatgag
tctcagcttttgcaattcttggacactaagtttggtaaaggacagacaaatggccctgag
ttcttttacgaccccaaatatgctctgcgtctatgtcttcaagagaagagaatgcgtgct
tgtgttcgtatttacagcatgatgtccatgcatgaagaagctgttgcacttgcattaacg
gtggacttagagcttgcaaaagcagaagcagataaagttgaagatgatgaagaacttaga
aagaagctgtggcttaaggttgcaaagcatgtcattgagcaagagaagggagtcaagagg
gagaacataaagaaagctatagaattcctatcagagactaacaacttgttgaagattgag
gatatcctgccatttttcccagacttcgtattgatcgatgactttaaagaggaaatatgc
aaatctctcaaggactatgacagccaaatcgatcagctgaaacaggagatggatgatgct
actcgtggggcagacaacatcagaagtgatattggtgcccttgctcagagatacactgta
attgatcgtgaggaggaatgtggggtgtgcaagcgcaaaatattgactgctggaggactg
caccaggtaggaagaagctacacatctaccggacacatggcccccttttatgtgtttcct
tgtggacatgcctttcatgcgaattgtttgatcgcacatgtaactcgttgtaatagcagc
caaacacaagctgaaaaaatactggacctccaaaagcggcttagcctaatggacaggaaa
gcagcaaaggaaaatggcggaaacatgaatggtgaatctattatcagtgcgacaccaatt
gacaagttgaggtcccagctggatgatgctgtagcgagcgagtgccccttctgcggcgat
ctgatgatcaaggagatttcattgcctttcattctccctgaagagtctgatgaaaaggct
tcgtgggaaattaaaccgcaaccaacgggtcagaaaattcttccaatgaccatgtctata
tga

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