Oryza sativa japonica (Japanese rice): 4327845
Help
Entry
4327845 CDS
T01015
Name
(RefSeq) sphingosine kinase 2 isoform X2
KO
K04718
sphingosine kinase [EC:
2.7.1.91
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00600
Sphingolipid metabolism
osa01100
Metabolic pathways
osa04148
Efferocytosis
Module
osa_M00100
Sphingosine degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
4327845
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
4327845
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.91 sphingosine kinase
4327845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAGK_cat
YegS_C
CERK_C
Motif
Other DBs
NCBI-GeneID:
4327845
NCBI-ProteinID:
XP_015646411
UniProt:
Q0JIR8
A0A0P0V906
LinkDB
All DBs
Position
1:complement(join(33751969..33752166,33752334..33752456,33755106..33755381,33755966..33756036,33756130..33756207,33756310..33756396,33756481..33756553,33757364..33757464,33757578..33757700,33757882..33758275))
Genome browser
AA seq
507 aa
AA seq
DB search
MGDHRATAKVRVNGAPAEATLFCTDPPGAANGGGGDGGELRWRCAGGAAAERVLSLDADV
LGVEARGKEVVVKAFVLPADAAARSVSCAAGAGKGGGGRRRRRRDYVFEMAAGEDAAAAW
CDRMRGSLDSLGRPKRLFILVNPFGGKKCGKKIYEAEIKPLFEAAGVNVTMQETRYQGHA
RQVASSLDLARYDGIVCVSGDGVLVEVVNGILQRMDWEEAMKIPIGVVPAGTGNGMAKSL
LHSASKTYSVPNAVFAIIRGYSQSLDVCTIVQGRKKFFSVLNMTWGLVADIDIESEKYRW
MGSARFDFYALVRIMNLRKYYGSIQYVPAPGYEAYGDVVKQVENCTVECQEQIGKSLCSY
QGPSVEFQGSEWRSLDGPFVSIWINNVQWAAESIMAAPGAKFSDGYMDAVIVRDCPKADL
LALLMKMGDGSHVKSPYVTYLKVRCLRLSPGQLVENPKRGGIIDVDGEAIARGEGTYGKN
QKQDVMGYGPSIQMTVHRALATMYCPK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgggagaccaccgcgccacggccaaggtccgcgtgaacggcgcgccggcagaagcgacg
ctcttctgcaccgacccgccgggtgcagctaatggcggcggcggagatggaggggagctc
cggtggcggtgcgctggtggcgccgcggcggagcgcgtgctgtcgctggacgcggacgtg
ctcggggtcgaggccaggggtaaggaggtggtcgtgaaggccttcgtgctgccggcggac
gcggcggccaggtcggtgtcctgcgccgcgggtgcggggaagggaggaggaggacggagg
aggcgcaggagggattacgtgttcgagatggccgccggcgaggacgccgccgcggcctgg
tgcgacaggatgaggggctccctggactctctcggccggcctaagagattgttcatcctg
gtcaaccccttcggcggcaaaaaatgcggaaagaagatttacgaggcagagatcaagccc
ctgttcgaggccgccggtgtcaacgtcacaatgcaagagacccggtatcaggggcacgcc
cggcaggtggcgtcttctcttgaccttgcgcgctacgatggcattgtctgtgtcagcggc
gatggtgtcctcgtggaggtagtaaatggaattctacaacgaatggattgggaggaagcg
atgaagataccgattggggtggttccagcaggtacaggaaatggcatggctaaatcgctg
ttgcattctgccagtaagacatactcggttccaaatgccgtatttgccattatcagaggt
tacagtcagtccttggatgtatgcaccattgtgcagggaaggaagaaatttttcagtgtc
ttgaatatgacttggggtttggtggctgatatagatattgagtctgagaagtacaggtgg
atgggaagtgcacgctttgatttctatgctttggttcgcataatgaacttgagaaaatac
tacggaagtattcagtatgttcctgcccccggctatgaggcatatggagatgtcgtcaag
caggttgagaattgcactgtagaatgccaagaacagattgggaagtctttgtgttcttat
caaggtccttccgttgagtttcaaggttcagaatggagatcccttgatggtccatttgtg
tctatttggatcaacaacgtgcaatgggctgctgagagtatcatggcagctcctggggcc
aagttctcagatggctacatggatgcagtcatagtcagggactgtccaaaggctgatctt
ttagccctactgatgaagatgggcgatgggagtcatgtaaaatcaccatacgttacgtat
ctaaaggtgagatgtcttcggttatcaccaggccagcttgtggagaatccaaaacgaggt
ggcataatagacgtggacggggaggctatcgctagaggagaaggaacgtacggcaaaaac
cagaaacaggacgtgatgggttatggcccttccattcagatgacagtgcaccgagcgttg
gccacaatgtattgtcccaaatga
Oryza sativa japonica (Japanese rice): 4343607
Help
Entry
4343607 CDS
T01015
Name
(RefSeq) sphingosine kinase 1
KO
K04718
sphingosine kinase [EC:
2.7.1.91
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00600
Sphingolipid metabolism
osa01100
Metabolic pathways
osa04148
Efferocytosis
Module
osa_M00100
Sphingosine degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09103 Lipid metabolism
00600 Sphingolipid metabolism
4343607
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
4343607
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.91 sphingosine kinase
4343607
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAGK_cat
YegS_C
CERK_C
MLTR_LBD
Motif
Other DBs
NCBI-GeneID:
4343607
NCBI-ProteinID:
XP_015647921
LinkDB
All DBs
Position
7:join(22742561..22742945,22744640..22744762,22744860..22744960,22745103..22745175,22745423..22745509,22745645..22745722,22745869..22745939,22746413..22746715,22747054..22747176,22747413..22747610)
Genome browser
AA seq
513 aa
AA seq
DB search
MAEEQSKAQAGAKALSEPVRVGGSAAEATLSGGELAWRPTGGGGGGGEAGRLELESEVLG
VRVDGRALRVATFARGDDAAAAAARPATCGGGERRREREREREVVVEMESEEAAAAWGDA
MRDRLASLGRPKRLFIIVNPYGGKRGGRKIFQTEVLPLIEAAGILYTMQETKHRLHAQEI
AHSLDLRKYDGIVCVSGDGVLVEVVNGLLQREDWNTAIKIPLGIIPAGTGNGMVQSLVHF
AGESFSVYNAVLAIIRGHKRPLDVTSVVQGKTRFFSVLMLTWGLVADIDIESEKYRWMGS
ARLDFYSLLRVVSLRRYNGRVLFVPAPGYEGLGDLVEQISSCKSNGASTGVQEDRSNDFN
DETCAYAGPSIDETDHEWRSLDGPFVSVWVSGVPFASENVMTAPEAKFGDGYLDVAIIKD
CPRSALAGLMFQMKDGSYVKSPYVEYFKVKALRIEPGMRVGSTTKGGIIDSDGEVIARGD
GSHTGDEIEHLMAYGPPIQLTVDQGLATIFSPR
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagcagtccaaggcccaggcgggggcgaaggccctgtcggagccggtgcgg
gtcggggggtccgcggcggaggccacgctctccggcggggagctggcgtggcgccccacg
ggaggcggcgggggaggaggggaggcggggaggctggagctggagtccgaggtgctcggg
gtccgggtggacgggagggcgctcagggtcgcgaccttcgcgaggggcgacgacgcggcg
gcggcggcggcgcggccggcgacgtgcgggggcggggagaggaggagggagagggagagg
gagagggaggtggtggtggagatggagagcgaggaggccgccgcggcgtggggggacgcc
atgagagatcgcctcgcctcgcttggtcggccaaagagattgttcatcatagttaaccct
tatggtggaaagagaggtgggcggaagattttccagactgaggtcctacctctcattgaa
gctgctggcatcctttacaccatgcaagaaaccaagcatcggcttcacgctcaagaaatt
gctcattcactggatcttaggaaatatgatggaattgtttgcgtcagtggagatggtgta
cttgtagaggtggttaatggtctgctgcaaagagaggactggaacacagcaataaaaata
ccattaggcatcatcccggcaggtaccggaaatggaatggtgcaatcacttgtgcatttt
gctggtgaatccttctccgtttataacgctgtgcttgcaattatcagaggtcacaagcgt
ccccttgatgttacctctgttgtgcagggaaagacaaggttttttagtgtcttgatgctt
acttggggtctggtagctgatatcgatattgagtcagagaagtacaggtggatgggcagt
gctcgtcttgacttctattcccttctccgtgtggtgagcttgcggcggtacaatgggcgt
gttctttttgttccagccccaggatacgaaggacttggtgatcttgtagagcaaattagc
agttgcaaatcaaatggggctagcactggtgtacaagaggacagatcaaatgattttaat
gacgaaacatgtgcttacgcaggcccttcaattgatgaaactgatcatgagtggagatca
ctggatggcccatttgtttcggtttgggtcagtggtgttccttttgctagtgaaaatgtc
atgacagcaccagaagcaaagtttggagatggctacttggatgtagccataatcaaggac
tgccctaggtcggctcttgctgggctgatgtttcagatgaaggatggcagctatgtcaaa
tccccctatgtggagtacttcaaggtgaaggctctcaggattgagccgggaatgcgggtg
ggcagcaccaccaagggcggcatcatcgactccgatggcgaggtgatcgcgagaggggat
ggatcacacactggcgacgagatagagcacctgatggcctatggccctcccatccaactg
acggtggatcagggcttggccaccattttctcccctagatga
DBGET
integrated database retrieval system
