KEGG   Oryza sativa japonica (Japanese rice): 4327960
Entry
4327960           CDS       T01015                                 
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    4327960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4327960
Enzymes [BR:osa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     4327960
DNA repair and recombination proteins [BR:osa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     4327960
SSDB
Motif
Pfam: Exo_endo_phos SAP Rho_N Exo_endo_phos_2 Thiored_Isochorism
Other DBs
NCBI-GeneID: 4327960
NCBI-ProteinID: XP_015625662
UniProt: Q5VQJ9 A0A8J8Y9G5
LinkDB
Position
1:join(34526248..34526291,34526720..34526876,34526967..34527064,34527155..34527219,34527935..34528156,34528253..34528506,34528662..34528772,34528927..34529064,34529149..34529196,34529803..34529883,34530180..34530339,34530886..34531007)
AA seq 499 aa
MPLLLRGGSLFRLYGCGCGLPSANFSPSKLALIRLSLMMAETRATYSRRAASKNTDIKKD
DEHVLEKEDVAESKLEIEQLRNDPDRLQSMTVKELREITRMMGIPVKGNKKDLVSALMDS
LGKVGTSSVEKIGVSEVPSKRKGASVVVEQNIDSSEVISETPSKRSRAKNKGTAEESSGA
NVKQSKTSVQKKKLVVQGASVDHEEPWTVLVHKKPQPAWIPYNPKVMRSPSLSKDTKALK
ILSWNVNGLKALLKSRGFSIHQLAQREDFDILCLQETKMQEKDVEVIKEGLLEGYTHSFW
TCSVSKLGYSGTAIISRVKPLSIKYGLGVPDHDTEGRVVTVEFNDFYLLTAYVPNSGDGL
KRLTYRVTEWDPSLGNYMKDLEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEERE
SFETNFLSKGFVDTFRKQHPNVVGYSYWGYRHNARKTNKGWRLDYFLVSESIAERVHDSY
IIPDISASDHSPLGLVLKL
NT seq 1500 nt   +upstreamnt  +downstreamnt
atgccgctgctcctgcgcggcggctccctcttccgtctctacgggtgtggctgtgggctt
ccaagcgcaaatttcagtcccagcaaactagcactgataagactaagcttgatgatggca
gaaacacgagccacctattcgcgtcgagctgcctctaagaatactgatatcaagaaagat
gatgaacatgtccttgaaaaggaggatgttgctgaaagcaaattggagatagagcaactt
aggaatgaccccgatcgactccaatccatgacagtgaaggagctcagggaaatcacgagg
atgatgggaattcctgtaaaaggcaacaagaaagatttggtatcagccctgatggattct
ctgggtaaagtgggaacttcatcagttgagaagattggtgtgtctgaagtaccttcaaaa
agaaaaggtgcttcagtagtagttgaacaaaacatagatagttctgaggtcatttctgaa
actcctagtaagagaagtagagcaaagaacaaaggaaccgctgaggagagttctggggct
aatgtcaagcaaagcaagacatcagtccagaagaaaaagctagttgtccaaggtgccagt
gtggaccatgaagaaccttggactgtacttgtacacaagaaaccacaacctgcctggatt
ccttataatcctaaggtcatgaggtctccatctcttagcaaggatacgaaggctctaaag
attctgtcatggaatgtgaatggattaaaagctttacttaaatcgaggggcttctctatt
catcagttagctcagagggaggacttcgatatactatgcctacaagagacaaaaatgcag
gagaaggatgtagaagtcattaaggaaggtctacttgaaggctatacccatagtttctgg
acatgcagtgtatcaaagcttggctattcggggactgcaataatttcaagggtgaaacca
ctctctatcaagtacgggcttggtgtgccagaccatgatactgaagggagggtcgtcaca
gtggagttcaatgatttttacctcctgactgcttatgtaccaaattctggtgatggtcta
aaaagattgacttacagggtcacagaatgggatccaagccttggtaactacatgaaagac
ttggaaaaatcgaagcctgttatactaactggtgatcttaactgtgcccatcaagagatt
gatatacatgatcctgctggaaatcgtagaagtgcaggctttacaattgaagaaagggaa
tcattcgagactaattttttgtccaaaggttttgttgatacatttcgaaaacagcatccc
aatgttgttggatatagttactggggttataggcataatgcccggaagaccaacaaaggt
tggcgtctggattattttcttgtgtctgaatccattgcagaaagagtccatgattcatac
attattccagacatatctgccagtgatcacagcccgctaggcctcgtactgaagctctag

KEGG   Oryza sativa japonica (Japanese rice): 4327961
Entry
4327961           CDS       T01015                                 
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic isoform X1
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    4327961
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4327961
Enzymes [BR:osa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     4327961
DNA repair and recombination proteins [BR:osa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     4327961
SSDB
Motif
Pfam: Exo_endo_phos Exo_endo_phos_2 COMM_domain
Other DBs
NCBI-GeneID: 4327961
NCBI-ProteinID: XP_015627423
LinkDB
Position
1:join(34533436..34533467,34534059..34534377,34534553..34534657,34534782..34534919,34535017..34535064,34535234..34535314,34535459..34535612,34536128..34536249)
AA seq 332 aa
MSAIRASSHRLQTRTVALTRTKMSSMAGLGASQHGYPPRSHEPWTKLVHRERLPEWFAYN
PKTMRPPPLSHDTKCMKILSWNINGLHDVVTTKGFSARDLAQRENFDVLCLQETHLEEKD
VEKFKNLIADYDSYWSCSVSRLGYSGTAVISRVKPISVQYGIGIREHDHEGRVITLEFDG
FYLVNAYVPNSGRFLRRLNYRVNNWDPCFSNYVKILEKSKPVIVAGDLNCARQSIDIHNP
PAKTKSAGFTIEERESFETNFSSKGLVDTFRKQHPNAVGYTFWGENQRITNKGWRLDYFL
ASESITDKVHDSYILPDVSFSDHSPIGLVLKL
NT seq 999 nt   +upstreamnt  +downstreamnt
atgtcggcgatccgcgcctcttctcaccggctgcagacaagaactgtggcattaacaagg
acaaagatgtcaagcatggcaggcttgggagcttctcagcatggatatcctccccgaagt
catgagccctggactaaacttgtacacagagagagattacccgagtggtttgcatacaat
ccaaagaccatgaggcctccaccacttagccatgataccaagtgcatgaagattttatcc
tggaatattaacgggcttcatgatgttgtaacgacaaaggggttttctgcacgtgacttg
gctcagagagagaattttgatgtgttatgtcttcaagagacacatttggaggaaaaggat
gttgaaaagtttaagaatctgatagcagactatgacagctattggtcatgcagcgtctcg
aggcttggctattcagggactgcagtaatttcacgggttaaaccaatttctgtccaatac
gggattggcatacgtgaacatgatcatgagggcagggttattactctggagtttgatggt
ttttacttggtaaatgcctatgttccaaattctggtcgttttctacgtagactgaattac
agggtcaataactgggatccgtgtttcagcaactatgtaaaaatactggaaaagtcgaaa
ccagtgattgttgcaggagaccttaactgtgctcgtcaaagcattgacattcacaatcct
ccagcaaaaaccaagtctgcaggtttcacaattgaagagagagagtcatttgagacaaac
ttttctagcaaaggccttgtggatactttcagaaaacagcaccctaatgctgtcggctat
accttctggggtgaaaatcagcgcataaccaacaaaggttggcgattagattactttctt
gcgtcggaatctattaccgacaaggttcatgattcatacattcttcctgatgtatcattc
agcgaccacagtccaattggcctggtactgaagctatag

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