Oryza sativa japonica (Japanese rice): 4328024
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Entry
4328024 CDS
T01015
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4328024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4328024
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
4328024
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
4328024
Complex C
U5 SnRNP specific factors
4328024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_25
Motif
Other DBs
NCBI-GeneID:
4328024
NCBI-ProteinID:
XP_015625183
LinkDB
All DBs
Position
2:join(417179..417898,417999..420251,421004..421393,421501..424671)
Genome browser
AA seq
2177 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLWGRIDPRSFGDRAV
QAKPPELEEKLTKSRKKKAAAADPDDLHRRDAKRRRRAAAAQREVSVLSLTDDVVYKPQT
KETRAAYEALLSVIQQQFGGQPLDVLGGAADEVLAVLKNDKIKSPDKKKEIEKLLNPISN
QMFDQIVSIGKLITDFHDASAGDSAAAPSGDGMDTALDDDIGVAVEFEENEDDEESDFDQ
VQDDLDEDEDDDLPESNAPGAMQMGGELDDDDMQNSNEGLTINVQDIDAYWLQRKVSQAY
EDIDPQHSQKLAEEILKIIAEGDDRDVENRLVMLLDYEKFDLIKLLLRNRLKIVWCTRLA
RAEDQEQRKKIEEDMMGNPTLTPILEQLHATRASAKERQKNLEKSIRDEAKRLTKSENTG
IDGARDRRAVDRDMESGWLKGQRQLLDLDSLSFHQGGLLMANKKCELPPGSFRTPHKGYE
EVHVPALKAKPYETGEKIVKISDMPEWAQPAFAKMTQLNRVQSKVYETALFKPDNILLCA
PTGAGKTNVAVLTILQQIGLHMKDGVFDNTKYKIVYVAPMKALVAEVVGNLSARLSAYGI
TVRELSGDQNLTKQQIDETQIIVTTPEKWDIVTRKSGDRTYTQMVKLLIIDEIHLLHDNR
GPVLESIVSRTVRQIETTKEHIRLVGLSATLPNYEDVAVFLRVRSDGLFHFDNSYRPCPL
AQQYIGITVRKPLQRFQLMNEICYEKVMASAGKHQVLIFVHSRKETAKTARAIRDTALAN
DTLNRFLKDDSASQEILGSQAELVKSSDLKDLLPYGFAIHHAGLARVDRELVEELFADKH
IQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTHG
EGIILTGHSELQYYLSLMNQQLPIESQFISRLADQLNAEIVLGTIQNAREACSWLGYTYL
YIRMLRNPTLYGLPADIMETDKTLDERRADLVHSAANLLDRNNLIKYDRKTGYFQVTDLG
RIASYYYISHGTISTYNEYLKPTMGDIELCRLFSLSEEFKYVSVRQDEKMELAKLLDRVP
IPVKESLEEPSAKINVLLQAYISRLKLEGLSLSSDMVYIRQSAGRLLRALFEIVLKRGWA
QLAEKALNLCKMIDKQMWNVQTPLRQFPGIPKEILMKLEKKELAWERYYDLSSQEIGELI
RFPKMGRQLHKCIHQLPKLNLSAHVQPITRTVLGFELTITPDFQWDDKVHGYVEPFWVIV
EDNDGENILHHEYFMVKKQYVDEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTILPVC
FRHLILPEKYAPPTELLDLQPLPVTALRNARYEGLYSAFKHFNPIQTQVFTVLYNTDDSV
LVAAPTGSGKTICAEFAILRNHQKAVSGESNMRVVYIAPIEALAKERYRDWEQKFGEFAR
VVELTGETAADLKLLDKGEIIISTPEKWDALSRRWKQRKQVQQVSLFIVDELHLIGSEKG
HVLEVIVSRMRRIASHIGSNIRIVALSASLANAKDLGEWIGATSHGLFNFPPAVRPVPLE
IHIQGVDIANFEARMQAMTKPTYTAITQHAKNGKPALVFVPTRKHARLTALDLCAYSSAE
GGGTPFLLGSEDEMDAFTGGISDETLKYTLKCGVGYLHEGLSDLEQEVVTQLFLGGRIQV
CVASSTVCWGRSLPAHLVVVMGTQYYDGRENAHTDYPITDLLQMMGHASRPLQDNSGKCV
ILCHAPRKEYYKKFLFEAFPVESHLHHFLHDHMNAEVVVGVIENKQDAVDYLTWTFMYRR
LTKNPNYYNLQGVSHRHLSDHLSELVETVLNDLESSKCVAIEEDMYLKPLNLGLIASYYY
ISYTTIERFSSMLTQKTKMKGLLEILASASEYAELPSRPGEEDFIEKLVRHQRFSIEKPK
YGDPHVKANALLQAHFSRHTILGNLAADQREILLSAHRLLQAMVDVISSNGWLTLALNAM
ELSQMVTQGMWDRDSVLLQLPHFTKELARRCQENEGRPIESIFDLAEMSIDEMRDLLQQS
NPQLQDIIEFFKRFPNVDMAYEVREGDDIRAGDNVTVQVTLERDMTNLPSEVGPVHAPRY
PKPKEEGWWLVIGDSSTNQLLAIKRVALQKRARVKLEFTAASEAGRKEYMIYLMSDSYLG
CDQEYEFTVDVMDAGGD
NT seq
6534 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctgggcggcggcgccgaggcgcacgcgcgcttcaagcagtacgagtaccgc
gccaactccagcctcgtcctcaccaccgactcgcgcccccgcgacacccacgagcccacc
ggcgagcccgagacgctctggggcaggatcgaccccaggagcttcggcgaccgcgccgtc
caggccaagccccccgagctcgaggagaagctcaccaagtcccgcaagaagaaggccgcc
gccgctgaccccgacgacctccaccgccgcgacgccaagcgcaggcgccgcgccgcagcc
gcccagcgtgaggtcagcgtcctctcgctcaccgacgacgtcgtctacaagccccagacc
aaggagacgcgcgccgcctacgaggccctgctcagcgtcatccagcagcagttcggcgga
cagccgctcgacgtgctcggcggcgctgccgacgaggtgctcgccgtcctcaagaatgac
aagatcaagagccctgacaagaagaaggagatcgagaagctcctcaaccctatctccaac
cagatgttcgaccagatcgtctccatagggaagctcatcacggatttccatgatgcctcg
gctggtgattcagctgctgcgccatctggtgatggcatggacacagcgctggatgatgac
atcggcgttgctgttgaatttgaagagaacgaagatgacgaggagagcgatttcgatcag
gtgcaagatgatttggatgaagatgaagatgatgacttgcctgagtcgaatgcccctggt
gctatgcaaatgggtggcgagttagatgatgatgatatgcagaactccaacgaggggctg
accataaatgtacaagacattgatgcttactggcttcagaggaaggtctcgcaagcatac
gaagatattgatccgcagcacagtcagaagcttgctgaggagatcttgaagataattgct
gagggtgatgacagagatgtcgagaatcggcttgtcatgctgttggactatgaaaagttt
gatctcattaaactgctactacgcaaccgactcaagattgtttggtgtacccgtttagca
agggctgaagatcaggaacagcggaagaagattgaggaagatatgatgggtaacccaact
ttaactccgatattggagcagctacatgcaacgagggcatctgcaaaggagaggcagaag
aatctagagaaaagtatcagggatgaggccaagaggcttactaaaagcgaaaacactggc
attgatggtgcgagggatcgtagggcagttgaccgggatatggagagtggatggttgaaa
ggccagaggcagctgcttgatcttgacagcctgtccttccaccaaggtggtctcttgatg
gccaacaagaaatgtgagcttcctccaggatcattcagaacccctcataaggggtatgag
gaagtccatgtgccggcgctaaaagctaagccatatgaaactggagagaagattgtcaag
atatctgatatgccagagtgggctcaaccagcttttgctaagatgacacagctgaacagg
gttcagagcaaggtttatgagactgcccttttcaaaccagataatattctcctctgtgct
ccaacaggtgctgggaaaaccaatgtggctgtgctcacaatccttcagcagattgggttg
catatgaaggatggagtgtttgacaataccaagtacaaaattgtctatgtggccccaatg
aaagctttggttgccgaagttgttggaaatttgtcggctcggctgagtgcatatggtatt
actgtaagagagctcagtggagaccagaacctgaccaaacagcagattgatgaaacacag
ataattgtcaccacacctgagaaatgggacattgtcacaagaaaatcaggtgacagaacc
tatactcaaatggtaaagcttctaatcattgatgagatccatctacttcatgacaacaga
gggcctgttctggagagcattgtttctagaactgtccggcagattgagacgaccaaagaa
catatccgtctagttggtctctcagcaactcttccgaactatgaagatgtcgcggttttc
ctgcgtgttcgctctgatggcctcttccatttcgataacagctacagaccttgccccctt
gctcagcaatacattgggatcactgtgaggaagccactacagaggtttcagctgatgaat
gagatttgctacgagaaggttatggcatctgctggaaagcatcaagtgcttatattcgtg
cactcgaggaaggagacagcgaaaactgcccgtgccatcagagatactgcattggctaat
gacacgttaaaccgcttcttgaaggatgatagtgcaagccaagagattcttgggagtcag
gcagaactagtaaaaagcagtgaccttaaagaccttttgccttatgggtttgctattcat
catgctgggttggcaagggtagaccgtgagcttgtagaggagctttttgccgataagcat
atacaggtccttgtctcaacagccacccttgcatggggtgtcaatttgcctgcacacact
gttataataaagggtacccagatttacaatcctgaaaagggtgcgtggacagagctgagt
cctctagatgtcatgcagatgcttggccgtgctggcaggccacagtatgatacacatgga
gagggaataatcctaactggccacagtgaattgcaatattacctgtctctaatgaatcaa
caactgcctattgagagtcagttcatatccagattggctgatcaattaaatgcagagatt
gttcttgggactattcagaatgctcgggaggcatgctcatggcttggctacacctacctc
tacatccggatgctccggaatccaacattgtatggtctaccggcagatatcatggagact
gataaaacactagatgaaaggagagctgacttggtgcactctgctgcaaatctgctcgat
aggaacaatttgataaagtatgacaggaaaacaggatacttccaggttactgacctagga
aggattgctagttattactatattagccacgggactatttcaacttacaatgagtacctg
aagcctacaatgggtgatattgagctatgtcggctcttttcactcagtgaagaattcaag
tatgtcagtgttagacaagatgagaaaatggagctggctaagcttttggatcgtgtgcct
attcctgtgaaagaaagcttggaggagcccagtgcaaagatcaatgttctgctgcaagca
tatatttctaggctgaaattggagggtctttcgcttagctccgatatggtctacatcaga
cagagtgctggccgtctcttacgagcgttgtttgagatagttctgaagagaggatgggcc
caactagcagagaaggctttgaatctttgtaagatgatagataagcagatgtggaatgtc
caaactcccctgcgccaattccctggtattccgaaggaaatcctaatgaaactggagaaa
aaagaattggcttgggagaggtactacgacctatcatctcaggaaattggtgaactaatt
cggttcccgaagatgggcaggcaactgcacaagtgcatccaccagttaccaaagttgaat
ctttcagcccatgttcagccaattactcgtacggttttgggttttgagttgactataact
cctgatttccaatgggatgataaggtacatggatatgtggagcctttctgggttattgtt
gaggacaacgatggcgagaacattcttcaccatgagtacttcatggttaagaaacaatac
gtagatgaagatcatacactcaacttcacagtgccaatatacgagccactgccccctcaa
tactttattcgtgttgtatctgataagtggcttggttctcagacaattcttcctgtctgt
tttaggcacttaattcttccagaaaaatatgctccgccaactgaattgcttgatctgcag
ccactgcctgttactgcattgagaaatgcacgatacgaaggcctttatagtgccttcaaa
catttcaacccaatccagactcaagtgttcactgttctgtacaacactgatgacagtgtt
ttggttgctgcgccaacaggcagtggaaagaccatctgtgcagagtttgctatactaaga
aaccatcagaaggctgtatctggtgagagcaacatgcgagttgtgtatattgctcctatt
gaagcccttgcaaaagaaaggtacagggattgggagcagaaatttggagaatttgctcgg
gtagttgagctaacaggtgaaactgcagctgacttgaagcttctggataaaggggagatt
ataattagtactcctgagaagtgggatgcactctctcgccggtggaaacagcggaaacaa
gtccaacaggtcagcctattcattgttgatgagcttcatctgattggatctgaaaaggga
catgttctggaagtcatcgtctctaggatgaggcgtattgcaagtcatatcggcagtaac
atccggattgtggctctttcagcttcacttgcaaatgctaaagatctcggagaatggatt
ggtgctacctctcatggccttttcaactttcctccagctgtccggccggtgccattagaa
atacacattcagggtgtggatatagcaaattttgaggcaaggatgcaggcaatgacgaag
ccgacatacactgctattacccaacatgcaaagaatggtaaacctgccctggtgtttgtg
cctacacggaagcatgcaaggttgactgcattggacttgtgtgcatactcgagtgctgag
ggtggtggaacacctttccttcttggttcagaagatgagatggatgctttcactggtggt
atcagtgatgaaacacttaaatatactctgaaatgtggtgtaggctacttgcatgaaggt
ttaagtgatctggaacaggaagttgtaacgcagctgtttctcggtgggaggatccaagtg
tgtgttgcgagtagcactgtgtgctggggaagatcattgcctgcccatctggtggttgtg
atgggaacccagtattatgatggccgggagaatgctcatactgattatccaatcactgat
ctactccaaatgatgggtcatgctagcaggcctcttcaagataactcagggaaatgtgtt
atattgtgtcatgcgcctcgcaaggaatactacaagaagttcctttttgaggccttccct
gttgagagccatcttcaccacttcttgcatgatcatatgaacgctgaggtggtggttggt
gtcatagaaaacaagcaagatgctgtggattaccttacttggaccttcatgtacaggcgg
ctgaccaagaaccctaactactacaatctgcagggcgtgagccacaggcatttgtcggac
catttatctgagttggttgagactgtattgaatgacctagaatcaagcaagtgtgtggct
atagaggaggatatgtacctgaagcccctcaaccttggtctgattgcttcgtactactac
attagctacacaactattgagaggttcagttcaatgctaactcaaaagactaagatgaaa
gggctcctggagattctagcctctgcttcagaatatgctgagcttcccagtcgccctggt
gaggaggatttcattgagaagcttgttcgccaccagagattttccatcgagaagcccaag
tatggtgatccacatgtcaaggctaacgcactgctgcaagctcatttttcaaggcacact
atcttagggaacctggcagccgaccagcgggagatactcctttctgctcatagattgctc
caggcaatggttgatgttatctccagcaatggatggcttacgcttgctcttaatgcaatg
gagctgagtcaaatggtgacacaaggcatgtgggatcgtgattctgttcttttacaactt
ccacatttcaccaaggagttggcacggagatgtcaggagaatgaagggaggcccattgag
agcatctttgatctggctgagatgagcatcgatgagatgcgggatctgttgcagcaatca
aaccctcagctgcaggatatcattgaattcttcaagcgtttccccaatgtcgatatggct
tacgaagttcgcgagggtgatgatatcagggctggtgacaatgtaactgtacaggtgacc
ctggagcgtgacatgacgaacttgccttctgaggtggggccagttcatgcccccaggtac
ccaaagcccaaggaagaaggctggtggctggtaattggtgatagctctaccaatcagttg
cttgcaatcaagagggttgcacttcagaagagggctcgagtgaagcttgagttcaccgct
gcttcagaagctgggagaaaggagtacatgatctacctgatgtccgattcttatctgggc
tgcgatcaggagtacgagttcaccgtcgatgtcatggatgctggaggggattga
DBGET
integrated database retrieval system
