Oryza sativa japonica (Japanese rice): 4328159
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Entry
4328159 CDS
T01015
Name
(RefSeq) Golgi SNAP receptor complex member 1-2
KO
K08495
golgi SNAP receptor complex member 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
4328159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4328159
Membrane trafficking [BR:
osa04131
]
SNARE
SNAP-25[N] (Qb)
Gos1 (Gos28)
4328159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-SNARE_C
Laminin_II
KIF21A
FliD_N
GrpE
FUSC
STX6_10_61_N
Motif
Other DBs
NCBI-GeneID:
4328159
NCBI-ProteinID:
XP_015627527
UniProt:
Q6Z2M4
Q0E4B9
LinkDB
All DBs
Position
2:join(1409709..1410062,1410155..1410244,1410359..1410430,1410880..1411009,1411201..1411298)
Genome browser
AA seq
247 aa
AA seq
DB search
MMPSASDAAAAAAALELQESGWEELRREARKLEGDLDVKLSSYARLAARSSSAADAASAS
SPSERSSWKSMEFEIQSLLDKLQDVNDAMSRCAASTAPTTSVSQKLARHRDILHEFAQEF
RRTRGNLSSIREHADLLSSVRDDITESKATGGMSPRVHLLRERASIHGSINQIDEVIGQA
QSTRVALSNQRALFGDVQGKVKQLGEKFPVIRGLLGAIKRKKSKDTIILSAVIAACTIFL
IIYWLSK
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgatgccgtcggcgtcggacgccgcggcggcggcggcggcgctggagctgcaggagtcc
gggtgggaggagctgcggcgggaggcacggaagctggagggtgacctcgacgtcaagctc
tcctcctacgcgcgcctcgccgcgcgctcctcctccgccgccgacgccgcctccgcctcc
tccccgagcgagcgctcctcctggaagtccatggagttcgagatccagtcgctgctcgac
aagctgcaggacgtcaacgacgccatgagccgctgcgccgcctccaccgcccccaccacc
tccgtctcgcagaagctcgcccgccaccgcgacatcctccacgagttcgcgcaggagttc
aggaggacgagggggaatctgagctccatcagggagcacgccgatctcctcagctctgtg
cgggacgacattactgagtccaaggctactggcggcatgtcgccgagggtgcatttgctc
agggagagggcctcgattcatggcagcattaaccagattgatgaggtaattggccaagct
cagagcacaagggtagccctttccaatcagagggcattgtttggggatgttcaaggaaaa
gtcaagcagttgggtgaaaagttccctgttattagaggactacttggtgccatcaagagg
aagaaatcaaaggacactatcatcctttcagcagtgatcgcggcctgcaccatctttttg
attatttactggctttcgaaatga
Oryza sativa japonica (Japanese rice): 4345680
Help
Entry
4345680 CDS
T01015
Name
(RefSeq) Golgi SNAP receptor complex member 1-1
KO
K08495
golgi SNAP receptor complex member 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
4345680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4345680
Membrane trafficking [BR:
osa04131
]
SNARE
SNAP-25[N] (Qb)
Gos1 (Gos28)
4345680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-SNARE_C
Not3
NET2A_C
4HB_MCP_1
Sec20
TLN1-like_RS
Bap31_Bap29_C
COG5_N
Apolipoprotein
IMD
Motif
Other DBs
NCBI-GeneID:
4345680
NCBI-ProteinID:
XP_015650150
UniProt:
Q0J5F1
Q6Z9I2
LinkDB
All DBs
Position
8:complement(join(21538666..21538779,21538874..21538987,21539808..21539969,21540193..21540420,21541557..21541592))
Genome browser
AA seq
217 aa
AA seq
DB search
MEASSWDALRKQARRLEAQLDDQMSAYRKLISMKSDGSENDIESDIERSLKQLQQVNSQM
QTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLRAKQQHASLLDLRDFDRAKFDVE
EGADSDQALLKEQAAISRSTGQMDTVISQAQATLGTLMLQRSTFGGITTKISNVSSRLPT
INQILSSIKRKKSMDTIILSLVASVCAFLIFIYWMSK
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgtcttcctgggacgccctccgcaagcaggcaaggaggctagaagctcagtta
gatgaccaaatgagtgcttaccgtaaattgatttccatgaaatctgatggttctgagaat
gatatcgagtccgatatagaaagatcgctgaagcaacttcagcaagtaaattctcaaatg
cagacatgggtatcatcaggaggctcagaagtcctttctcatacattgactcgtcatatg
gagatattgcaagaccttacacaggaattctatcgcctccgatcaagccttagagcaaag
caacaacatgcttctcttcttgacttgagagattttgacagagcgaagtttgatgttgaa
gagggtgctgactctgatcaagctctgctcaaagaacaagctgcgatcagcaggagtact
gggcagatggataccgtgatatcacaagctcaagctacattaggcacacttatgttgcaa
cgatcaacatttggtggtattactacgaagataagcaacgttagcagtcggctccctacg
attaatcaaattctttcatccatcaaaagaaagaaatcgatggacaccattattctatcc
ctggttgcatctgtttgtgcatttcttatttttatctattggatgtcaaagtaa
Oryza sativa japonica (Japanese rice): 4347065
Help
Entry
4347065 CDS
T01015
Name
(RefSeq) Golgi SNAP receptor complex member 1-1
KO
K08495
golgi SNAP receptor complex member 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
4347065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4347065
Membrane trafficking [BR:
osa04131
]
SNARE
SNAP-25[N] (Qb)
Gos1 (Gos28)
4347065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-SNARE_C
Not3
NET2A_C
Sec20
COG5_N
4HB_MCP_1
Bap31_Bap29_C
Motif
Other DBs
NCBI-GeneID:
4347065
NCBI-ProteinID:
XP_015611820
UniProt:
B9G3K9
Q6EQ07
LinkDB
All DBs
Position
9:complement(join(19299960..19300073,19300162..19300275,19302525..19302686,19302935..19303162,19304095..19304130))
Genome browser
AA seq
217 aa
AA seq
DB search
MEASSWDALRKQARRLEAQLDDQMIAYRKLVSMKSDGSENDIESDIERSLKQLQQVNSQM
QTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLRVKQQHASLLDLRDFDRAKFDVE
SGDSADQALLREQAAISRSSGQMDNVISHAQATLGTLMSQRSTFGGITTKISNVSSRLPT
INHILASIRRKKSMDTIILSLVASVCAFLILVYWLSK
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgtcttcttgggacgcccttcgcaagcaggcaaggaggttggaagctcagtta
gatgatcaaatgattgcataccgtaaattggtgtctatgaaatcagatggttcagagaat
gatatcgagtctgatatagaaagatcactgaagcagcttcagcaagtaaattctcaaatg
caaacttgggtatcatcaggaggctctgaagttctttctcacacattgacccgtcatatg
gagattttgcaagatcttactcaggaattctatcggcttcgatcaagcctcagagtgaag
caacaacatgcttcgctccttgacctaagagattttgacagagcaaagtttgatgttgag
agtggagactcagccgatcaagctcttcttagagaacaagctgcaatcagtaggagttct
ggacagatggataatgtgatatcacatgctcaagcaacgctaggaactctcatgtcacaa
cgatcaacatttggtggcatcactacaaagataagcaatgttagtagccggcttcctacg
atcaatcatatcctcgcgtcaattagaagaaagaagtcgatggacacaatcattctttca
cttgtcgcgtctgtctgcgcctttcttattctcgtctactggttgtcaaagtag
DBGET
integrated database retrieval system