Oryza sativa japonica (Japanese rice): 4328313
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Entry
4328313 CDS
T01015
Name
(RefSeq) putative adagio-like protein 2
KO
K12115
clock-associated PAS protein ZTL
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4328313
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4328313
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
4328313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_4
Kelch_3
Kelch_2
Kelch_5
Kelch_6
Kelch_1
PAS_9
F-box-like
PAS
PAS_3
F-box
PAS_4
PAS_8
Motif
Other DBs
NCBI-GeneID:
4328313
NCBI-ProteinID:
NP_001396256
LinkDB
All DBs
Position
2:join(2807397..2807668,2809794..2811393)
Genome browser
AA seq
623 aa
AA seq
DB search
MEWDSDSEGSGDEEEEEEEEEEEGVEVGGGGDGGVGVGVGGGFALAIEGVLGACGLVVSD
ALEPDFPIIYVNRGFEDATGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDTTVVTDIRRCL
EEGTVFQGDLLNFRKDGSPFMAKLQLTPIYGDDETITHYMGMQFFNDSNVDLGPLSVSTT
KEIVRSTLITPDNTIRPSPMGKGFCSEHSDLFLLSDEVLCQKILSRLSPRDIASVNSVCK
RLYHLTRNDDLWRMVCQNAWGSEATQVLETVAGTRSLAWGRLARELTTLEAVTWRKLTVG
GAVEPSRCNFSACAAGNRVVLFGGEGVNMQPMNDTFVLDLNASKPEWRHINVRSAPPGRW
GHTLSCLNGSRLVLFGGCGRQGLLNDVFMLDLDAQQPTWREIPGLAPPVPRSWHSSCTLD
GTKLVVSGGCADSGVLLSDTYLLDVTMERPVWREIPASWTPPCRLGHSLSVYDGRKILMF
GGLAKSGPLRLRSNDVFTLDLSENKPCWRCITGSGMPGASNPAGVGPPPRLDHVAVSLPG
GRILIFGGSVAGLHSASKLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVGGTKAIVL
GGQTGEEWTLTELHELSLVSSLV
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggagtgggacagcgactcggaggggagcggagacgaggaggaggaggaggaggaggag
gaggaggagggggttgaggtggggggaggtggggatgggggcgtgggcgtgggagtcggt
gggggattcgcgctggcgatcgagggggtgctgggcgcgtgcgggctggtggtgtcggac
gcgctggagccggatttccccatcatctacgtcaaccgcggcttcgaggacgccaccggg
taccgcgccgaggaggtgctcgggaggaactgtcgattcttgcagtgtagaggaccattt
gctaagaggagacatccccttgttgatactacagtagttactgacattcggagatgctta
gaggaaggcactgtgttccagggcgatctgctgaactttaggaaagatggttctccattc
atggcaaagctccagttaacacccatttatggagatgacgaaacaataacccactatatg
ggcatgcagttcttcaatgactctaatgttgatttggggccattgtctgtctctacaaca
aaggagattgtgagatctactttgattacaccagataacaccatccgaccaagtccaatg
gggaagggcttctgctcagagcattctgatcttttcctattgagtgatgaggtactttgc
cagaagatcctatcaagattatcgcccagggatatagcatctgtaaactctgtatgtaaa
cggctgtaccacttaacaaggaatgacgacctttggagaatggtttgtcagaatgcatgg
ggcagtgaagcaactcaagttcttgagactgtggctggaacaagaagtttggcatggggg
cggttagcaagagagttgaccaccctggaagctgtcacctggaggaaattgactgttggg
ggtgcagtggagccttctcgctgcaacttcagcgcttgtgcggcagggaaccgtgttgtc
ctttttggaggggaaggtgttaacatgcagccaatgaatgatacatttgtgcttgatttg
aatgccagcaagccagaatggaggcacatcaatgtgagatcggctcctcctgggcgctgg
ggtcataccctttcttgcctaaatggatcacggttggttttgtttggtggttgtggaagg
cagggcctgctcaatgatgtgttcatgttggatttggatgcacagcaaccaacttggcgt
gagattcctggccttgcaccaccagttccacggtcatggcatagttcttgcacattggat
ggaacaaaattggtggtatctggtggctgtgctgattctggtgtgcttctcagtgacacg
tatcttttggatgtaacaatggaaagacctgtttggagggagatacctgcatcttggact
ccaccttgtagattggggcactcgctctctgtctacgatggcaggaaaatcctgatgttt
ggtggtcttgctaaaagcggtcctctacgactaaggtctaatgatgtgttcacattggat
ttaagtgaaaataagccatgctggcggtgtatcaccggcagtggaatgccaggagccagt
aatccagctggagttggtccaccccctcgccttgaccatgtcgctgtgagccttcctgga
gggagaattttgatatttggtggatcagtggcaggtcttcactccgcttcaaagctttac
ctgctggatccgactgaagagaagcctacctggaggatactgaatgttcctggccgccct
ccgcgatttgcctggggccacagtacctgtgttgtgggaggtacaaaggcgatagttctt
ggaggacaaactggagaggagtggacactaactgaactgcatgagctttctctggtaagc
tctttagtctga
Oryza sativa japonica (Japanese rice): 4341923
Help
Entry
4341923 CDS
T01015
Symbol
OsJ_22473
Name
(RefSeq) adagio-like protein 1
KO
K12115
clock-associated PAS protein ZTL
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4341923 (OsJ_22473)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4341923 (OsJ_22473)
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
4341923 (OsJ_22473)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_4
Kelch_3
Kelch_2
Kelch_5
Kelch_6
Kelch_1
PAS_9
F-box-like
PAS_3
F-box
PAS
F-box_5
PAS_4
Motif
Other DBs
NCBI-GeneID:
4341923
NCBI-ProteinID:
NP_001408702
LinkDB
All DBs
Position
6:complement(join(29836692..29838300,29840738..29841021))
Genome browser
AA seq
630 aa
AA seq
DB search
MEWDSESDGAGSIGAGEEEEEEEEEEEGGFGGGGGGGGGGGGMFSFAIEGMLRASGPCGL
VVTDALEPDCPIIYVNCGFEEATGYRAEEVLGRNCRFLQCRGPFAQRRHPLVDAMVVSEI
RKCIDNGTEFRGDLLNFRKDGSPLMNKLHLTPIYGDDETITHYMGIQFFTNANVDLGPLP
GSLTKEPVRSTRFTPDNFFRPISTGPGQSNFCREYSSLFQLTDEVLCQSILSRLSPRDIA
SVSSVCRRLYLLTRNEDLWRMVCQNAWGSETTRALETVPAAKRLGWGRLARELTTLEAVA
WRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNASNPEWRHVNVS
SAPPGRWGHTLSCLNGSLLVVFGGCGRQGLLNDVFTLDLDAKQPTWREIPGVAPPVPRSW
HSSCTLDGTKLVVSGGCADSGVLLSDTYLLDVTMDKPVWREVPASWTPPSRLGHSMSVYG
GRKILMFGGLAKSGPLRLRSSDVFTMDLSEEEPCWRCLTGSGMPGAGNPAGAGPPPRLDH
VAVSLPGGRVLIFGGSVAGLHSASQLYLLDPTEEKPTWRILNVPGRPPRFAWGHSTCVVG
GTKAIVLGGQTGEEWMLTEIHELSLASSTV
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggagtgggacagcgagtcggacggcgccggcagcatcggcgccggcgaggaggaggag
gaggaggaagaggaggaggagggtggttttgggggaggaggtggtggtgggggcggcggc
ggagggatgttctcgttcgcgattgaagggatgctgcgcgcttcggggccgtgcgggctc
gtcgtcaccgacgcgctcgagcccgactgccccatcatctacgtcaactgcgggttcgag
gaggccacgggataccgcgcggaggaggtgctcggcaggaactgccgattcctgcaatgc
agaggaccctttgcgcaaaggagacatcccctagttgatgccatggtggtttctgagatt
cgcaaatgcatagacaatggtaccgaattccgtggtgatttgctaaatttcaggaaagat
ggctctccattgatgaacaagttacacctgacccctatatatggagatgatgagaccata
actcattacatgggcattcagttcttcaccaatgctaatgttgatttgggaccattgcct
ggctcattgacgaaggaacctgtcagatctacaagatttactccagataactttttccgg
cccatatccactggaccagggcagagcaacttctgccgggaatattctagcctgttccag
ttgactgatgaagtactctgccagagtatcctgtcaaggttgtcaccaagagatatagca
tctgttagctctgtgtgtaggcggttgtatctcttgacaagaaatgaagatctttggaga
atggtttgtcagaatgcatggggcagtgagactactcgagctcttgagactgtccctgcg
gcaaaaagattaggctggggtcgattggcaagagagctgaccacactggaagctgttgct
tggaggaagttgacagttgggggtgccgtggagccatctcgatgtaacttcagtgcctgt
gctgtagggaatcgtgttgttctctttggtggggaaggtgttaacatgcaaccaatgaat
gacacatttgtgttggatttgaatgctagcaatccagaatggaggcatgtcaatgtaagc
tcagctcctcctggccgttggggccataccctatcatgcctaaatggatcgctgttagtt
gtgtttggtggatgtggaagacagggcctgcttaatgacgtgttcacattggatttggat
gcaaaacagccgacctggcgcgagattcctggagttgcaccaccagttccacgttcatgg
cacagctcctgcactttagatgggacgaagttggtggtttctggtggctgtgcagactca
ggtgtactactcagtgatacatatcttcttgatgtaacgatggacaaacctgtgtggagg
gaggtacctgcatcttggacgccaccttcgagattgggccactcaatgtctgtctatggt
ggcaggaaaattttgatgtttggtggtcttgctaagagtggtccactgcgactccggtca
agtgatgtgttcacaatggacttaagtgaagaggaaccctgctggcggtgcctcaccggt
agtggaatgcctggggcaggaaatccagccggagctggtccacctcctcgccttgatcat
gttgctgtcagcttacctggggggagagttttgatatttggtggatcagtggcaggtctt
cattcagcgtcacagctttatctcttggatccaactgaagaaaagcctacctggaggata
ctgaatgttcctgggcgacccccacggtttgcctggggccacagcacctgtgttgttgga
ggaacaaaagcaatagtgcttggaggacaaactggagaagagtggatgttaaccgaaatc
catgagctttctttggctagcagcacagtttga
DBGET
integrated database retrieval system
