Oryza sativa japonica (Japanese rice): 4328662
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Entry
4328662 CDS
T01015
Name
(RefSeq) transcription factor HY5
KO
K16241
transcription factor HY5
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4328662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4328662
Transcription factors [BR:
osa03000
]
Eukaryotic type
Basic leucine zipper (bZIP)
Plant bZIP factors
4328662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bZIP_1
bZIP_2
GAS
TSC22
bZIP_Maf
Uso1_p115_C
DMPK_coil
SHE3
DUF3563
FmiP_Thoc5
FlaC_arch
GIT_CC
DUF724
YabA
Phlebovirus_NSM
Motif
Other DBs
NCBI-GeneID:
4328662
NCBI-ProteinID:
XP_015623711
UniProt:
A0A0P0VG62
LinkDB
All DBs
Position
2:complement(join(5771547..5771612,5771756..5771912,5773272..5773461,5773630..5773714))
Genome browser
AA seq
165 aa
AA seq
DB search
MQEQATSSRPSSSERSSSSGGHHMEIKEGMESDEEIGRVPELGLEPGGASTSGRAAGGGG
GGAERAQSSTAQASARRRGRSPADKEHKRLKRLLRNRVSAQQARERKKAYLNDLEVKVKD
LEKKNSELEERFSTLQNENQMLRQILKNTTVSRRGPGSTASGEGQ
NT seq
498 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagcaggcgacgagctcgcggccgtccagctccgagaggtcgtccagctccggc
ggccaccacatggagatcaaggaaggaatggagagcgacgaggagatagggagagtgccg
gagctggggctggagccgggcggcgcttcgacgtcggggagggcggccggcggcggcggc
ggcggggcggagcgcgcgcagtcgtcgacggcgcaggccagcgcgcgccgccgcgggcgc
agccccgcggataaggagcacaagcgcctcaaaaggttgctgaggaaccgggtatcagcg
cagcaggcaagggagagaaagaaggcatacttgaatgatcttgaggtgaaggtgaaggac
ttggagaagaagaactcagagttggaagaaagattctccaccctacagaatgagaaccag
atgctcagacagatactgaagaatacaactgtgagcagaagagggccaggtagcactgct
agtggagagggtcaatag
Oryza sativa japonica (Japanese rice): 9268301
Help
Entry
9268301 CDS
T01015
Name
(RefSeq) transcription factor HY5
KO
K16241
transcription factor HY5
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
9268301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
9268301
Transcription factors [BR:
osa03000
]
Eukaryotic type
Basic leucine zipper (bZIP)
Plant bZIP factors
9268301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bZIP_1
bZIP_2
bZIP_Maf
Phlebovirus_NSM
CASP_C
Myosin_tail_1
CCDC144C
GIT_CC
APG6_N
Saf4_Yju2
GAS
ATF7IP_BD
UPF0242
DUF1192
CENPH
TSC22
FlaC_arch
SHE3
Med9
Macoilin
TMCO5
CENP-F_leu_zip
FmiP_Thoc5
Sas6_CC
Sipho_Gp157
ZapB
V_ATPase_I
SR-25
Motif
Other DBs
NCBI-GeneID:
9268301
NCBI-ProteinID:
XP_015641260
LinkDB
All DBs
Position
6:join(24625153..24625249,24625419..24625653,24627528..24627684,24627985..24628047)
Genome browser
AA seq
183 aa
AA seq
DB search
MQRDHRRSSPPAAASSSERSSDSAPNTDDGKEGVDSDDEEIVGRVPEFGLALPGTSTSGR
GSVRVAGDAAATAAGTSSSSPAAQAGVAGSSSSGRRRGRSPADKEHRRLKRLLRNRVSAQ
QARERKKAYMSELEARVKDLERSNSELEERLSTLQNENQMLRQVLKNTTANRRGPDSSAG
GDS
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgagatcaccggaggagctcgccgccggcggccgcctccagcagcgagaggtcg
tcggactccgccccaaacaccgacgacggcaaggaaggggtggatagcgacgacgaggag
atagtagggagggtgccggagttcgggctggcgctgccggggacgtcgacgtcgggcaga
ggtagtgttcgggttgcaggtgacgcggcggcgacggcggccgggacgtcgtcgtcgtcg
cccgcggcgcaggccggcgtcgccggcagcagcagcagcgggcgccgccgcggacgcagc
cccgccgacaaggagcaccggcgcctcaaaagattgctgaggaaccgggtgtcagcgcag
caggctcgggagaggaagaaggcgtacatgagtgagctggaggcgagggtgaaggacctg
gagaggagcaactcagagctggaggagaggctctctaccctgcaaaacgagaaccagatg
cttaggcaggtgctgaagaacacaacagcaaacagaagagggccagacagcagtgccggc
ggagacagctag
DBGET
integrated database retrieval system
