Oryza sativa japonica (Japanese rice): 4329738
Help
Entry
4329738 CDS
T01015
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4329738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
4329738
NCBI-ProteinID:
XP_015625401
UniProt:
A0A0P0VKP4
Q6YXC2
LinkDB
All DBs
Position
2:join(22457916..22458273,22458891..22459819,22459909..22460750,22460945..22460972)
Genome browser
AA seq
718 aa
AA seq
DB search
MSASPSSMSGAGAGEAGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPVYVWAPEEDGPY
YPGRVSRWWLSQSLKHLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLYD
PLSLVRDHRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPA
APLLPPKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGP
LMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFL
RSIGLREYSRYLTFNHPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMREL
WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGR
ELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYP
LPIVELDAAKTRLQDALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQMEVDR
APAQPTVHGPTTAGRRREDQMVPSMTSSLVRAETELSADFDNSMDSRPEVPSQVLFQPRM
EREETVDGGGGGGMVGRSNGGGHQGQHQQQQHNFQTTIHRARGVAPSTSEASSNWTGREG
GVVPVWSPPAASGPSDHYAADEADITSRSYLDRHPQSHTLMNWSQLSQSLTTGWEVEN
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgtcgccgtcgtcgatgagcggcgccggcgccggcgaggcgggggtgcggacg
gtggtgtggttcaggcgggacctgcgcgtggaggacaacccggcgctggcggcggcggcg
cgggcggccggggaggtggtgccggtgtacgtgtgggcgccggaggaggacgggccgtac
tacccggggcgggtgtcccggtggtggctcagccagagcctcaagcacctggacgcctcg
ctccggcggctcggcgccagcaggctcgtcacccgccgctccgccgacgccgtcgtcgcg
ctcatcgagctcgtccgcagcatcggcgccacgcatctcttcttcaaccacctctacgac
ccgctgtcgctggtgagggaccaccgggtgaaggcgctgctgacggccgagggcatcgcc
gtgcagtcgttcaacgccgacctgctgtacgagccatgggaggtggtcgacgacgacggc
tgcccgttcaccatgttcgcgccgttctgggacaggtgcctgtgcatgcccgacccggcg
gcgccgctgctgccgcccaagaggatcgcgcccggcgagctgccggcgaggaggtgcccc
tccgacgagctggtgttcgaggacgagtccgagcgggggagcaacgcgctgctggcgagg
gcgtggtcgcccgggtggcagaacgccgacaaggcgctggccgcgttcctcaacgggcca
ctcatggactactcggtgaaccggaagaaggccgacagcgccagcacgtcactgctgtcg
ccgtacctgcacttcggcgagctcagcgtacgcaaggtgttccaccaggtgaggatgaag
cagctcatgtggagcaacgaggggaaccacgccggcgacgagagctgcgtcctcttcctc
cggtccatcggcctcagggagtactcgaggtacctcacgttcaaccacccgtgcagcctg
gagaagccactcctggcgcacctcaggttcttcccctgggtggtcgacgaggtgtacttc
aaggtgtggaggcaggggaggacagggtaccctctcgtcgacgccgggatgcgcgagctc
tgggccaccggctggctgcacgaccggatacgcgtcgtcgtctccagcttcttcgtcaag
gtgctccagcttccatggcgctgggggatgaagtacttctgggacaccctgctcgacgcc
gacctcgagagcgacgcgctcggctggcagtacatctccggctctctccccgatggccgt
gagctcgaccgcatcgacaaccctcagcttgaaggatacaagtttgatccgcacggggag
tatgtccggcgatggctgccggagctggcaaggctgccgacggagtggatacaccaccca
tgggacgcaccggagtcggtgctccaggctgcagggattgagctaggctccaactatcct
ctccccatcgtggagctggacgcggcgaagaccaggctgcaggatgcactgtcagagatg
tgggagctcgaggccgcgtcacgcgcagcgatggagaacggaatggaggagggcctcggc
gactcctccgacgtgccgccgatcgccttcccaccggagctgcagatggaagttgaccga
gcaccggcccagcctactgttcacggaccgacaacggctggccggcgacgagaggatcag
atggttcccagcatgacctcctcgctggtcagagctgaaacagaactttcagcggatttt
gacaacagcatggacagtaggccggaggtgccgtcgcaggtgctcttccagcctcggatg
gaaagggaagaaacagtggacggcggcggtggcggcggaatggtcggcaggagcaacggc
ggcggccaccaaggccaacaccagcagcaacagcacaactttcagactacaattcaccgg
gcacggggcgttgcgccgtctacgtcagaggcatcaagcaactggactgggagagaaggc
ggcgtggtgcccgtctggtcgcctccggcagcgtcaggcccctcagatcactacgctgcc
gatgaagctgacattaccagtagaagttatttggacaggcatccacagtcgcatacgttg
atgaactggagtcagctctcgcagtcattgacaacaggctgggaagtggaaaattaa
Oryza sativa japonica (Japanese rice): 4336008
Help
Entry
4336008 CDS
T01015
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4336008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
4336008
NCBI-ProteinID:
XP_015636604
LinkDB
All DBs
Position
4:join(23043770..23044127,23045151..23045369,23045643..23046349,23046481..23047295,23048152..23048203)
Genome browser
AA seq
716 aa
AA seq
DB search
MSVSSSSMGGGGGGDAGGRTVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPY
YPGRVSRWWLSQSLKHLDASLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYD
PISLVRDHRLKEMMAAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDP
AAPLLPPKRINSGDLSMCPSDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPL
IHYSVNRKKADSASTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLR
SIGLREYSRYLSFNHPCSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELW
ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRE
LDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPL
PIVGLDAANARLQEALSEMWQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDRE
PARVTANVLTTARRREDQMVPTMTSSLNRAETEISADFMNSVDSRAEVPTRVNFEPRTER
EENFRTTAGNVARTNGIHEHNNFQQPQHRMRNVLAPSVSEASSGWTGREGGVVPVWSPPA
ASDHSETFASDEADISSRSYLDRHPQSHRLMNWSQLSQSLTTGREVENSMQPNWIG
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgtcgtcgtcgtccatgggcggcggcggtggcggggacgccggggggaggacg
gtggtgtggttcaggagggacctgagggtggaggacaacccggcgctggcggcggcggcg
cgcgccggcggggaggtggtgccggcgtacgtgtgggcgcccgaggaggacgggccgtac
taccccggccgcgtgtcgcggtggtggctcagccagagcctgaagcacctcgacgcctcg
ctgcggcggctcggcgccggcaagctggtgacgaggaggtcggccgacgccgtcgtcgcg
ctgctccagctcgtccgcgacaccggcgccacgcggctcttcttcaaccatctctacgac
ccgatctcactggtcagggaccaccggctgaaggagatgatggcagcggagggcatcatc
gtgcagtctttcaatgcagacctgctgtacgagccgtgggaagttgtcgacgacgaaggc
caatctttcaccatgtttgcgcctttctggaataggtgcctcagcatgccgtatgatcct
gccgcaccgctgttgcctcctaagagaatcaattcaggtgacttatcaatgtgcccatca
gatgatctgatctttgaggatgactcggagaggggaagcaatgcacttcttgcccgagca
tggtcaccaggctggcagaatgcagacaaggcactgacagctttcctgaatggtcctttg
atccactactcagtgaatcgcaagaaagcagacagtgcaagtacctccctcttatcaccg
tacctgcatttcggtgagctgagtgtgcgcaaggtcttccaccttgttcggatgaagcag
cttgtgtggagcaatgagggcaatcgtgcagctgaagagagctgcaccctgttccttcgg
tccattggtctccgggagtactcacggtatctgagtttcaaccacccatgcagccatgag
aagccccttttggcacacctcaggttcttcccctgggtgatcaatgagtgctacttcaag
atatggcggcagggaaggactggttacccccttgttgatgccggcatgagggagctatgg
gctacagggtggttgcatgatcgtattcgtgtggtagtgtcaagtttcttcgtcaaagtc
cttcaactaccatggcgatgggggatgaagtacttttgggacacattattagacgcagat
cttgagagcgatgcactaggctggcagtatatctctggctctcttcctgatggccgagaa
cttgaccgcattgacaatcctcagctcgaaggctacaagtttgatccgcatggtgagtat
gtccgaaggtggcttccggagcttgcaaggttgccaacagaatggatacaccatccatgg
gatgcacccgcatctgtgctgcaagctgcaggagtcgagttaggctccaactaccctctc
cctatagttgggctagatgcagccaacgccaggctgcaagaagccctgtcagaaatgtgg
cagcttgaggcagcatccagggccgcaatggacaatggaatggaagaaggccttggcgac
tcctcggaggttccaccaattgaatttcctcgagaactacagatggaagttgaccgagaa
ccagctcgagtaacagccaatgtgctgacaacagctcgaagacgcgaggatcagatggtg
ccaacaatgacatcttcactaaacagggctgaaactgagatttctgccgattttatgaac
agtgtggacagtagggcagaggtaccaacccgtgtgaattttgagcctcgaactgagcgg
gaagaaaatttccgtaccactgcgggaaatgttgctagaacaaatggtattcatgagcac
aataatttccagcaacctcagcaccgtatgcgaaatgttctagcaccatctgtatcagag
gcatcaagtggctggactgggagagagggaggcgtagtcccagtttggtcgcctcctgca
gcatcagaccattcagaaacttttgcctctgatgaagctgacatttctagtaggagttat
ttggataggcatccacagtcgcaccggttgatgaactggagtcaattatcccagtcattg
acaacaggtcgggaagtggaaaattccatgcaaccaaattggatcggttag
Oryza sativa japonica (Japanese rice): 9270575
Help
Entry
9270575 CDS
T01015
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12119
cryptochrome 2
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
9270575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
9270575
NCBI-ProteinID:
XP_015625483
UniProt:
B9F161
Q852P4
LinkDB
All DBs
Position
2:join(25402539..25402851,25404009..25404230,25404498..25405213,25406455..25407096,25407909..25407971)
Genome browser
AA seq
651 aa
AA seq
DB search
MAGSERTVVWFRRDLRIDDNPALASAARDGAVLPVFIWCPADEGQFYPGRCSRWWLKQSL
PHLSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELS
ALGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGL
ESVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE
GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL
CFNFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV
IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQG
QKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIAREC
LDDSISTMWQLDTAEKLAELDGEVVEDNLSNIKTFDIPKVVLRETSPCALPIDQRVPHAS
SKDHNLKSKVLKASNRSSICVDMIRSSKMEATSSVANSPVSRKRSFCETAFHVPSYSSSA
EVHSHIQDHGGSLVGPSRYLLQEAGRNYVDEVEDSSTADSGSSISRQRKAA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggccggttcggagaggaccgtggtttggttcaggagggacctcaggatcgacgacaac
ccggcgttggcctccgcggcgagggacggcgctgtgctccctgtcttcatatggtgccct
gcggatgaagggcagttctatcccggccggtgctccaggtggtggctcaagcagtcgctc
ccccacctcagccagtcactggagtcgctcgggtgcccgctcgtgctgatccgagccgag
agtacccttgaggctcttctgcggtgcattgattctgtcggcgccaccagattggtttat
aatcatctgtatgaccctgtttctcttgtgcgtgatgacaaaataaaaaaagagctttcg
gcactgggaatttccatccagagttttaatggtgatctgctgtatgagccatgggaaatt
tatgatgatagtggacttgcatttacaacctttaacatgtactgggagaagtgcatggaa
ttacctattgacgcatcaccgtcacttgcaccttggaaattggtgcctgtcccaggtttg
gagagtgttcgtagctgttctgttgatgacctaggacttgaatcaagcaaggatgaggaa
tcaagtaatgctttgctaatgagggcctggtctcctggttggcgcaatgcagaaaagatg
cttgaagaatttgtctcccatggtctcctagaatactcaaaacatggaatgaaggttgag
ggagctactacatcattgctatcaccatatcttcattttggtgaggtgagtgtaagaaaa
gtatatcaacttgtaaggatgcaacaaatcaagtgggaaaatgagggaacatctgaagct
gaggagagcattcacttcttcatgcggtcaattggtcttcgagaatattcacggtacttg
tgttttaacttcccattcacacatgaaaagtcattgctggggaacttgaaacactaccct
tggaaagtagatgaggagcggttcaagtcctggaggcagggaatgacaggatacccattg
gtagatgctggcatgagggaactttgggctaccggatggacacataatcggataagagtt
atcatttcaagttttgctgtgaaatttctacttatcccatggacttggggtatgaagtat
ttttgggatgtgctattggatgctgatctggaaagtgatattcttggttggcagtacata
tctgggagcctgcctgatggccatgagctcagtcgtcttgataatccagaggttcaaggt
caaaagtatgacccagatggtgtatatgtaagaacttggatacctgaactagctagaatg
ccgacagaatggattcatcatccatgggatgcaccgagctgtattcttgaagttgctgga
gttgagctggggtttaactatcctaagccaatcgtagaccttcacattgctagggagtgt
ttagatgattccatctccacgatgtggcaattggatacagctgagaaacttgcagaatta
gatggtgaggttgtggaggacaacttgagcaatatcaagacttttgacatcccaaaagtt
gttttgagggaaacatctccatgtgctttgcccattgatcaaagagtgccccatgctagc
agcaaggatcataatttaaagtcaaaggtattgaaggcctcaaatagaagttctatttgt
gttgatatgatcaggtcctcaaagatggaagcaacgagctctgtagcaaactcaccggta
tcaaggaaaagatccttttgtgagactgcatttcatgtcccatcttattcatcttcagct
gaagtgcattcgcatattcaagatcatggtggttccttagttgggccttcaagatatctc
ctgcaggaagcaggtagaaactatgttgatgaggtagaagatagctctaccgcagatagt
ggttcgagcatttcaagacaacgaaaagccgcatag
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integrated database retrieval system
