Oryza sativa japonica (Japanese rice) (RefSeq): 4329963
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Entry
4329963 CDS
T01015
Name
(RefSeq) nuclear cap-binding protein subunit 2
KO
K12883
nuclear cap-binding protein subunit 2
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4329963
09122 Translation
03013 Nucleocytoplasmic transport
4329963
03015 mRNA surveillance pathway
4329963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4329963
03041 Spliceosome [BR:
osa03041
]
4329963
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
4329963
Spliceosome [BR:
osa03041
]
Common components
Common spliceosomal components
Cap binding complex
4329963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
DUF5721
Motif
Other DBs
NCBI-GeneID:
4329963
NCBI-ProteinID:
XP_015625308
UniProt:
Q84L14
LinkDB
All DBs
Position
2:complement(24100127..24103567)
Genome browser
AA seq
243 aa
AA seq
DB search
MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI
RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG
RGRSGGQVRDEYRTDYDPGRGGYGKMVQKELEAQRELVDYGGAFQPNAPPQYDRGDRKRG
YGDSYRNDRDYQRKRYRNDERSSQRAPDSEFKRDAIDSEKNPRFREKGDSDEEDDDYDKR
RRR
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccctcttcaaggacccgaccaagctgtccgcgtaccgggacaggcggttcacc
gggacgcaggaggagtacgaggcggcgctgcaggcgtcggtgacggtgtacgtcgggaac
atgtccttctacaccacggaggagcaggcctatgagctcttctcccgcgccggcgagatc
aggaagatcatcatgggactcgacaagaactccaagaccccctgcggcttctgcttcata
ctgtactactccagggaggatgctgaagatgcggtcaaatatattagtggaacaatgctt
gatgatcgcccaattcgtgttgattttgattggggctttgaagaaggcagacaatggggt
cgtggacggagtggtggacaagtaagggatgagtaccgcacggactacgatcctggaaga
ggtggctatggtaagatggttcagaaagagctagaagcacaacgtgagttagttgactat
ggaggtgcttttcaacctaatgcaccacctcaatatgacagaggtgacaggaagagaggg
tatggagattcttaccggaacgacagagattaccaacggaaacgttaccggaacgatgag
cgatcgtcgcaaagagcacctgactctgagttcaagagagatgcgattgattcggagaag
aatcctaggtttcgtgagaaaggtgattctgatgaagaagacgatgattatgataagaga
cgccggcgctga
Oryza sativa japonica (Japanese rice) (RefSeq): 4332822
Help
Entry
4332822 CDS
T01015
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4332822
09122 Translation
03013 Nucleocytoplasmic transport
4332822
03015 mRNA surveillance pathway
4332822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4332822
03041 Spliceosome [BR:
osa03041
]
4332822
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
4332822
Spliceosome [BR:
osa03041
]
Common components
Common spliceosomal components
Cap binding complex
4332822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
DUF5798
RPW8
DUF5742
Motif
Other DBs
NCBI-GeneID:
4332822
NCBI-ProteinID:
XP_015630619
LinkDB
All DBs
Position
3:12976118..12988246
Genome browser
AA seq
910 aa
AA seq
DB search
MSAGWRTLLLRIGDRCPEYGGSADHKEHIETCYGVLCREYEHSKDAMFEFLLQCADQLPH
KIPFFGVLIGLINLENEDFSKGIVDTTHANLQDALHNENRDRIRILLRFLCGLMCSKVVL
PNSIIETFEALLSSAATILDEETGNPSWQPRADFYVYCILASLPWGGSELFEQVPDEFER
VLVGIQSYISIRRHFDDIAFSVFETDEGNSPNKKDFIEDLWERIQVLSRNGWKVKSVPKP
HLSFEAQLVAGVSHRFSPISCPPPTISQSSSEIVKGQEKHEADLKYPQRLRRLHIFPTNK
AENMQPVDRFVVEECILDVLLFFNGCRKECAFYLVSLPVPFRYEYLMAETIFSQLLLLPN
PPFRPIYYTLVIIDLCKALPGAFPSVVVGAVHALFDRISNMDMECRTRLILWFSHHLSNF
QFIWPWQEWAYVKDLPKWAPQRVFVQEVLEREIRLSYFDKIKQSIEDAVELEELLPPKAG
PNFRYHSDEGKESTDGHRLSKELVAMVRGRKTQGDIISWVDEKIIPVNGAKFALDVVSQT
LLDIGSKSFTHLITVLERYGQIISKLCPNEEMQLLLMDEVSAYWKNSTQMIAIAIDRMMG
YRLLSNLAIVKWVFSPANVDQFHVSDRPWEILRNAVSKTYNRIFDLRKEIQTLRKGLQAA
KEASEKAARELEEAKSIIEIVDGQPVPSENPGRLRRLQARADKAKEGEVTTEESLEAKEA
LLARGLEESKELLRLLFKSFVEVLTERLPPISADGDVPNLRAGDPNVNSSARDPEATTME
IDNENGGDNDSQLNGQNKKISHNVGELEQWCLCTLGYLKSFSRQYATEIWSHIAMLDQEI
FVGNIHPLIRKAASPVCADLPVKGLTFDFDPSSELEFTCIIRDKFFIMXSLTGHAQKYSD
VYSGTPSILL
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgggctggaggacgctgctgctgcggatcggcgacaggtgcccggagtacggg
ggctccgccgaccacaaggagcacatcgaaacttgttatggtgtgctttgtcgagaatac
gaacactccaaagatgcaatgtttgagtttctcctccaatgtgcagatcaattgcctcac
aagattcctttctttggagtattgataggtttgataaacttggaaaatgaagatttttcc
aagggtattgtcgatacaacacatgccaatttacaggatgccttgcataatgaaaatcgt
gacagaatcaggatattgctgcgatttctctgtggcctgatgtgcagcaaagttgtcctg
ccaaattctattattgaaacatttgaggcactattatcatctgctgcaacaatattagat
gaggaaaccggaaatccttcgtggcaaccacgtgctgatttctatgtttattgtatcttg
gcttcccttccatggggtggctcagaattgtttgagcaagttccagatgaatttgagaga
gttctggttggtatacagtcttatataagcattagaaggcattttgatgatattgctttc
tcagtctttgaaacagatgaaggcaactctcccaacaaaaaggatttcatcgaagattta
tgggagcgtattcaagttctttctcgcaatgggtggaaggttaagagtgttccaaaacct
cacctgtcgtttgaagctcagctggtagctggagtttctcaccgtttctccccaattagt
tgccccccacctactatctcgcaatcatcttctgaaatagtaaaaggtcaagaaaagcat
gaagctgatctgaagtatcctcaaaggcttcgtaggcttcacatatttccaacaaataaa
gctgagaacatgcaacctgtagatcgttttgttgttgaagaatgcatattggatgtgcta
cttttcttcaatggatgtcgcaaagaatgtgcattttatctggtcagcttacctgtgcct
ttccgttatgaatacctgatggctgagaccatattttcacagctactgttattgccgaat
ccccctttcaggccaatttactataccttggttattatcgacctttgcaaggcattgcca
ggtgcatttccttcagttgtggtaggagcagtacatgctctttttgacagaattagcaac
atggatatggagtgccgcacccgacttatcctatggttttcacatcacttgtcaaatttt
cagttcatttggccttggcaggagtgggcttacgtcaaggaccttccaaaatgggctcca
cagcgtgtttttgtccaagaagtattagaaagggaaattcgcttgtcctactttgacaaa
attaagcagagcatagaggatgctgttgaattggaagaactgttacccccaaaagctggg
cctaacttcagatatcatagtgatgaaggcaaagaaagcactgatggccacagactctcc
aaggaacttgttgccatggttagaggaaggaagacacaaggtgatattatttcatgggta
gacgaaaaaataattcctgtaaatggtgccaaatttgcacttgatgtagttagccagaca
cttctggacattggctcaaaaagtttcacccatcttatcactgttttggagagatatggt
caaataatatcaaagctgtgcccgaatgaagaaatgcagttattgttgatggatgaagtc
agtgcttattggaagaacagtacccagatgattgccatagctattgataggatgatgggt
tatcgcctactttccaatctggctatagtcaaatgggttttttctcctgctaatgttgat
caatttcatgtttcagatcgtccatgggagattcttagaaatgctgttagtaaaacatac
aatcggatttttgacctccggaaagaaattcagacactcaggaaaggtcttcaagctgct
aaagaggccagtgaaaaggccgccagagagttggaggaggctaaatctattattgagatt
gtagatggccaacctgtgccatctgaaaatccaggaaggctaagacgacttcaagcgcgt
gctgacaaagcgaaagaaggagaagtaaccactgaagaatctttagaagcaaaggaggcc
ctccttgctcgagggcttgaagaaagcaaggaattgcttaggttactattcaagagcttt
gttgaagtgctaactgaacgtttgccacctatttctgctgatggagatgttcctaattta
cgtgctggagacccgaatgtaaattcttcagcccgtgaccctgaagcaacaaccatggaa
atagacaatgaaaatggaggagataacgatagtcagctgaatggtcaaaacaagaaaatc
agtcacaatgttggagagcttgagcaatggtgtctctgcacattgggctatctcaagtcg
ttttctcgtcaatatgctactgagatctggtcccatattgccatgttggatcaggagatt
ttcgttgggaatattcaccctcttatccggaaagctgcttctccggtttgtgcagaccta
ccagtgaagggtctcacctttgattttgacccttccagtgagttggagtttacctgtatt
atacgcgacaaatttttcatcatgncttcactaactggacatgcccaaaagtactctgat
gtgtactcaggaactccatcgattctcctgtaa
DBGET
integrated database retrieval system
