KEGG   Oryza sativa japonica (Japanese rice): 4329963
Entry
4329963           CDS       T01015                                 
Symbol
CBP20
Name
(RefSeq) nuclear cap-binding protein subunit 2
  KO
K12883  nuclear cap-binding protein subunit 2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03013  Nucleocytoplasmic transport
osa03015  mRNA surveillance pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4329963 (CBP20)
  09122 Translation
   03013 Nucleocytoplasmic transport
    4329963 (CBP20)
   03015 mRNA surveillance pathway
    4329963 (CBP20)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4329963 (CBP20)
   03041 Spliceosome [BR:osa03041]
    4329963 (CBP20)
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     4329963 (CBP20)
Spliceosome [BR:osa03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    4329963 (CBP20)
SSDB
Motif
Pfam: RRM_1 DUF5721
Other DBs
NCBI-GeneID: 4329963
NCBI-ProteinID: NP_001388833
LinkDB
Position
2:complement(join(24583166..24583243,24583339..24583424,24583502..24583555,24584063..24584161,24584401..24584434,24584523..24584661,24585679..24585902,24586009..24586026))
AA seq 243 aa
MASLFKDPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEI
RKIIMGLDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWG
RGRSGGQVRDEYRTDYDPGRGGYGKMVQKELEAQRELVDYGGAFQPNAPPQYDRGDRKRG
YGDSYRNDRDYQRKRYRNDERSSQRAPDSEFKRDAIDSEKNPRFREKGDSDEEDDDYDKR
RRR
NT seq 732 nt   +upstreamnt  +downstreamnt
atggcgtccctcttcaaggacccgaccaagctgtccgcgtaccgggacaggcggttcacc
gggacgcaggaggagtacgaggcggcgctgcaggcgtcggtgacggtgtacgtcgggaac
atgtccttctacaccacggaggagcaggcctatgagctcttctcccgcgccggcgagatc
aggaagatcatcatgggactcgacaagaactccaagaccccctgcggcttctgcttcata
ctgtactactccagggaggatgctgaagatgcggtcaaatatattagtggaacaatgctt
gatgatcgcccaattcgtgttgattttgattggggctttgaagaaggcagacaatggggt
cgtggacggagtggtggacaagtaagggatgagtaccgcacggactacgatcctggaaga
ggtggctatggtaagatggttcagaaagagctagaagcacaacgtgagttagttgactat
ggaggtgcttttcaacctaatgcaccacctcaatatgacagaggtgacaggaagagaggg
tatggagattcttaccggaacgacagagattaccaacggaaacgttaccggaacgatgag
cgatcgtcgcaaagagcacctgactctgagttcaagagagatgcgattgattcggagaag
aatcctaggtttcgtgagaaaggtgattctgatgaagaagacgatgattatgataagaga
cgccggcgctga

KEGG   Oryza sativa japonica (Japanese rice): 4332822
Entry
4332822           CDS       T01015                                 
Symbol
ABH1, CBP80, OsJ_10823
Name
(RefSeq) nuclear cap-binding protein subunit 1
  KO
K12882  nuclear cap-binding protein subunit 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03013  Nucleocytoplasmic transport
osa03015  mRNA surveillance pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4332822 (ABH1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    4332822 (ABH1)
   03015 mRNA surveillance pathway
    4332822 (ABH1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4332822 (ABH1)
   03041 Spliceosome [BR:osa03041]
    4332822 (ABH1)
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     4332822 (ABH1)
Spliceosome [BR:osa03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    4332822 (ABH1)
SSDB
Motif
Pfam: MIF4G_like_2 MIF4G_like MIF4G DUF5798 RPW8
Other DBs
NCBI-GeneID: 4332822
NCBI-ProteinID: NP_001389083
LinkDB
Position
3:join(13031969..13032055,13032942..13033001,13033596..13033652,13034358..13034429,13034575..13034637,13035480..13035656,13036028..13036153,13036236..13036302,13036544..13036740,13037533..13037603,13039243..13039327,13039645..13039713,13040488..13040606,13040828..13040966,13041063..13041563,13041818..13042117,13042219..13042400,13042802..13042913,13043478..13043597)
AA seq 867 aa
MSAGWRTLLLRIGDRCPEYGGSADHKEHIETCYGVLCREYEHSKDAMFEFLLQCADQLPH
KIPFFGVLIGLINLENEDFSKGIVDTTHANLQDALHNENRDRIRILLRFLCGLMCSKVVL
PNSIIETFEALLSSAATILDEETGNPSWQPRADFYVYCILASLPWGGSELFEQVPDEFER
VLVGIQSYISIRRHFDDIAFSVFETDEGNSPNKKDFIEDLWERIQVLSRNGWKVKSVPKP
HLSFEAQLVAGVSHRFSPISCPPPTISQSSSEIVKGQEKHEADLKYPQRLRRLHIFPTNK
AENMQPVDRFVVEECILDVLLFFNGCRKECAFYLVSLPVPFRYEYLMAETIFSQLLLLPN
PPFRPIYYTLVIIDLCKALPGAFPSVVVGAVHALFDRISNMDMECRTRLILWFSHHLSNF
QFIWPWQEWAYVKDLPKWAPQRVFVQEVLEREIRLSYFDKIKQSIEDAVELEELLPPKAG
PNFRYHSDEGKESTDGHRLSKELVAMVRGRKTQGDIISWVDEKIIPVNGAKFALDVVSQT
LLDIGSKSFTHLITVLERYGQIISKLCPNEEMQLLLMDEVSAYWKNSTQMIAIAIDRMMG
YRLLSNLAIVKWVFSPANVDQFHVSDRPWEILRNAVSKTYNRIFDLRKEIQTLRKGLQAA
KEASEKAARELEEAKSIIEIVDGQPVPSENPGRLRRLQARADKAKEGEVTTEESLEAKEA
LLARGLEESKELLRLLFKSFVEVLTERLPPISADGDVPNLRAGDPNVNSSARDPEATTME
IDNENGGDNDSQLNGQNKKISHNVGELEQWCLCTLGYLKSFSRQYATEIWSHIAMLDQEI
FVGNIHPLIRKAAFSGLCRPTSEGSHL
NT seq 2604 nt   +upstreamnt  +downstreamnt
atgagcgcgggctggaggacgctgctgctgcggatcggcgacaggtgcccggagtacggg
ggctccgccgaccacaaggagcacatcgaaacttgttatggtgtgctttgtcgagaatac
gaacactccaaagatgcaatgtttgagtttctcctccaatgtgcagatcaattgcctcac
aagattcctttctttggagtattgataggtttgataaacttggaaaatgaagatttttcc
aagggtattgtcgatacaacacatgccaatttacaggatgccttgcataatgaaaatcgt
gacagaatcaggatattgctgcgatttctctgtggcctgatgtgcagcaaagttgtcctg
ccaaattctattattgaaacatttgaggcactattatcatctgctgcaacaatattagat
gaggaaaccggaaatccttcgtggcaaccacgtgctgatttctatgtttattgtatcttg
gcttcccttccatggggtggctcagaattgtttgagcaagttccagatgaatttgagaga
gttctggttggtatacagtcttatataagcattagaaggcattttgatgatattgctttc
tcagtctttgaaacagatgaaggcaactctcccaacaaaaaggatttcatcgaagattta
tgggagcgtattcaagttctttctcgcaatgggtggaaggttaagagtgttccaaaacct
cacctgtcgtttgaagctcagctggtagctggagtttctcaccgtttctccccaattagt
tgccccccacctactatctcgcaatcatcttctgaaatagtaaaaggtcaagaaaagcat
gaagctgatctgaagtatcctcaaaggcttcgtaggcttcacatatttccaacaaataaa
gctgagaacatgcaacctgtagatcgttttgttgttgaagaatgcatattggatgtgcta
cttttcttcaatggatgtcgcaaagaatgtgcattttatctggtcagcttacctgtgcct
ttccgttatgaatacctgatggctgagaccatattttcacagctactgttattgccgaat
ccccctttcaggccaatttactataccttggttattatcgacctttgcaaggcattgcca
ggtgcatttccttcagttgtggtaggagcagtacatgctctttttgacagaattagcaac
atggatatggagtgccgcacccgacttatcctatggttttcacatcacttgtcaaatttt
cagttcatttggccttggcaggagtgggcttacgtcaaggaccttccaaaatgggctcca
cagcgtgtttttgtccaagaagtattagaaagggaaattcgcttgtcctactttgacaaa
attaagcagagcatagaggatgctgttgaattggaagaactgttacccccaaaagctggg
cctaacttcagatatcatagtgatgaaggcaaagaaagcactgatggccacagactctcc
aaggaacttgttgccatggttagaggaaggaagacacaaggtgatattatttcatgggta
gacgaaaaaataattcctgtaaatggtgccaaatttgcacttgatgtagttagccagaca
cttctggacattggctcaaaaagtttcacccatcttatcactgttttggagagatatggt
caaataatatcaaagctgtgcccgaatgaagaaatgcagttattgttgatggatgaagtc
agtgcttattggaagaacagtacccagatgattgccatagctattgataggatgatgggt
tatcgcctactttccaatctggctatagtcaaatgggttttttctcctgctaatgttgat
caatttcatgtttcagatcgtccatgggagattcttagaaatgctgttagtaaaacatac
aatcggatttttgacctccggaaagaaattcagacactcaggaaaggtcttcaagctgct
aaagaggccagtgaaaaggccgccagagagttggaggaggctaaatctattattgagatt
gtagatggccaacctgtgccatctgaaaatccaggaaggctaagacgacttcaagcgcgt
gctgacaaagcgaaagaaggagaagtaaccactgaagaatctttagaagcaaaggaggcc
ctccttgctcgagggcttgaagaaagcaaggaattgcttaggttactattcaagagcttt
gttgaagtgctaactgaacgtttgccacctatttctgctgatggagatgttcctaattta
cgtgctggagacccgaatgtaaattcttcagcccgtgaccctgaagcaacaaccatggaa
atagacaatgaaaatggaggagataacgatagtcagctgaatggtcaaaacaagaaaatc
agtcacaatgttggagagcttgagcaatggtgtctctgcacattgggctatctcaagtcg
ttttctcgtcaatatgctactgagatctggtcccatattgccatgttggatcaggagatt
ttcgttgggaatattcaccctcttatccggaaagctgctttctccggtttgtgcagacct
accagtgaagggtctcacctttga

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