KEGG   Oryza sativa japonica (Japanese rice): 4330568
Entry
4330568           CDS       T01015                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4330568
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4330568
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4330568
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     4330568
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_NOL10_N Beta-prop_TEP1_2nd WDR55 ASA1 Beta-prop_WDR41 DSE1_N Beta-prop_EML_2 WD40_Gbeta Beta-prop_Vps41 Beta-prop_TEP1_C DUF244
Other DBs
NCBI-GeneID: 4330568
NCBI-ProteinID: XP_015626168
UniProt: A0A0P0VP77 Q6Z5M6
LinkDB
Position
2:complement(join(30508116..30508424,30508507..30508632,30508856..30509014,30509154..30509324,30509635..30509754,30509826..30510185,30512061..30512947,30513051..30513624,30514640..30514768,30515537..30515755,30515833..30515989,30516235..30516284,30516830..30517588))
AA seq 1339 aa
MATPTGNPNPNPNPSTPFEVSMLFKPPSNAPAAAPIFPGGPAAGPPPPSAAYSYPPATPP
FHRAPFLHYPQDPMAAPHMPRPVISFPMPTPNPAAIPSAAAAAAAAAGPSQNHGARLMQL
LGSSGPAHLDSSASMPPPASEFAAAQPPQPIPAMPSAPPARMLSSTSSKMPRGRLLGGGD
RAVHDVDSRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNI
NTALRSLLRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDEDSKPQITGKIEI
AIQIVGDAESYHPRICWHSHKQEILFVGIGNCVLRIDTTKVRRGRDVSAEEPIKCHLDKL
IDGVRLVGKHDDDVTDLSLSQWMTTRLASGSKDGTVKIWDDRKPVPLSILKPHDGQAVYS
VAFLTAPEHPDHINLVTAGPLNREVKIWASANEGGVLLPSDSETWNCTQTLELVSSLEPR
VEEAFFNQVTVLPQASIILLANAKKNAIYAVHVEYGTDPASTRLDYIADFTVAMPILSLT
GTHESQPGNDQVVQVYCVQTMAIQQYGLDLSLCSPPTSETTGLGRDPSISRVHETPLEVV
GAESSMPTSFTDSYSVGSPSKSSTVDQQSELDPKPSAPPLTYTEGDGSVHLPSASLASNM
DPSGSGSSLGNLEMDQPAFDYAMNRNVEPKILTRQDTPMPKDNFGKDDPRDGRNDVTMLP
NPHLMFKVGGNTTHLVTPSEIISGALSSAESNHVPKSDGVKIQDGTSSGHQMAEVEPKHT
NEHTFDQNLDLEVAQVVCENTKQAGSSEQTVKMISERSVTTDKYSVEESQTSCDRSISEH
TGAADESVTKKPVEVPEKSDYSSASVEQSSSYTKKEKIMHPQASGQSSPSTSAFNSTESS
HEPPSSAYPPINSFPEVTTQGMLQQLIAMHKDLQKQLGTIVVAPLAKEGKRIEASLGRTM
EKSIKANLDALWVRIQEENAKREKAERERMQQMITLITNSISKDLPATLEKSLKKEISSL
GPVIARAITPIIEKCSASAVADSIQKVVGDRVVNQLDKSVSAKLEATVARQIQMQFHTSV
KQTLQDALRASLEAFLVPAFEQSCKTMFEQVDSAFQKGMSEHTVAIQQQVEATHTPLAQT
LKDTISSASSITQNLTAELLDGHRKLLALLASGNAKAHSTNVLQPNNVPVTGPPEVEAPL
DPMKELGRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLRALCSMVPVPLNQGVLLALL
QQLAVDIATDTPRKIQWMTDVAMAINPTDPVIAMHVKPIFEQVYNALLHLRSLPTTSPSD
STSIRLFMHVINSVLLSYK
NT seq 4020 nt   +upstreamnt  +downstreamnt
atggcgaccccgaccggaaaccctaatcctaaccccaaccctagcactcccttcgaggtc
agcatgctgttcaagccgccctccaacgcccccgcggccgcccccatcttccccggcggc
cccgccgcgggcccgccgccgccgtccgccgcgtactcctacccgcctgcgactcccccc
ttccaccgcgccccgttcctccactatccgcaggaccccatggcggcgccgcacatgccc
cgccccgtcatctccttcccgatgccgaccccgaacccggccgctatccccagcgccgcc
gccgccgccgccgcagccgcggggcccagccagaaccacggcgcgcgcctcatgcagctc
ctggggagctccgggccggcccacctcgattcctccgcctccatgcccccgccggcgtcg
gagttcgccgccgcgcagccgccgcagccgatccccgcgatgccgtcggcgccgccggcg
aggatgctgagcagcacgagcagcaagatgccgcgggggcgccttctcggcggcggggac
agagcggtgcacgacgttgactcgaggctgccgggggaggcgcagccgccgcagctggag
gtgacgccgatcaccaagtacacatcggatcccgggctcgtgttgggcaggcagatcgcc
gtgaacaggacgtacatcgtgtatgggcttaagctcgggaacatccgcgtgctaaacatc
aacaccgcgctccgttcgctccttcgtggccacacacagagggtgacagatatggctttc
tttgctgaggatgttcatcgtttagcaagtgcaagtgtagatggtcggatatatgtttgg
aagattgatgagggtcctgatgaggacagcaaaccacaaattacaggaaagattgaaatt
gccatccagattgttggcgatgctgaatcttaccatccaaggatctgttggcactctcat
aagcaggagattctgtttgttggcattggaaactgtgtcttaagaatagacacaactaaa
gtgcgacggggaagggacgtaagtgcagaggaacctatcaagtgtcatcttgacaagctc
attgatggtgtgcgcttagttggtaagcatgatgatgacgttacagatttgtccttatct
caatggatgactacccgactggcttcaggatcaaaagatggcacggtaaaaatttgggat
gatcgcaagccagtgcctctatcgattctgaagccacatgatggtcaagctgtttattct
gttgcttttctcacggcacctgagcatccagaccatataaacctcgttacagcaggtcct
ctaaaccgagaagttaaaatttgggcttctgccaatgaaggaggtgtgttgttgccaagt
gattccgagacttggaattgcacacagacattggaacttgtcagctcactggaacccagg
gtagaggaggcatttttcaaccaagttaccgtgctgcctcaagcaagtattattttactt
gcaaatgctaagaaaaatgctatttatgctgtgcatgttgagtatggcacagatcctgct
tcaactcgcttggattatatagcagattttacagttgcaatgcctattttaagtctcact
ggcacacatgaaagccaacctggcaatgaccaagttgtacaagtttattgtgttcaaaca
atggctatccagcagtatgggctggatttatcactctgttcacctcctacaagtgaaact
actggacttggaagggatccatctatttctcgtgttcacgagacacctctggaagtggta
ggagcagagtcatccatgccaactagcttcaccgattcttattccgtcggttctccaagt
aaatcatcaaccgttgatcaacagtctgaacttgatcctaaaccatcagctccaccactt
acatacacagaaggtgatggttctgttcatcttccatcagcctctcttgcatcaaacatg
gacccttctggatcaggatcgtcactaggtaaccttgaaatggaccaaccagcttttgat
tatgcgatgaacagaaatgtggagcctaaaattttgactaggcaagatacacccatgcct
aaggacaactttggaaaggatgatccaagagatggtcgcaatgatgttacaatgcttcca
aatcctcatttgatgtttaaggtaggagggaacactacacacttggtaactccatctgaa
atcatatctggcgctctatcttcagctgagagcaaccatgtccctaagtctgatggagtg
aaaatccaggacggcacaagtagtggtcatcagatggcagaagtagaaccaaaacatacc
aatgagcacacatttgatcaaaatttggaccttgaagtagcacaggttgtttgtgagaat
acaaagcaagctggttcatcggagcaaactgttaaaatgattagtgagcgctcggtaaca
actgataagtacagtgtggaagaatcacagacatcatgtgatcgatccatttctgagcat
actggtgctgctgacgaaagtgttacaaaaaaacctgttgaagtgcctgagaaaagtgat
tattcctctgcttctgtggagcaatcatcttcatataccaagaaggagaaaattatgcat
cctcaagcatctgggcagtcatctccttctacaagcgcattcaactcaactgagtcttca
catgaacctccgagtagtgcataccctcctatcaattcatttccagaagttactacgcaa
gggatgcttcaacagctcatagcaatgcataaggacttgcaaaagcagctgggtactatt
gttgttgcacctcttgcaaaggaaggcaaaagaattgaggcatcattagggcgcaccatg
gagaaatctatcaaggctaaccttgatgccttgtgggttcgtatccaggaggagaatgca
aaacgagaaaaggctgaaagagagcgaatgcagcaaatgattactcttatcactaattca
ataagcaaggaccttcctgctactttggagaagtcactgaagaaagaaatttcttcactt
ggacctgttattgcacgggcaataacacctattatcgagaagtgttcagcctctgcagtt
gctgattcaattcagaaagtggttggtgacagagtggtgaatcagctggacaagtctgtt
agtgcaaaacttgaagctactgttgctagacaaatccaaatgcagttccacacatctgta
aaacagacccttcaggatgctttacgtgctagcctggaagctttccttgttccagcgttt
gaacaatcttgcaagacaatgtttgagcaagtcgatagcgcattccagaaaggaatgtct
gaacacactgttgctattcagcagcaagttgaggcaacacataccccattggcgcaaact
ttaaaggataccatctcttctgcgtcttcgatcacccagaatcttacagcagagttgctt
gatggccatcgcaaactattggcgctgcttgcatcgggcaatgcaaaagcacatagtaca
aacgttttgcagcccaacaatgtccctgtgactggtccaccggaggttgaggctccatta
gatccaatgaaggagttgggcagactgatatctgaacgcaaatttgacgaggcatttaca
atggctcttcaaagaagtgacgtgtcgatagtgtcttggttgtgctctcaggttgatttg
cgcgcattgtgctcaatggtccccgtcccccttaaccagggggtcctcctagccctattg
cagcagctagcagttgacattgctactgatacgccgcggaagattcagtggatgacagat
gtcgctatggcgataaatccaaccgatccggtgatcgccatgcacgtgaagcctattttc
gagcaagtctacaatgcattgctccacctacgctcgctccccaccaccagcccatcagac
agcaccagcatccgcttattcatgcatgtaattaattctgttctgcttagctacaagtga

KEGG   Oryza sativa japonica (Japanese rice): 4340825
Entry
4340825           CDS       T01015                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X2
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4340825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4340825
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4340825
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     4340825
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40_WDHD1_1st WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_IFT122_1st WD40_Prp19 WD40_MABP1-WDR62_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR41 Beta-prop_EML_2 ASA1 Beta-prop_TEP1_2nd DSE1_N WDR55 Beta-prop_NOL10_N DUF445 Beta-prop_Vps41 WD40_Gbeta Beta-prop_IFT140_1st CFAP251_N Beta-prop_TEP1_C Beta-prop_EDC4L DUF6277
Other DBs
NCBI-GeneID: 4340825
NCBI-ProteinID: XP_015643577
UniProt: A0A0P0WVR0 Q5ZA32
LinkDB
Position
6:join(11400163..11400933,11401577..11401626,11401719..11401875,11401963..11402181,11402666..11402794,11403867..11404440,11404537..11405396,11406019..11406378,11406451..11406570,11407092..11407262,11407387..11407545,11407692..11407817,11408025..11408333)
AA seq 1334 aa
MASPSGNPNPTPNQPFELNRLFKQHPPASASASAAPNPNHHPAPAGIFPGAAAPAPHHGV
VVPPPMTSGGGPYSYPPATPPFHRGPYLPPYPNDPHLAFAGNPNPPAAAAAPNPAGARLM
QLLGNTAPTHLESAVSMPMPSEFSAAAAVAPPAPLPAMPSAPPARMPSSSSSKMPRGRLL
GPGDRAVHDVDSRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIR
VLNINTALRSLLRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDEQNKPQITG
KIEIAIQIVGDAETYHPRICWHSHKQEILFVGVANCVLKIDTTKVGRGMDFSREEPLKCP
LDKLVDGVHLVGKHDADITDLSLSQWMTTRLASASKDGMVKIWDDRKSVPLSVLKPHDGQ
AVYSVSFLTAPEHPQHINLITAGPLNREVKIWASTNDEGWLLPSDSETWRCTQTLELVSS
LEHRFEEAFFNQVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPI
LSLTGTHESQLDTEQIVQVYCVQTMAIQQYGLELSLCLPPTADNPGFGRDPAISHVYERP
PAEVTVVESSKETSLIDSSVVGPTKPASNNQALEANVPSQVQSTTPPSSIDLGYLEEGAL
RRGPSRGPSLGDRDIDPSSLDYSSKKRMDSDGASGQGSFGRKDSFGKEEPRGSQGDGTKT
SDPRPMFKVGGNATHLITPSEIISGVLSSPETIATGSSQNVEVDAKHVDGRKSERSVELE
AVKETQIVHEKRERPPKTAEQTVNTISERLVTTDKYSVEDSQSRSADGSVSTLLKHPSGA
GDENTVSEAPEKTSDGYASRNLQLTLATKEEKVLHPQVSRQLSPSTSTYNSADSSHEPPS
NVNPPIDNVPQVGIQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIK
ANIDAMWARFQEENAKHEKAERERMQHITTLITTAVNKDIPVMLEKSLKKEISSVGPAVA
RTTAPIIEKSLSSAVSDSLQKVLGDKVVNQLDKSLSTKLEATVARQIQTQFHTSAKQALQ
DALRSSFESTIIPAFEQSCKTMFEQVDGAFQKGMSEHGAAIRQQVATAHTPLAQTLRETI
ASASSINQGLASELLDGQRKLLALVSSGGSLSHNTSVLQPSNGPVASLPEVDAPLDPVKE
LSRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLHELCRMNPIPLNQGVLLALFQQLAC
DIVNDTPRKLEWMTAVAVAISPTDPMIAVHVRPIFEQVYGVLNHQRSLPASSSSEATNIR
LIMHVINSVLLTYK
NT seq 4005 nt   +upstreamnt  +downstreamnt
atggcgtctccctcggggaaccctaaccccacccccaaccagcccttcgagctcaaccgc
ctcttcaagcagcatccccccgcctccgcctccgcctccgccgccccaaaccctaaccac
caccccgcccccgccggcatcttccctggcgccgccgcccccgccccccaccacggcgtc
gtcgtcccgccgccgatgacgtccggtggcgggccctactcgtacccgccggccaccccg
cctttccaccgggggccttacctccctccctaccccaacgacccccacctcgccttcgcc
gggaaccctaacccccccgccgccgccgctgctcccaacccggcgggcgccaggctcatg
cagctgctcgggaacacggcgcccacgcacctcgagtcggcggtgtccatgccgatgccg
tcggagttctccgccgccgcggctgtggcgccgcccgcgccgctgcccgcgatgccgtcc
gcgccgcccgcgaggatgccgagcagcagcagcagcaagatgccgagggggaggctcctg
gggccaggggaccgggccgtgcacgacgtggactcgcggctgccaggcgaggcgcagccg
cctcagctggaggtgacgcccatcaccaagtacacgtcggacccggggctggtgctcggc
aggcagatcgccgtgaaccggacctacatcgtgtatggcctcaagctcggcaacatccgc
gtgctcaacatcaacaccgcgcttcgctcgctcctccgcgggcacacacagagggttacg
gacatggctttctttgcggaagatgtccatcggttagcaagtgcaagtgtagatgggcgg
atctatgtatggaagattgacgagggacctgatgagcagaataaaccacaaatcacagga
aagattgaaattgccatacagattgtaggagatgctgaaacttaccatccaagaatatgt
tggcactcccataagcaagagattctgtttgttggagttgctaactgcgtcttaaaaata
gacacaacaaaagtaggaagaggaatggacttcagtagagaagaacctcttaaatgccca
ctcgacaagctggtcgatggcgttcacttggttggtaaacatgatgcagatattacagat
ttgtccctatctcaatggatgactactcgtcttgcttccgcatcaaaagatggcatggta
aagatctgggatgatcgcaaatctgtgcctctgtctgttctgaaaccacatgatggtcaa
gctgtttactctgtttctttccttacggcacctgagcatccccagcatataaatctcatc
acagcaggccctctcaatcgagaagtaaaaatttgggcttccactaatgatgaaggttgg
ttgttgccaagtgactctgagacatggagatgcactcaaacactggagctcgtgagttct
ctggaacataggtttgaggaagcatttttcaaccaagtagcagtgttgccacaagctagc
cttattttgcttgcaaatgccaaaaagaatgctatttatgctgtgcatgttgaatatggc
ccagatcctgcttctactagattggactatatagcggattttacagttgcaatgcctatt
ctaagtctgacaggaacacacgaaagccaactggatactgaacagatagttcaagtgtat
tgtgtccagacaatggctatccagcagtatggattggaattatctctttgtttgcctcct
acagctgataatcctgggtttggtagagatccagctatttctcatgtgtatgagagacct
ccagcagaagtaactgtggtggagtcatccaaggaaactagtctgattgattcctctgtt
gttggtccaactaaaccagcaagcaataatcaggccctagaagcgaatgtcccttcgcaa
gttcaatccacaactcctccatcaagcattgaccttggatatttagaagaaggtgccttg
agaagaggtccttcaagaggtccatctcttggtgatcgtgatatagacccgtcatctctt
gattattcaagtaagaaaaggatggattctgatggtgcaagtgggcaaggttcatttggt
aggaaggatagtttcggaaaggaagagccaagaggcagccagggtgatggtacaaaaacc
tcagatcctcgtcctatgtttaaggtgggaggaaatgctacgcacttgataactccatct
gaaattatttcaggtgtcctttcgtctccagaaacaattgctactggcagttctcaaaat
gtagaagtggatgctaaacatgtggatgggagaaaatcagagcgaagtgttgaacttgaa
gctgtcaaggagacacaaattgttcatgagaaaagggagagacctcccaagactgctgaa
caaactgtaaacacaatcagtgaacgcttggtaacaactgacaaatacagtgtggaagat
tcacaatctcggagtgctgatggatcagtatctacacttttgaaacatccttctggtgct
ggggatgaaaacactgtaagtgaagctccagagaaaactagtgatggttatgcttctagg
aacttgcagttaaccttggctaccaaggaggagaaagttcttcatcctcaagtttctagg
cagttatctccttctacaagcacttacaactctgctgattcctctcatgaacctccaagc
aacgtaaaccctcctattgataacgttccacaagttggtattcaagaaacactacaacag
ctaatggccatgcatagtgacctgcaaaagcagctgagcacaattgtatctgctcctatt
gcaaaggaaggcaaaaggatcgagacatctttaggtcgtaacatggaaaagtccattaag
gcgaacattgatgccatgtgggcccgtttccaggaggaaaatgcaaagcatgaaaaggct
gaaagagagcgtatgcagcatatcactactctcatcacaactgctgtaaacaaggatatt
cctgttatgctggagaagtccctaaagaaagaaatatcttcagttggacctgctgttgca
cggacaacagctcctatcattgagaaatcactatcttctgctgtttctgattcactccag
aaagttcttggtgacaaggttgtgaatcaactggacaaatccctaagtacaaaacttgaa
gctacagtagctaggcagatccaaacgcagtttcatacgtctgccaagcaggcccttcag
gatgctttgcgctctagctttgagtcaacaatcattccagcatttgaacaatcttgcaag
acaatgtttgagcaagtagatggtgcattccagaaaggcatgtctgagcatggtgctgct
atccgtcagcaggttgcaacagcacatactccactagcacaaactctcagggaaacaatc
gcttcagcatcatcgataaaccagggtcttgcatcagagttgcttgatggacagcgtaag
cttttggcacttgtttcatcggggggctccttatcgcataatacaagtgttctgcagcct
agtaatggaccagtggctagtctccctgaggtcgatgctccactggatcctgttaaggag
ctaagcagactgatatctgagcgcaaatttgatgaagcatttacaatggctcttcaaaga
agtgatgtctccatagtgtcttggctgtgctctcaggtcgatctgcacgagttatgcaga
atgaaccccattcctctcaaccaaggggtcctgttggcccttttccagcaactagcatgt
gacatcgtcaatgacacgcccagaaagcttgagtggatgacggctgttgctgttgcaatc
agtccaacagatcctatgatcgctgtgcatgtgaggccgatattcgagcaggtctatggc
gttttgaaccaccaacggtcactgccagcaagcagttcctcggaagcgaccaacatccgt
ttgatcatgcacgtaatcaactcggtgctgctgacctacaagtga

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