KEGG   Oryza sativa japonica (Japanese rice): 4330895
Entry
4330895           CDS       T01015                                 
Symbol
OsRFC3, RFC3
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4330895 (OsRFC3)
   03410 Base excision repair
    4330895 (OsRFC3)
   03420 Nucleotide excision repair
    4330895 (OsRFC3)
   03430 Mismatch repair
    4330895 (OsRFC3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4330895 (OsRFC3)
   03036 Chromosome and associated proteins [BR:osa03036]
    4330895 (OsRFC3)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4330895 (OsRFC3)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    4330895 (OsRFC3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    4330895 (OsRFC3)
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    4330895 (OsRFC3)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     4330895 (OsRFC3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    4330895 (OsRFC3)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_lid_RFC1 RCF1-5-like_lid AAA_assoc_2 AAA_11 AAA_22 AAA_16 DNAX_ATPase_lid AAA_5 ATPase_2 nSTAND_NTPase5 AAA_30 DUF815 AAA_14 AAA_7 RuvB_N AAA_24 bpMoxR AAA_19 nSTAND3 ResIII ABC_tran AAA_3 TniB MCM AAA_28 AAA_2 SLFN-g3_helicase TIP49 AAA_18 Mg_chelatase
Other DBs
NCBI-GeneID: 4330895
NCBI-ProteinID: NP_001403878
LinkDB
Position
2:complement(join(33219017..33219116,33219744..33219812,33219908..33219971,33220088..33220217,33220603..33220684,33220873..33221032,33221125..33221204,33221604..33221820,33222575..33222758))
AA seq 361 aa
MAGATAATPMDIDAAAPPPGAAAKGKAPLSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVD
TIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYGNMILELNASDERGIDVVRQ
QIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNK
IIPALQSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNIL
QSTHMASKQITEEAVYLCTGNPMPKDIEQIAYWLLNESFSTSFKCISDMKMRKGLALVDI
IREVTMFVFKIQMPSDVRIKLINDLADIEYRLSFACNDKLQLGALISTFTGARTAMVAAA
H
NT seq 1086 nt   +upstreamnt  +downstreamnt
atggcgggagccaccgccgccactccgatggacatcgacgccgccgcgccgccgccgggg
gcggccgccaagggcaaggcgcctctctcctccactcccggcggtagggccgcgccctgg
gtcgagaagtaccgcccccaatccctcggcgatgtcgccgcccaccgcgacatcgtcgac
accattgataggcttacaaatgagaacaggcttccacatttgttgctttatgggcctccg
ggcactgggaaaacatcgacaatactggccgttgcaaggaagttgtatgggtcacagtat
ggcaacatgattcttgaactcaatgcatcagatgagcgtggtattgatgttgtaaggcag
caaatccaagacttcgcaagtgcccgcagtctctctttcggagcaaagcaatctgttaag
atggttctattggatgaagcagatgccatgaccaaggatgcacagtttgcattgcgaaga
gtcattgagaagcatacaaggagcacaaggtttgcgctgatatgcaaccatgtgaacaaa
atcattccagcactgcaatcaaggtgcaccaggtttagatttgcaccccttgatggcact
catgttagggaacgtcttaaacatataatacaatccgaggggcttgatgtagatgacggt
ggtttgacagcccttgtgcggttaagtaatggtgatatgaggaaggctttgaacatattg
cagtcaacacacatggcatctaagcaaataacagaggaagctgtgtacctttgcacagga
aaccccatgccgaaagacattgaacagatagcatactggttgctgaatgaatcattttca
accagcttcaaatgtatatctgatatgaagatgagaaaaggactggccttggttgatatc
atacgggaggtcactatgtttgtgttcaaaatacagatgccatctgatgtacgcataaag
ctgattaatgatctggctgatatcgagtaccggctaagctttgcttgcaatgacaagtta
cagctgggggcgctgatatcaactttcacgggtgctcgcacggctatggttgctgctgcc
cactaa

KEGG   Oryza sativa japonica (Japanese rice): 4334389
Entry
4334389           CDS       T01015                                 
Symbol
OsJ_12910, OsRFC5, RFC5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4334389 (OsJ_12910)
   03410 Base excision repair
    4334389 (OsJ_12910)
   03420 Nucleotide excision repair
    4334389 (OsJ_12910)
   03430 Mismatch repair
    4334389 (OsJ_12910)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4334389 (OsJ_12910)
   03036 Chromosome and associated proteins [BR:osa03036]
    4334389 (OsJ_12910)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4334389 (OsJ_12910)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    4334389 (OsJ_12910)
  DNA Replication Termination Factors
   ELG1-RFC complex
    4334389 (OsJ_12910)
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    4334389 (OsJ_12910)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     4334389 (OsJ_12910)
  Check point factors
   HRAD17(Rad24)-RFC complex
    4334389 (OsJ_12910)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 Sigma54_activ_2 DUF815 RuvB_N AAA_lid_RFC1 AAA_22 AAA_5 ABC_tran Mg_chelatase AAA_2 AAA_16 RsgA_GTPase nSTAND6 AAA_29 nSTAND3 FtsK_SpoIIIE nSTAND1 TsaE AAA_24 ATPase_2 NB-ARC RNA_helicase MobB
Other DBs
NCBI-GeneID: 4334389
NCBI-ProteinID: NP_001389222
LinkDB
Position
3:complement(join(33936501..33936559,33936670..33936715,33936956..33937030,33937115..33937184,33937358..33937456,33937575..33937711,33938110..33938291,33938384..33938552,33938894..33938926,33939028..33939138,33939254..33939337))
AA seq 354 aa
MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG
AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN
RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQY
PFTSNQVAPPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPESILKKLLAE
LLKKLDSDLKHEICHWAAHYEHKMRLGSKAIFHLEAFVAKFMSIYKEFLVSTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtggacaagtacaggccgaaaaccctagacaaggtcaccgtccatgaccag
gtcgcgcaaaacctcaagaagctggtggcggagcaggattgcccgcacctgctcttctat
gggccgtcggggtccgggaagaaaaccctagtcatggccctcatcaagcagatgttcggc
gcaggcgcggataaggtgaagatggagaacaagacatggaagatcgatactgggtcgagg
aatattgagatagaactggcaatgttgtcgagcgcccaccatgtggagatgaaccccagc
gatgctgggtttcaggacaggtatgttgttcaggaagtcattaaagagatggcgaagaat
aggccaattgatgccaagggcaagagagcatttaaagtccttgtccttaatgaagtcgac
aagctctcacgagaagcccagcattcccttcgtaggacaatggagaagtacagtgcatca
tgcaggctgatattgtgctgtaatagctcatcaaaggtgacagaggctgtaaggtctcgt
tgcttgaacgtgcgagtgaatgcacccagtgaagaccagatcgtccaagttctggagttc
attgggaagaaagaaaatctgcagcttccatttggatttgctgctaggatagcagcacaa
tcgaaccgtaacctgagacgagcgatactgttttttgagacctgcaaagtccagcaatac
ccatttacatcaaatcaagtagcacctcctcttgactgggagcaatatgtgtcagaaata
gcagctgatatcatgaaagaacaaagccctaaaaggctatttgctgtgcgccagaagttc
tacgaattacttgtgaattgtatcccacctgaaagcatcttaaagaagttgttggcggag
ttactgaagaaattagactctgacttgaaacatgaaatttgtcactgggctgcacactat
gaacacaagatgcgtcttgggtccaaggccatttttcacctagaagctttcgtcgccaag
ttcatgagcatctacaaggaatttcttgtctctacatttggctga

KEGG   Oryza sativa japonica (Japanese rice): 4336704
Entry
4336704           CDS       T01015                                 
Symbol
OsRFC4, RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4336704 (OsRFC4)
   03410 Base excision repair
    4336704 (OsRFC4)
   03420 Nucleotide excision repair
    4336704 (OsRFC4)
   03430 Mismatch repair
    4336704 (OsRFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4336704 (OsRFC4)
   03036 Chromosome and associated proteins [BR:osa03036]
    4336704 (OsRFC4)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4336704 (OsRFC4)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    4336704 (OsRFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    4336704 (OsRFC4)
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    4336704 (OsRFC4)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     4336704 (OsRFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    4336704 (OsRFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 nSTAND_NTPase5 AAA_22 Rad17 AAA_lid_RFC1 Mg_chelatase Viral_helicase1 AAA_16 AAA_5 RCF1-5-like_lid AAA_11 nSTAND3 AAA_assoc_2 AAA_25 AAA_19 AAA_28 RuvB_N RNA_helicase MeaB AAA_24 DNAX_ATPase_lid AAA_3 AAA_30 ABC_tran NPHP3_N SLFN-g3_helicase bpMoxR NTPase_1 DNA_pol3_gamma3 T2SSE DUF6120 KTI12 DNA_pol3_delta_C IstB_IS21 AAA_18 MCM
Other DBs
NCBI-GeneID: 4336704
NCBI-ProteinID: NP_001406737
LinkDB
Position
4:join(29103391..29103558,29103668..29103774,29103886..29103987,29104535..29104730,29105440..29105568,29105645..29105839,29105931..29106041)
AA seq 335 aa
MDASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQVIARDGNMPNLILSGPPG
TGKTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVI
LDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL
GRLMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPH
PLHVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKE
TGFAHMRICDGVGSFLQLSGLLAKFALVRETAKAS
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggccgcctccagctcctccgcccccgccctcgccgacgcctacgacatcccgtgggtg
gagaagtaccgccccacccgcgtcgccgacgtcgtcggcaactccgacgccgtcgcccgc
ctccaggtcatcgcccgcgacggcaacatgccaaacctaatcctctccgggcctccgggc
accgggaagactacgagcatcctgtcgctggcacacgagctgctcggacctagctaccgc
gaggccgtgctcgagctcaatgcctcggacgacaggggcctggatgtggtgcggaacaag
atcaagatgtttgcgcagaagaaggtcacgctgcagccggggaggcacaagatcgtcatc
ttggatgaggctgacagcatgacatcgggagcacagcaagcactgagacgaacaatggag
atttattctaacaccacaaggtttgcgcttgcatgcaacacttcatctaagatcattgaa
cccattcaaagccgttgtgctattgtacggttctcaaggctttcagatcaggagattctt
ggccgactcatgattgtggtagcagctgagaaggttccttacgtgccagagggacttgaa
gctatcatctttactgctgatggtgacatgaggcaagctttgaacaacttgcaagctaca
gttagtgggttccgttttgttaatcaagaaaatgtgttcaaggtgtgtgatcaaccacat
ccgttgcatgtcaagaatatggtgaaaaatgtgcttgatggaaagtttgatgaggcttgc
tctgctctgaagcaattatatgatttgggctactctcccactgacataatcactactctc
ttccgggttatcaagaactacgacatggctgaatatctgaagctggaattgttgaaggaa
accggatttgctcacatgagaatctgcgatggtgttggctcatttcttcaattatcaggc
cttctggcaaagtttgcgttggtgagagaaacagcaaaagcatcatga

KEGG   Oryza sativa japonica (Japanese rice): 4349480
Entry
4349480           CDS       T01015                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4349480
   03410 Base excision repair
    4349480
   03420 Nucleotide excision repair
    4349480
   03430 Mismatch repair
    4349480
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4349480
   03036 Chromosome and associated proteins [BR:osa03036]
    4349480
   03400 DNA repair and recombination proteins [BR:osa03400]
    4349480
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    4349480
  DNA Replication Termination Factors
   ELG1-RFC complex
    4349480
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    4349480
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     4349480
  Check point factors
   HRAD17(Rad24)-RFC complex
    4349480
SSDB
Motif
Pfam: RCF1-5-like_lid RFC_C NET2A_C AAA_lid_RFC1 DUF5349
Other DBs
NCBI-GeneID: 4349480
NCBI-ProteinID: XP_015613745
LinkDB
Position
10:complement(join(23511594..23511667,23511791..23511929,23512038..23512118,23512212..23512281,23512387..23512482,23513102..23513238,23513314..23513492,23513704..23513866,23513986..23514018,23514114..23514224,23514334..23514945))
AA seq 564 aa
MAPPATTLSDALDHDRRRDARRYRTFLPPSQLVLGLHRLGFACIPRSGAPLTRPRTAPSS
VPHQPPPRREAPQPQVANAAVAERRPLREREEAAAAAAAAAKRIHDHHTPAESKAEAASE
PQVSAGDHSTQSSDHSASAVAVGRGGSIWVRVLPKSVAMVDSPQTSEESTPTAEDKYIWA
DKYRPNFLNDFICNKDAALELYNQVTAQECNHIIFEGPTSVGKRSMVSALIWDAFATDNL
KIEEQTKRFELKGEIAKHIDIRVKISSHHVEVNLADIHGYEKHVITTLLNESIPSPNSIC
SHANCRVIVVHDADKLSSDLQHYIGWFLGRYVGCNKIMFCCSDASNLEAVRHLCKVVTLK
PPSSDEIIKVLEYIAVQESIDLPRDIARRITMSSGNNLRQAIRSFEATWKANYAFLEGHA
ILTGWEEEISNVAKKILEEPSPKQLYVIRGKIRKLIEHNVSPYFIFSNLVAELKRDRDEE
FQNSIDQLASELNHIKDCARQKEQCESGDTGLEIRNINIEGFAKEGHDQRETIQCFIKIE
EFTVRFMGFYRSLKAKNMNRGGVL
NT seq 1695 nt   +upstreamnt  +downstreamnt
atggctcccccggccaccaccctctccgacgcgctcgaccatgaccgccgccgcgacgcc
cgacgctaccgtaccttcctgccgccgtcgcagctcgtgctcggtctccaccgcttgggc
ttcgcttgcatccccagaagcggcgcccccctcacccgcccccgcaccgcccctagctcc
gtgccccaccaaccgccgccgcgccgggaggcgccccagccgcaggtagccaatgccgcc
gtcgccgagaggaggcctttgagggagagagaggaagccgccgccgccgccgccgccgcc
gccaaacgcatccacgaccaccacacgccggctgaatccaaagctgaagctgcttctgag
ccacaagtgtccgccggcgaccacagcacgcagagctccgaccacagcgcctccgccgtc
gccgtcgggagaggagggagcatctgggtccgggttttgcccaaatcggtcgccatggtg
gattcgccacagacttctgaagaatccacacccacggcagaggacaagtacatctgggca
gacaagtatcgccccaatttcctcaacgatttcatctgcaacaaggacgctgcccttgag
ctctacaaccaggttaccgcacaagaatgcaaccatatcatatttgaaggcccgacctcc
gtcggaaagaggagcatggtgtcggcactcatatgggatgcttttgctactgataatctc
aagatagaggaacagacaaagagattcgagctgaagggagaaattgcaaaacacattgat
atcagagtgaagatttcaagtcatcatgtggaggtaaatttggctgacatacacggctat
gagaagcatgtcattactactttgttgaatgaatccatcccatcaccaaactccatttgc
agtcatgccaactgcagagtgatcgtcgtccacgacgctgataaactctcatctgatctt
caacattatattggatggtttctggggaggtatgtaggatgcaataaaatcatgttctgc
tgttctgatgcttcaaaccttgaggctgtcaggcatctctgcaaggttgtgacacttaag
ccaccttcatctgatgagataatcaaggtcctagagtacattgcagtgcaagagagcata
gatctgcctcgtgatattgctaggagaataacaatgagctcaggcaataatctccgacag
gcaatacgttcttttgaagctacttggaaagcaaactatgccttcctagaaggccatgcc
attttgacaggatgggaagaggaaatctccaatgtagccaaaaaaatcttggaggaacca
agcccaaaacagctgtatgtcattaggggtaagatcagaaaactgattgaacataatgtg
tcaccttacttcattttctctaatctggttgctgaactgaaaagggacagggatgaggag
ttccaaaatagcattgatcaactagcatcggagttgaaccatatcaaagattgcgcgcgt
caaaaagagcagtgcgaatccggcgacacgggtttggaaatcagaaacataaatatagaa
ggttttgccaaggagggccatgaccaacgcgaaactatccaatgctttataaagattgaa
gagttcactgtgaggttcatgggcttctacagatctttaaaagcaaagaacatgaataga
ggaggtgttctataa

KEGG   Oryza sativa japonica (Japanese rice): 4350754
Entry
4350754           CDS       T01015                                 
Symbol
OsRFC1, RFC1
Name
(RefSeq) replication factor C subunit 1
  KO
K10754  replication factor C subunit 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4350754 (OsRFC1)
   03410 Base excision repair
    4350754 (OsRFC1)
   03420 Nucleotide excision repair
    4350754 (OsRFC1)
   03430 Mismatch repair
    4350754 (OsRFC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4350754 (OsRFC1)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4350754 (OsRFC1)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    4350754 (OsRFC1)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     4350754 (OsRFC1)
SSDB
Motif
Pfam: RFC1 BRCT AAA_lid_RFC1 AAA Rad17 AAA_22 AAA_30 RCF1-5-like_lid AAA_19 PTCB-BRCT RuvB_N AAA_5 nSTAND3 AAA_16 AAA_17 AAA_assoc_2 BRCT_2 AAA_18 AAA_24 Gp44_lid Zeta_toxin AAA_14 RNA_helicase RsgA_GTPase Sigma54_activ_2 NTPase_1 ABC_tran Mg_chelatase AAA_2 TsaE NPHP3_N AAA_33
Other DBs
NCBI-GeneID: 4350754
NCBI-ProteinID: NP_001391457
LinkDB
Position
11:join(23378455..23378457,23378580..23378714,23379286..23379903,23379973..23380040,23380189..23380264,23380341..23380402,23380482..23380633,23380919..23381082,23381159..23381347,23381447..23381568,23381650..23381857,23382268..23382321,23382487..23382656,23383295..23383385,23384040..23384221,23384306..23384345,23384435..23384559,23385402..23385474,23385852..23385944,23386512..23386758,23387335..23387394,23387491..23387624)
AA seq 1021 aa
MSSDIRKWFMKAQDKNGGAAKPAGTTALAKKPVLSIPEKPSAAPSMAACDQDCSARRKTS
KYFASKTEKEEDTSAGKGTGRGLPKRKLQKVSDELEDDMKPLPAKEVHKEEEDDDDDDFV
APSKRKTPVKPPPSKKLKGASTAEAHGKTGLDDDNEDKMDEDAKTPSKASGSGRGRGRGR
GRGGRGAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNF
GERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKT
NYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDKNSEKQQKSP
MKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVDRGSLQWTEKYRPKVPNDI
VGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIGKTTTAKVVS
QMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKAVLVM
DEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQM
GKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSS
TKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVGKDDS
GVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGE
RNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLK
TMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAYKQGS
SSRVVRAADLVNIPGMKKPLKKRVAAILEPVGESLPEENGVASSEGDEEDSSDAENNDEL
VPGDTKPKLDLQSDKKKGIQVQLDLKSNGNGLNSKKMPAGRSKASGSAGKAAGGSGGKRK
R
NT seq 3066 nt   +upstreamnt  +downstreamnt
atgtcttcggacatcaggaaatggttcatgaaggcgcaggacaagaatggtggcgcagcg
aagccggctgggacgacggcgttggcgaagaagcccgtgctcagcattccggagaagccg
tcggcggcgccatctatggcggcttgtgatcaagattgttcagctagaaggaagactagc
aagtactttgcatccaaaacagaaaaggaggaagacaccagtgcaggaaaaggtaccggg
agaggtttgcctaaaagaaaacttcagaaagtcagtgatgagcttgaggatgacatgaag
cctttgccagcaaaggaagtccataaagaagaagaagatgatgatgacgacgactttgtg
gcaccttcaaaaaggaaaactccggtgaagccaccaccatcaaagaagttgaagggtgca
tctactgctgaagctcatggaaagactggtcttgatgatgataacgaggacaagatggat
gaagacgctaagaccccttccaaggcatctggaagtggaaggggaaggggaagggggaga
gggaggggaggaagaggagcaggagcagcccatggaaagacaattggtcttgatgacgac
ggtgaggaggataagatggatgaagatgccaagaccccttccaaagcagctggaagggga
aggggaggagcctctgggggaagagggagaggagggggtgggagaggcttcatgaacttt
ggtgaaaggaaggatcctcctcacaaaggggagaaggaagtcccggagggtgcccctgac
tgtttaactggtttgacatttgtcataagtggcactcttgacagtcttgaacgtgaggag
gcaactgatctaatcaagcgttatggaggccgtgtgaccggctctattagcaaaaagacg
aattacctattggctgatgaagacgttggtggagtgaaatcaaataaagcgaaagaactg
ggcgtcccattcctaactgaagatggtttatttgatatgattcggaaatcaaagcctgca
aaggctactgtggcaaaacatcaaagcgacaaaaattcagaaaagcagcaaaaatcacca
atgaagagttctccagttaaagttgaaagaagagatggtaatcaaattaccacaggcaaa
aatatttcaccaaagagtaataaaggaagtgcctccattgacaaccaaaaggtcaacatt
gttgaccgtggttctttgcaatggactgaaaagtatcggcccaaagttccaaatgacata
gttgggaaccaatcaatggttaaacagcttcatgattggttgagaagttgggaggaccaa
ttccttcattctggccagaagggtaagggaaagaagcaggctgatagtggagctaaaaag
gctgtgttgttgagtggacctccaggtattggtaagaccacaactgctaaagttgtcagt
cagatgcttggattgcaggctattgaggttaatgcaagtgatagccgtggtaaggcagac
tctaagattgagaaaggtgttgggggcagtacatcaaattctatcaaagagcttattagt
aatgcaactctgaattatagtaacaaccgattaaaacgacccaaggctgtactagtcatg
gatgaagttgatggtatgtctgctggagatcgtggtggtgttgctgatcttattgctagc
attaagatgtccaagattcctataatttgcatttgcaatgaccgttatagccagaaattg
aagagccttgtaaattactgcttgctactcaacttcagaaaaccaaccaagcaacagatg
ggtaagaggttgatggaaattgccaagaaggaaggtcttcaagctcaagagaatgcaatg
gaagaacttgcagaaagagtacacggggatattcgcatggctcttaaccatttgcaatat
atgagcctctcccagtccgtggtcaaatatgatgatataagacagcgacttaatagtagc
acaaaagatgaagatatttcccccttcacggctgttgacaagctgtttggttttaatggt
gggagactacggatggatgagagaattgatttgagcatgagcgatcctgatttagtccct
ctgattatccaggaaaactatatcaattatcggcctatcactgttgggaaggatgacagt
ggagttaaaagaatgaattttcttgctcgtgctgctgaatctatagcggacgctgatatt
gttaatgtacaaataagaagatatcgacagtggcaattgtcccaagctgcttgtttgtct
tcatctatagttcctgctgctttgatgcatgggaatagagagatccttgaagcaggtgag
cgaaacttcaataggtttggtggatggttgggaaagtactcgaccacaaataaaaacata
aggctactggaagatgcccatagtcatattcttgcctcccagcaagcaaatttggacagg
gagtcattgaggctggattacctcactcttctcttgagacaattgactgatccactgaag
acaatgcccaaggatgaagctgtgcaaaaagtggtggagtttatggatacctactcttta
agccaggaagactttgacacaattgttgaattatcaaaatttaagggtcatccaaatcct
atggatggtattcaaccagctgttaaaagtgccttaacaaaagcatacaaacaaggaagt
agttctcgtgttgttcgagcagcagatctagtaaatatcccaggcatgaaaaagccatta
aagaaacgagtggcagcaatccttgagccagtgggagagagtttgcctgaagaaaatgga
gtagcgtcatctgaaggcgatgaagaggattcctctgatgctgaaaataatgatgaactg
gtgcctggtgacacaaaaccaaaactggacctgcagagtgataagaagaaagggatccaa
gtgcagctcgacctgaagagcaatggcaatggcttgaactcgaagaagatgccggctggt
agatcaaaagcttctggctctgctgggaaggctgctggaggctcaggtgggaagaggaag
aggtaa

KEGG   Oryza sativa japonica (Japanese rice): 4351654
Entry
4351654           CDS       T01015                                 
Symbol
OsJ_35406, OsRFC2, RFC2
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03030  DNA replication
osa03410  Base excision repair
osa03420  Nucleotide excision repair
osa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4351654 (OsJ_35406)
   03410 Base excision repair
    4351654 (OsJ_35406)
   03420 Nucleotide excision repair
    4351654 (OsJ_35406)
   03430 Mismatch repair
    4351654 (OsJ_35406)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4351654 (OsJ_35406)
   03036 Chromosome and associated proteins [BR:osa03036]
    4351654 (OsJ_35406)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4351654 (OsJ_35406)
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    4351654 (OsJ_35406)
  DNA Replication Termination Factors
   ELG1-RFC complex
    4351654 (OsJ_35406)
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    4351654 (OsJ_35406)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     4351654 (OsJ_35406)
  Check point factors
   HRAD17(Rad24)-RFC complex
    4351654 (OsJ_35406)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 Rad17 AAA_22 RuvB_N Mg_chelatase AAA_assoc_2 AAA_14 AAA_11 AAA_5 nSTAND_NTPase5 SLFN-g3_helicase ResIII AAA_24 AAA_16 nSTAND3 AAA_2 PhoH DNAX_ATPase_lid AAA_25 AAA_19 AAA_30 AAA_7 AAA_23 AAA_28 RNA_helicase Cdc6_lid bpMoxR Gp44_lid IstB_IS21 Parvo_NS1
Other DBs
NCBI-GeneID: 4351654
NCBI-ProteinID: NP_001410281
LinkDB
Position
12:join(3902563..3902606,3902731..3902809,3902903..3902982,3903956..3904075,3904158..3904227,3904306..3904379,3904461..3904581,3904668..3904730,3904816..3904875,3905224..3905349,3905426..3905509,3905980..3906078)
AA seq 339 aa
MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL
AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSN
RILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIP
EDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICK
KLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgccgctcgtgccgtcctcgcagccatgggtggagaaataccggccgaggcaggtg
aaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccaccaccctccagaccgcc
gaccttccgcacatgctgttctacggcccgcctggcaccgggaagaccaccaccgcgctt
gccattgcttaccagctctacggtccagagctctacaagtcaagagttctagaacttaat
gctagtgatgatcgtggaattaatgtggtgaggactaagatcaaggactttgctgctgtt
gctgttggttctgcacgaaaaggcggttatccctgcccaccatacaagattattatacta
gatgaagcagattcgatgacagaagatgcccagaatgctttaaggcgtactatggagact
tactccaaagtgacaagattctttttcatatgcaattacatcagcaggataatagaacca
cttgcatcaagatgtgcaaagtttagattcaagcctctttcagaagaagtaatgagcaat
cgcattttgcatatatgcaatgaagaagggctcagtcttgatgctcaggcattggctaca
ctaagcaccatctctaatggtgacctccgccgtgctataacctatcttcagagcgctgct
cgcttatttggatcttctatttcttctactgacttgattagtgtttcaggggctatccct
gaagacgttgtcaagtcattgcttgcatcttgcaaatctggtgaatttgatgtggcaaac
aaggaagtcaataatattattgcagatggataccccgtttcacagttgatctcacagttt
ctagatgtgatagttaatgccgatgatattccagatgagcagaaggcaagaatatgtaaa
aagcttggggaagcagataagtgcttggtcgatggagcggatgagtatttacagcttttg
gatgtggctagtgagactatccgtgctctttttgacatgccacaaacgctggtcttctaa

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