KEGG   Oryza sativa japonica (Japanese rice): 4330923
Entry
4330923           CDS       T01015                                 
Name
(RefSeq) ATP-dependent DNA helicase Q-like 3
  KO
K10901  bloom syndrome protein [EC:5.6.2.4]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4330923
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4330923
   03400 DNA repair and recombination proteins [BR:osa03400]
    4330923
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     4330923
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    4330923
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     4330923
    Bloom's syndrome complex (BTR)
     4330923
   FA (Fanconi anemia) pathway
     4330923
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII
Other DBs
NCBI-GeneID: 4330923
NCBI-ProteinID: XP_015622950
LinkDB
Position
2:complement(join(33580216..33580747,33584515..33584624,33584769..33584899,33584971..33585062,33585402..33585529,33585850..33585915,33586007..33586099,33586171..33586320,33586404..33586407,33586674..33586770,33586866..33587018,33587332..33587420,33587527..33587610,33587756..33587790,33587894..33588034,33588237..33588320,33588400..33588407,33588513..33588620,33588782..33588938))
AA seq 753 aa
MKRQLPIKGASGASGSGHGKKAPQELENVLKQHFGYSGFRGKQLEAIEAVLSGRDCFCLM
PTGGGKSMCYQIPALVKSGIVLVISPLIALMENQVASLKSKGIPAEFLSSTQTSHNKQKI
HEDLDSGNPSLKLLYVTPELVATSGFKAKLTKLYNRGLLGLVAIDEAHCISTWGHDFRPS
YRKLSSLRNQFPDIPILALTATAVPKVQKDVISSLCLRNPLILRASFNRPNIFYEVRYKD
LLDDVYSDISNLLKSSGNVCSIVYCLERAVCDDLTMHLSQQGISSAAYHAGLNSKVRSSV
LDDWLSSRTQVVVATVAFGMGIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVL
YYGLDDRKKMEFILRNTKNKKSELSSSSTELSEKALADFSQIIDYCENSTCRRKMIIESF
GEKVQPTLCQRSCDACKHPNLVSSRLEELRRVPTCRYNKISPVFKSSLANPKHMETEFWN
REDDASISVEDISDSDDGKEVVSNTAISKLPSKAGLDAKFEALERAENAYYQAKGQTKQQ
GGKLVDKKSISQTLRDASQKRLLNGLGQAKLRLGNLPFDEEPSAAHLEVECFKKYEKVGK
TFYNSQIAATVRWLSSSSLDQIQDRLHALADQITDHGAAASSPSIVPESPPASPDVICKI
PGEATSNEAKDIPLKNNTEEFVTTEHSDEIAKVAVLSENMELPKIPSFREFMSQKGRDRA
TSSSKVESLPSGVRRKVGIEKQGTTGPSKKMKS
NT seq 2262 nt   +upstreamnt  +downstreamnt
atgaagagacaacttcccataaaaggtgcatcgggggcctcgggatctgggcatggaaag
aaagctcctcaggagctggagaacgtcttgaagcaacatttcggatattcaggctttcga
ggaaagcaactagaggctatagaagctgttctttcaggaagggattgcttttgtttgatg
ccaactggaggtggaaaatcaatgtgctatcagattcctgctctagtgaagtcaggcatt
gttcttgttatctcacccttgatagcactaatggagaatcaggttgccagcttgaaaagc
aaaggtattccagctgagtttctctcgtcaacacaaacatcgcacaataaacaaaagata
catgaagaccttgattctggtaatccttctctaaaattgctatatgttactcctgagttg
gttgcaacatctgggttcaaggcaaagctaacaaagctctacaatagaggtctccttggt
cttgttgctattgatgaggctcattgcatttcaacttggggccatgatttcagacctagt
taccgcaagctttcatcactgaggaaccagttcccagacatacctatattagctttaact
gcaaccgcagttccaaaagtccagaaagatgtgatatcgtcactgtgcttgagaaatcca
ttaattcttagggcatcatttaatcggcctaatatattctatgaagttcgctacaaggat
ctccttgatgacgtttattctgacatatcaaatttactgaagtccagtggaaatgtttgc
tcaattgtgtactgtcttgaacgtgcggtttgtgatgatctaactatgcatttgtcacag
cagggtatctcctctgctgcttatcatgctggcctaaatagcaaggtgcggagttctgtt
cttgatgattggctttcctcgagaactcaagttgttgttgccactgttgcatttggaatg
ggtattgatagacaagatgtccgtattgtgtgtcactataacttgcctaagtccatggaa
gccttctaccaggagtcaggacgagctggccgtgaccaacagccttccaaaagtgttcta
tattatggattagatgaccgaaagaaaatggaatttattttgagaaacaccaagaacaaa
aagtcagagttatcgtcctcttcaactgaactttcagagaaggccttagccgactttagt
cagataattgattactgcgaaaattctacctgccgacgaaaaatgatcattgagagcttt
ggggagaaggtacaaccaactttatgccaacgctcatgtgatgcttgcaaacacccaaat
ctagtgtcctcacgtttggaggaacttcgtcgtgtgcccacctgtcgctataacaagata
tccccagtcttcaaaagctcgttggctaatccaaaacacatggagacagaattttggaat
cgtgaagatgatgcaagcatatcagttgaagatatatctgattccgatgatgggaaggag
gtggtgagcaatactgccatttcaaagctcccatcaaaagcagggctagatgcaaaattt
gaagcattggagcgtgctgaaaatgcttattatcaagctaaaggtcagaccaagcagcag
ggtgggaagcttgttgacaagaagagcatatctcagacactaagagatgcaagccaaaag
cgattgttgaatggccttggacaagcaaagttgcgacttgggaatctaccgtttgatgaa
gagccttctgcagcacaccttgaggtagagtgcttcaagaagtacgagaaagtgggcaag
acgttctacaactcgcagatagccgccacagttcggtggctttcgtcttcgagcctcgac
cagatacaggaccgcctccacgcccttgctgaccaaatcacagatcatggtgctgcggca
agctccccttccatcgtcccagagtctcctccagcatctcctgatgtaatctgtaaaatc
cctggagaagctactagcaacgaagctaaggacatacctctgaagaacaacacggaggag
tttgtaacgacggagcattctgacgagattgcaaaggtggcggttttatctgaaaatatg
gagctccccaagataccatcattcagagaattcatgagccaaaaaggaagggatcgtgca
acgagttcttccaaagtagagagcctgccttccggtgttcgtagaaaggttggcattgag
aagcaagggacgacgggaccatccaagaagatgaaatcatga

KEGG   Oryza sativa japonica (Japanese rice): 4335888
Entry
4335888           CDS       T01015                                 
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4A
  KO
K10901  bloom syndrome protein [EC:5.6.2.4]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4335888
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4335888
   03400 DNA repair and recombination proteins [BR:osa03400]
    4335888
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     4335888
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    4335888
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     4335888
    Bloom's syndrome complex (BTR)
     4335888
   FA (Fanconi anemia) pathway
     4335888
SSDB
Motif
Pfam: DEAD Helicase_C RQC HRDC RecQ_Zn_bind ResIII AAA_22
Other DBs
NCBI-GeneID: 4335888
NCBI-ProteinID: XP_015633861
LinkDB
Position
4:complement(join(21946350..21946734,21946831..21946908,21946987..21947078,21947178..21947274,21948089..21948144,21948274..21948435,21948635..21948715,21948810..21948968,21949048..21949164,21949252..21949320,21949407..21949477,21949552..21949675,21951326..21951461,21951538..21951689,21951763..21951883,21952176..21952303,21952377..21952463,21953062..21953193,21953273..21953645,21953928..21954052,21954154..21954309,21954439..21954852,21955288..21955345,21956027..21956178))
AA seq 1174 aa
MIKPRVNWSDHANAVQSSCIKDEFLSSSFLFSLPTQRPNQEADCTGMLPLRSAACRIQGL
ERLQAPSIEKAWRSLRNTQVARKNYLRPGLSGKVKDCDSDHAHTYGTSSSYNVNKMDSVS
RNRNPTQESMHQTTESGTMEKNSSHLPAGTKSCTRTYLNNHVVQADTITTTNQSLARTGP
ELFKTAPFIDNMCDDAKLDAMDEDELLASIDVDRIVMEHYQATNTPRGSSKSPLEKCNFN
GFDENNLPQELSIMCDHGSKLAFCPEAKSHLLEMKDNLLAISHELIDGQLSPQQSDDLHQ
KRALLKKQIELLGEYTARLTQDEERQQSHSMASTTAHQGHHPTSILSSSFVKDTNIFQSP
IYTRNEPGESGLCFSSAPYSYMDGLSMPLPSVQRDYTPRAIDISYTEGSGDKQWSSTHFA
WTKELEANNKRVFGNRSFRPNQREIINATMSGNDVFVLMPTGGGKSLTYQLPALICNGVT
LVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKI
AKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALT
ATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECG
IIYCLSRMDCEKVAAKLREYGHTASHYHGSMDPEDRANIQKQWSKDRINIICATVAFGMG
INKPDVRFVIHHSLPKSIEGYHQECGRAGRDSQLSTCVLFYNYSDYIRLKHMVTQGFAEQ
GTSAPRGGSSQEQALETHKENLLRMVSYCENDVDCRRLLQLIHFGEMFNPSCCAKTCDNC
LKELRWVEKDVTNIARQLVDLVMMTKQTYSTTHILEVYRGSVNQNVKKHRHDTLSLHGAG
KHLAKGEAARILRHLVIEEILIEDVKKSENYGSVSSVLKTNHKKSGDLLSGKHNVVLKFP
TPEKAPKMGVLDESSVPRINKTNQQSQVDGSLAAELYEALQCLRTQIMDENPQLLAYHIF
KNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVLATIEDFLARYPNATRKTSSGGS
NEHSEAVKKRRGFSVTNTSTNCDDFEERTVQSKKRAAKTRTRQEISDAASIVQDVRYIDL
ELDGCEQVNEVPYSVQKPVASGRVLPAWQSARIA
NT seq 3525 nt   +upstreamnt  +downstreamnt
atgataaagccaagggtcaactggtcggatcatgcaaatgctgttcaaagctcctgtatc
aaagatgaattcctgagttcaagttttttgttctctttaccaacacaaaggcctaatcag
gaagcagattgtacgggaatgcttcctttaaggtctgctgcttgcagaattcaaggccta
gagcgtcttcaagctccatccattgagaaggcctggcgttctctacgcaacactcaggtt
gcacggaagaattatttaagacctggtttatctggaaaagtgaaagattgtgatagcgac
catgctcatacttatgggacaagttcttcatataatgttaacaaaatggacagtgtgtcc
agaaataggaatcccacccaggaaagtatgcatcagacgactgaaagtggtactatggag
aagaacagtagccatctgcctgcaggcaccaagtcctgtacaaggacttacctgaacaat
catgtggtgcaggcagataccattacaacaacaaatcaaagtcttgcaagaactggtcct
gaattattcaagactgctccttttattgacaacatgtgtgatgatgctaaattagatgcc
atggatgaggatgagcttctagcgagtattgatgtggaccgaatagtcatggaacattat
caagcaacaaatacacccagagggtcatccaaatctccattagagaagtgcaacttcaat
ggatttgatgagaataatttaccacaagaactctctataatgtgtgaccacggtagcaag
ctagctttttgcccagaggcgaagtctcatttgcttgaaatgaaggataacttgcttgca
atatcccatgagcttattgacggtcaactcagccctcaacaatctgatgatcttcatcaa
aagagagcactcctaaagaagcagattgagctgcttggggagtatacggcgaggttaacc
caagatgaagagcgacagcaatctcattctatggcctccacaacagctcatcagggccat
caccccactagcatcctaagtagctcttttgtaaaggataccaatatattccaatcaccg
atttacaccaggaatgaacctggggaaagtggtttatgcttttcttctgctccatattcc
tatatggatggtttaagcatgccattaccgtctgttcagagagattacactccaagggct
attgatatcagttacactgaaggttctggtgataaacagtggagtagtacacactttgca
tggactaaggaactcgaggccaacaacaaaagagtatttggaaaccgttcttttcgccca
aatcaacgagaaataatcaacgccacaatgagtgggaatgatgtttttgttttgatgcca
actggtggtggaaaaagtttgacatatcagcttccagcactcatttgtaatggcgttaca
ttggtagtttctcctctcgtatcgctcatccaagaccagatcatgcatttattgcaggca
aatatttctgcagcttaccttagcgccagcatggagtggtcagaacagcaggagatatta
agagaattaatgtctcctacatgcacgtacaagttactgtatgttacgcctgaaaagata
gccaagagtgatgctctgttgagacaattggaaaatttatattcgcgaggccatctctct
agaattgtcattgatgaagcccactgtgttagccagtggggtcatgatttccgacctgat
taccagcatctaggcattttaaaacagaagttcccgcagacgccagtcctggccttgact
gcaacagcaactgcaagtgtcaaggaagatgtcgtgcaagttctaggccttgcaaactgc
attattttcagacaaagttttaatcgtccaaatctgaggtattttgtatggcccaagaca
aagaagtgcctcgaggatatccataactttatacatgcaaatcataataaagaatgcggc
atcatatattgcctttcgaggatggattgtgagaaagtggctgctaaattaagggaatat
gggcacacggcatcacattatcatggtagcatggatcctgaggatagagcaaatatccag
aaacagtggagcaaggataggatcaacataatatgtgctacagttgcatttgggatgggt
attaataaacctgatgtccgttttgttatccatcattccctgcccaaatcaattgaagga
tatcatcaggagtgtggacgtgctggtcgtgacagtcagctttcaacttgtgtcctgttc
tacaattattctgattatattcgtctcaaacacatggttacccaaggatttgcggagcaa
ggaacatcagcaccacgaggaggttcttcgcaggaacaagcgcttgaaacgcataaggaa
aatctcctgcgaatggttagttactgcgaaaatgatgtggactgcagacgtctactacag
ctgatccactttggagagatgtttaatccttcatgttgtgcaaaaacatgtgataattgc
ttgaaagagttgagatgggtcgaaaaagatgtgaccaacattgctagacaattggttgat
ctggtaatgatgacaaagcaaacatattcaactactcatattctcgaagtatacagaggt
tcagtaaaccaaaatgtcaagaagcaccgccatgatactttgagtcttcatggagctgga
aagcatctagctaaaggtgaagcagcgagaatattgcgccatctagtaattgaggaaata
ctcattgaggatgtcaaaaagagcgaaaactatggatctgtatcatctgtcttaaagact
aatcataagaaaagtggtgatcttctctctggcaagcacaacgttgtcctcaagttcccc
actcctgagaaggctcctaagatgggtgtactcgatgaatcgtcagttccacgaattaat
aagactaatcaacagagtcaagtggacgggagccttgcagccgagctttatgaagctttg
caatgccttaggactcagataatggatgaaaatccacaattattggcataccacatattt
aaaaacgagacattgaaggaaatcagcaaccgaatgccaagaacgaaagaggaacttgtg
gagataaatggcatcggcaagaacaagctgaacaagtacggggaccgtgtgcttgcaacc
atagaggatttcctcgccagatatccaaatgcgaccaggaaaaccagcagcggcggcagc
aacgagcacagcgaggcggtcaagaagcgaagaggcttctccgtcaccaacacctctacc
aactgtgacgactttgaggaacgcacggtccagtccaagaaacgcgctgcaaagacacgt
acaaggcaggaaatatctgatgctgccagcatcgtccaggacgtccgctacatagatctt
gagctagatggttgtgaacaagtcaatgaagtgccatacagtgtacaaaagcctgtggct
tctggtagggttttacctgcgtggcagtccgccagaatagcctag

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