KEGG   Oryza sativa japonica (Japanese rice): 4330931
Entry
4330931           CDS       T01015                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4330931
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4330931
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4330931
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     4330931
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 4330931
NCBI-ProteinID: XP_015627123
UniProt: Q0DX09 Q6K823
LinkDB
Position
2:complement(join(33656415..33656486,33656573..33656717,33657926..33657967,33658090..33658142,33658335..33658766,33658906..33658983,33659061..33659146,33660864..33660965,33661030..33661236,33662252..33662612,33662739..33662902,33662985..33663093,33663744..33663761))
AA seq 622 aa
MSGLLNSNLNNSASNLQDSTGRPFTGSFSGQSGSVPGGFHHSGLHNMHGSLNMPNMPGSF
SQRNAAMSGLPSSGVQQPGGSMPGRFASNNLPVGMSQIPHGHSGVGSRGLNVGGGPAFSS
SLNIGGTIQGLSSNLGAGGSRNSVPGMSVSPSLGNLGPRITGSVGNIVGGSNIGRNISSG
GLSVPSIASRMNLSGNVGSGGLNVQGSSRMMNGILQQGSPQMLNMMGSLYPTSGGSLSQN
QIQGGNNSLGSMGMLHDASDGAPFDMSDFPQLTGRPSSAGGPQGQYGSLRKQGVGVNTIV
QQNQEFSIQNEDFPALPGYKGNTTDYAMELHHKEQLHDNVPVMQAQQYPMSRSVGFNLGS
NYPPNRQQHQQGANSVQNAGPPNIGLRPLNSPNQTSSLGSYEQLIQQYQQPQAQNPFRLQ
QVSSATQSYRDQSLKSIQGGQTPSDPYGLMGLLGVIRMNDVDLSSLALGIDLTTLGLNLN
SPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKFQTPTLFYIFYSMPR
DEAQLCAASELYTRGWFYHKEVRVWLTRIPNVEPLVKTPHYERGSYGCFDPNNWETIRKD
NFVLHYDQIEKKPAIPSSQNVR
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgtcgggcctgctgaattcaaacctgaacaattctgcatcaaatcttcaagactcaact
ggaagaccgtttacagggtccttttctggtcaatctggatcagttccagggggtttccat
cactctggtttgcacaacatgcatggaagtttaaatatgccaaatatgcctggatcgttt
tctcagaggaatgctgccatgagtggccttccatcctctggggttcaacagcctggaggg
agcatgcctgggagatttgcttcaaacaaccttccagttggcatgtcccagatccctcat
ggtcattcaggagtcggtagtagaggattgaatgttggtggaggtccagcatttagtagt
agcctgaatattggtggtaccattcaaggcttatcctcaaacctgggtgctggtggtagt
cgtaattctgttcctgggatgtcagtatctccatctttgggaaatttgggtcctaggatc
actggttctgtaggaaatattgtgggtggaagtaacattggaaggaatataagctctggt
ggattatctgtgccaagcatagcatcacgcatgaatttgagtggcaatgttggcagtggc
ggtctgaatgtccaaggatccagcaggatgatgaatggcattcttcagcaaggatcacct
caaatgctgaacatgatggggagtttatatccaacatctggaggttctttatctcagaac
caaatacaaggaggaaataattcccttggttctatggggatgctgcatgatgccagtgac
ggtgctccatttgacatgagtgattttccccagctgactggtcgacctagttctgcgggt
ggtccacaaggacaatatggctccctacggaagcaaggagttggtgttaacaccattgtt
cagcaaaaccaggaattcagcattcaaaatgaagacttcccggctttacctggatacaaa
ggcaacactacagattatgctatggagttgcatcacaaggaacaacttcatgataatgta
cctgttatgcaagcgcaacaatatccgatgtcaagatcagttggctttaacttaggaagt
aactacccaccaaatcgtcagcaacaccagcaaggtgctaattcagttcagaatgctggt
cccccaaatatcggactaagaccactaaattctccaaatcaaacttctagtttgggatca
tatgagcaacttatccagcaataccagcaacctcaggctcaaaatcctttcagattgcag
caggtgtcttcagctacccagtcatatagggatcagagtctaaagtccatccaggggggc
caaacaccatctgatccatatggcttgatgggattgctaggagttatcaggatgaatgat
gttgacttatcatctcttgctttaggaatagatttgacaacattgggtttaaacttgaac
tcaccagacaatctgtacaagacatttggctctccatggtcaaacgagccagcaaaagga
gaacctgagtttcatactccagcttgctactccgctgagcaacctccaccactacaacct
atacattttcagaaattccagacgccaacactgttttacatcttctatagcatgccaagg
gatgaagctcagctatgtgctgctagtgagctgtatactcgaggatggttctaccataaa
gaagtgcgtgtgtggctcaccagaattccaaatgttgagcctctggtcaaaacacctcat
tatgaacgaggatcttatggttgctttgatccaaacaactgggagacaatccgcaaggac
aactttgttctccattatgatcaaatagagaagaagccagctatcccttcatcccaaaac
gttaggtga

KEGG   Oryza sativa japonica (Japanese rice): 4334027
Entry
4334027           CDS       T01015                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4334027
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4334027
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4334027
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     4334027
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 4334027
NCBI-ProteinID: XP_015630450
LinkDB
Position
3:complement(join(31040461,31040551..31040636,31040717..31040861,31049484..31049525,31049629..31049681,31049869..31050294,31050432..31050509,31050584..31050669,31052503..31052607,31052670..31052876,31053977..31054334,31054460..31054623,31054707..31054815,31055388..31055405))
AA seq 625 aa
MSGLLNSNLNNSASNLQDSSGRPFTASFSGQSGSVPGAFHHSGLHNIHANFNLPNMPGSL
AQRNAAMSGLPSSGVQQPGGSISARFASNNLPVGMSQLPHGHSGVSSRVNVGGGPAFSSS
LNIGGTIQGLSSNLGAGGNRNSVPGMSVSPALGNLGPRITGSVGNIVGGSNIGRNISSGG
LSVPSIASRMNLSGNIGSGGLNVQGSSRMMNGILQQGSPQMMNMMGSSYPTSGGSLSQNQ
IQGGNNSLGSMGMLHDANDSAPYDMNDFPQLTGRPSSAGGPQGQYAGSLRKQGVGVNTIV
QQNQEFSIQNEDFPALPGYKGSTSDYAMELHHKEQLHDNVPVMQAQQYPMSRSVGFNLGS
NYPPNRQQHQQGANSVQNAGPQNIGLRSSASQTSSLGSYEQLIQQYQQPQTQNPFRLQQV
SSATQSYRDQSLKSIQGGQTPPDPYGLMGLLGVIRMNDADLASLALGMDLTTLGLNLNSP
DNLYKTFGSPWSNEPAKGEPEFHIPACYNAEQPPPLQPIHFQKFQTLTLFYIFYSMPRDE
AQLCAASELYNRGWFYHKEVRVWLTRIPNVEPLVKTPHYERGSYGCFDPNNWETIRKDNF
VLHYDQIEKKPAIPSSSQTVRGNIS
NT seq 1878 nt   +upstreamnt  +downstreamnt
atgtcaggcctactgaattcaaacctgaacaattctgcatcaaaccttcaagactcatct
ggaagaccgtttacagcatccttttctggtcaatctggatcagttccaggggcgttccat
cactctggcttgcacaacatccatgcaaattttaatctgccaaatatgcctggatcgctt
gctcagaggaatgctgccatgagtggccttccatcctctggggttcaacagcctggaggg
agcatttctgcaagatttgcttcaaacaaccttccagttggaatgtctcagcttcctcat
gggcattcaggagtcagttctagagtgaatgttggcggaggtccagcatttagtagtagc
ttgaatattggaggtaccattcaaggcttatcctcaaacttgggtgctggtggtaatcgg
aattctgttcctgggatgtcagtatctccagctttgggaaatttgggccctaggatcact
ggttctgtaggaaatattgtgggtggaagtaacattggaaggaatataagctctggtgga
ttatctgtgccaagcatagcatcacgcatgaatttgagtggcaatattggcagtggcggt
ctaaatgtccaaggatccagcaggatgatgaatggcattcttcagcaaggatcgcctcaa
atgatgaacatgatggggagttcatatccgacgtctggaggttcattatctcagaaccaa
atacaaggaggaaataattcccttggttccatggggatgctgcatgatgccaatgacagt
gctccatatgacatgaatgattttccccaattgactggtcgacctagttctgctggtggt
ccgcaaggacaatatgcaggctcactgcggaagcaaggagttggtgttaacaccattgtt
caacaaaaccaggaatttagcattcaaaatgaagacttcccagctttacctggatacaaa
ggtagcacttcagattatgctatggagttgcatcacaaggaacaacttcatgataatgtg
cctgttatgcaagcacagcaatatccgatgtcaaggtcagttggctttaatttaggaagt
aactacccaccaaatcgtcagcaacaccagcaaggtgctaattcagttcagaatgctggt
ccccaaaatatcggattaagatcttctgcaagtcaaacttctagtttgggatcatacgag
caacttatccaacaataccagcagcctcaaactcaaaatcctttcagattgcagcaggtg
tcttcagctacacagtcatacagagatcaaagtctaaagtccatccagggagggcaaaca
ccacctgatccttatggtttgatgggattgctgggagttatcaggatgaatgatgctgac
ttagcatctcttgctttaggaatggatttgacaacattgggtttaaacttgaactcacca
gacaatctatacaagacatttggttctccatggtcaaatgagccagcaaaaggagaacct
gagtttcatattccagcttgctacaatgctgagcaacctccaccgctacaacctatacat
tttcagaagttccagacgttaacgctgttttacatcttctatagcatgccaagggatgaa
gctcagctatgtgctgctagtgagctttacaaccgaggatggttttatcataaagaagtg
cgagtgtggctcacaagaattccaaatgttgagcctctggtcaaaactcctcattatgaa
cgagggtcttacggttgctttgatccaaacaactgggagacaatccgcaaggacaatttt
gttcttcattatgaccaaatagagaagaagccagctatcccatcttcgtcccaaactgtt
aggggaaacatttcttga

KEGG   Oryza sativa japonica (Japanese rice): 4339144
Entry
4339144           CDS       T01015                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X2
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4339144
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4339144
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4339144
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     4339144
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 4339144
NCBI-ProteinID: XP_015638214
LinkDB
Position
5:join(24031015..24031149,24032990..24033095,24033229..24033350,24033433..24033496,24033587..24033778,24034306..24034515,24034593..24034691,24034830..24034897,24034988..24035062,24035267..24035812,24035921..24035973,24036044..24036085,24036195..24036339,24036422..24036532,24036650..24036661)
AA seq 659 aa
MRFCSIKGVEPLCLAAILGLFTSQPSHQSKRSRMGGRKSPSKSTQSSSSGARSNLPVSTG
KPLTPTFSGQSGSVSGFRHPGSLAPRGSSMTGSSSLGVQPPRGSISGAWFPPNSLQASIY
QVGYPALSNRGGMHVGGSPVFTAAPVCGNFGPRITYVASVAGGGNIGRTISSAGMSMPTV
ASPVNLSGSGALNIRGSNQMGGTHQQGLPAMNMLGSSSSAPGGTLSKNQLQAGSSSSGSP
GMRHDGNFGENSLFDINDFPQLVGRPNSAGNIQGLYGPLRQQAFGINAVQQNQEFRIHNE
DFPALPRLEGMELHRKDHLPKNANIMQAQHYPMGKSSGFNTGSSCPPRKQHKQTANSVQN
TGPENVGPKPVNSPRLPLNPRPREQVIQQNHEPQAQKSVRLQSSSGPESHKVQSPKSSQR
TDTTPESYKVQSPKPSQRTDTAPESHKVQSPKSSQRTDTAPDPYDPYGLHGLLRVMKLKE
EGPASLALGIDLTTLGLDMNSSDNLYKTFGSPWSSEPVKEEYSYEIPDCYSSMQPPPLQA
LHFLRFHLMTLFYIFYSMPQDAAQLYAANEICKYGWVYHKELRQWVKRAPNTTPLVKTTT
YEQGLCYLFDANIWDAIPKDNFILRYDDIEKIPALPPLLPATQNPATQNGSVRINKPLQ
NT seq 1980 nt   +upstreamnt  +downstreamnt
atgcggttttgttccataaaaggggttgaacccctatgcctagccgcaattcttggtctt
ttcacctctcaaccttctcaccaaagtaaacgctcaaggatgggcggccgcaaatctcca
tcaaagtcgacacagtcaagcagtagtggtgccagatcaaaccttccagtctcaacagga
aagccgttgacaccgaccttttctggtcaatctggatcagtttcaggttttcgtcatcct
ggttcactagcaccaaggggttcctcaatgactggtagttcatcccttggggttcaacca
cctaggggtagtatttctggtgcttggtttcctccaaatagtcttcaagcatccatttat
caggtcgggtatcctgctctcagcaaccgaggaggtatgcatgttgggggaagtcctgtt
tttactgctgctccagtttgtgggaattttggcccgcgaataacttatgtggctagcgtt
gcgggtgggggcaacattgggagaaccataagctctgccggaatgtctatgcctactgtt
gcatcccctgtgaatttgtctggaagtggggctcttaatatccgaggatcaaaccaaatg
ggtggtactcatcaacaaggattgccggctatgaatatgcttggaagctctagttcagca
cctggaggaacactatctaagaaccaattgcaggcaggaagcagttcgtctggttctcca
ggaatgcgacatgatggtaactttggtgaaaattctctatttgacatcaatgattttcct
caattagttgggcgacctaattctgctggaaatattcaggggttatatggacctctaaga
caacaagcatttggtattaatgctgttcagcaaaaccaggaatttagaatccataatgag
gacttcccagctttaccaagattggaaggtatggagttgcatcgcaaggatcatcttcct
aagaatgcaaatattatgcaagcacaacattatcctatgggcaaatcatctggctttaac
acgggcagcagttgtccaccccgtaaacaacataagcagacagctaattcggttcaaaat
actgggcctgaaaatgttggaccaaagccagtaaattctccaaggttgcctttaaatccg
aggcctcgtgaacaagttatccagcaaaatcatgaaccacaggctcagaagtcagttagg
ctgcagtcatcttccggcccagagtctcacaaggttcagagtcccaagtcttctcagaga
actgataccacaccagagtcttacaaggttcagagtcccaagccttctcagagaaccgat
accgcaccagagtctcacaaggttcagagtcccaagtcttctcagagaactgataccgca
ccggatccatatgatccatatggcttacatggactactgagggtaatgaagttgaaagag
gagggaccggcatctcttgctttagggattgatttgacaacactagggttggatatgaac
tcttcagataatctttacaagacatttggctctccttggtcaagtgagccagttaaagaa
gagtattcttatgaaattccggattgctactcttctatgcagcctccacccctgcaagcg
ttgcattttctgaggtttcacctcatgacactattctacatcttctacagtatgccacag
gatgcagctcagttatatgccgcgaatgaaatatgcaaatacgggtgggtttaccacaaa
gagctgcgtcagtgggttaaaagagctcctaatacgacccctctcgtcaaaactacaact
tatgaacaaggactctgctatctttttgatgccaacatttgggatgcaattcctaaggac
aactttattctccgttatgacgatatcgagaagatacctgcccttcctccccttcttcct
gccacccaaaatcctgccacccaaaatggtagtgtaagaataaacaagccattgcagtag

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