KEGG   Oryza sativa japonica (Japanese rice): 4331296
Entry
4331296           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4331296
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4331296
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4331296
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     4331296
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT
Other DBs
NCBI-GeneID: 4331296
NCBI-ProteinID: XP_015632082
LinkDB
Position
3:join(159898..159993,160500..160800,160882..161098,161197..161530,161640..161753,161822..161950,162050..162226,162312..162503,163601..163738,163869..163991,164084..164316,164657..164760,165390..165484,165574..165810,167009..167111,167243..167340,167438..167583,167666..167774,167864..168010,168710..168757,168833..168961,169049..169264,169346..169495,169674..169759,169845..169950,170035..170130,170516..170668,171404..171583,171680..171900,171991..172087,172586..172732,172813..172950,173305..173352,173447..173593,173664..173725,174963..175116,175211..175402,176111..176218,176305..176436,176522..176731,176827..176928,177018..177155)
AA seq 2050 aa
MISEISATEVRLLLLQAAADSNLDSVRRRLCQLVDSGLDGCILLLQVCLDQVLLKPHQLD
KSKHDLLSAVFRYCMDKTYFTTCFCEALGPMPATHGDGFLKTLSNVLELSPAERVGIGLA
LSDSEDSGLKLKGQQFSIAQIEGLCLNLLQSPSNDQIHDIVIFLHQTDGLSKHMDTFNTI
ISLFKTKETPFFAPTPFNKCDIQSRHLDMCFGSMDYDSELLLSEIEKEITMADIVTELGY
GCTVDTTHCKEILSIFEPLDDVAVSKLVGAVIGTHNVLVEAHNTYAMFVSAISNMNDSPQ
LTTWNTDVLVDSINELAPSTNWVHVMENLDHEGFNVPDEAAFCLLMSIYAHPCKEPFPLH
AVCGSLWTNTEGQISFLKHAVSVPTDTFTFSHCSRKLAFPDLACPIQDNHAWFCLDLMVV
LCQLAEVGHTVSVQSMLEYPLQHCPELLIVGLGHVNTAYNLLQYEVQSRVFPAILKDATK
SNVVNYLWQINPSLTLRGFVDAHSDPDCLLRIVDVCRDLKILSAVLDSTPYAFSIKLAVA
ASRIDHSHLEKWLIAKLRVCKDDFLQDCVSFLKETMSNASCALEGTIQESQAVVMNIYRE
YCPHFIKILQYQSGHLLSNQKLDELRKSYISYELRNHDSVVRGIPTSDNVEIEADAYFHQ
MFSGQISIAAIVQMLSRFKNSPEKREQLIFKCMISNMFEEYKFLPKYPDKQLKLSALLFG
SLIKHRLVTHLELGIALHAVLDALHKSVDSKMFMFGTTALEQFMDRLIEWPDYCNHILQI
SHLCGAHTEMVSAIERALARISSSQNELSVNISVSSEQHVTGLAPIEPIEASDQPSSLPS
PHQLSSVPSTMHATVFSHPQSSCSGLPRQPSNSTGFGTPLNIGTLVAAAEQRYTSIESPP
SEVQDKIMFMINNISISNMEAKAKECIEVLPECYYPWFAQSMVMKRASIEPKFHDLYLKF
FVKVNSRFLNKEVLKATYENCKILLRSDLIKSSSEERSLLKNLGSWLGKFTIGRNQALLA
KEIDPKVLIVEAYEKGLMIAVIPFTSKILEPCRSSIAYRPPNPWTMGILSLLAEIYNLPN
LKMNLKFEIEVLFKNLDVDLKDVNPTSLLKDRVCEVEGNPDFSNKDVAASQTQISSGISR
STNHVELQSVISSTSHAVSLPNYATPHLPSNSMVEDDNVAFMMPKHVSSHTLTQVSPSET
ALASQSPFSLTQLVKLIPHDEIRCKISSKLGSLGRQLQYSKIMDTALDKAIKEILCPVVE
KSVGTAIQNTKKLILKDYALESDNNTIKSSVHSIARTIAGNLAYANCKEPLCVALTDHLQ
SQIQTLTSNNKTIKQLIDVLINDNLDLGCRIIKSVAMCKAIEMIDEEITESFPLQKKQRE
AAGSAYCDAFTHAQGRFAHEPEALHPKHEHLSVAQQVYEDYVHVWQSHSQHVDASCFGQS
GKATCSSNFIVPRAYSPNSASATSSDCTAAQTAPFIYKLTELLSEELIAEPSSVCPAQVG
LCDSSALHGGPSGVTSTFPPENNFHVMRLFNDWCHTCDHPSSADVAYGRFVMHLQQIGVL
MGDDITERFFHIFTELAVKHSLVPNQIVATGGVSQKSSQQLKISYFPIDSFSKLVAMVLK
YSSAETGPNKCSLLPKILLVAVRIIQRDSEEKKASFNPRPYFRLFISLLYDLISSDLHSD
GANFQVLIAFANAFHALQPLRIPSWSFAWLELVSHRTFMPSLLMCDSRKGWPFFQRLILD
LFKFMEPYLRNVELGEPMCLMYKGTMRVLLILLHDFPEFLCNYHFSFCDMIPSSCIQMRN
VILDAHPQDMRVVDPASPNLKQIDLLPEISMAPQIMSDVEGALKSKLMKTEVDEYFKKSE
GSLFLSDLKQKLLLPQNETSVAGTRYNVPLINSLVLYVGIQGLQQQQTESSASGPAIHTA
HMDIFRTLMADLDTEGRYLVLNAIANQLRYPNIHTHCFYFIILHLFSEATQEIIQDQIMR
VILERLVVRRPHPWGLQMTLVELIKNPRYKLWSRPFIRCGPQIDKVLIEFVDMLDDPRLT
SLYSSFRSIN
NT seq 6153 nt   +upstreamnt  +downstreamnt
atgatctccgaaatctccgcgacggaggtgcgcctcctcctgctccaagccgccgccgat
tctaacctcgattccgttcgccgccgcctctgccagttagtcgactccggtctggatgga
tgcattttgcttctccaagtttgtttggatcaagtgctcctcaaacctcaccagctggac
aaatctaaacatgatcttttatctgccgttttcagatactgtatggataaaacatacttc
accacctgtttttgtgaggctcttggaccgatgcctgccacccatggcgatggcttcctc
aaaaccttatcaaatgtcctggaactctcaccagctgagagagttggcattggacttgcc
ctgtcagattctgaggattcaggcctcaagctcaaagggcaacagttttcaattgctcaa
attgaggggttgtgtttaaatcttcttcaatcgccatcaaatgaccaaattcacgacatt
gtcatctttcttcaccagactgatgggctgtcaaagcatatggatacttttaataccatt
atatctctattcaaaaccaaagagacaccgttttttgctcctaccccatttaacaagtgc
gatattcagtcaaggcatctggacatgtgctttggcagcatggattacgattctgagttg
cttctgtctgaaattgagaaagaaattaccatggcagacatcgtaactgagttgggttat
ggatgcacagttgataccactcattgtaaggaaattctttccatattcgagcctcttgat
gatgtagcagtatcaaagttggttggggcagttattggcactcataatgtccttgtggag
gcccacaatacatatgctatgtttgtatcggctattagcaacatgaatgattcacctcaa
ttgactacatggaacactgacgttcttgtggattcgatcaatgaacttgcccctagcact
aactgggtgcatgtaatggaaaatcttgatcatgagggtttcaatgttcctgatgaagca
gccttttgtttgctgatgtctatatatgcccatccttgcaaggagccttttccacttcat
gctgtttgtgggtcattgtggacgaatacagagggtcaaatttcattcttaaagcatgca
gtttccgttcctactgatacatttacattttcgcattgttcgaggaagctggcatttccg
gacttggcctgtcctattcaagacaatcatgcttggttctgccttgaccttatggtggtt
ttatgccaacttgctgaagttggacacaccgtgtcagtacaatcaatgctggagtatcct
ctacaacattgtcctgaactcttaattgttggtcttggacacgttaatactgcgtataat
ctcctccaatatgaagtgcagtctcgtgtatttcctgccatactgaaggatgctacaaaa
agcaatgtggtgaactatctctggcagattaacccatccctcactcttcgaggatttgtt
gatgctcattctgatccagattgtcttctgaggattgttgatgtgtgtcgagacctgaag
atcctatctgctgtgcttgattctaccccttatgcattcagcattaaactggctgttgct
gcctctaggatagaccatagccatcttgagaaatggttgattgcaaagttacgtgtctgc
aaagacgattttcttcaggattgtgttagtttcttgaaagaaactatgagcaatgcatct
tgtgctctagaaggtacaattcaagaatctcaagctgttgttatgaatatatatcgggag
tattgtcctcactttataaagattcttcagtatcagtcagggcatctcttgtccaatcaa
aaattggatgaactaagaaaatcatatatttcttatgagttgagaaatcatgattctgtt
gtaagggggatccctacttcagataatgttgaaatagaggcagatgcttattttcaccag
atgttttctggacagataagcattgctgcaattgtacagatgctatctcgcttcaaaaat
tctccagaaaaaagggagcaattgatttttaagtgtatgatatcaaatatgtttgaagaa
tacaagttcctcccgaagtatcctgataagcagcttaaactgtcagctcttttgtttgga
tctcttattaagcatcgacttgtgacccaccttgagctcggaattgctctacatgctgtt
cttgatgccttgcacaaatctgttgattcaaagatgtttatgtttggcacaacagcattg
gaacagtttatggaccgtcttatagagtggccagactactgcaatcatatattgcagatt
tcccatctttgtggggcacacactgaaatggtctcagcaattgagagagcccttgctagg
atctcatcgagccagaatgagctcagcgttaacatctcagtctcttctgagcagcatgtc
actggtttggcaccgattgaaccaatagaggcttctgatcaaccatcttcattaccttcc
cctcatcaattgtccagtgtgccatctactatgcatgctactgttttttcacatcctcaa
agttcctgctcagggttgcctcgacagccttccaattctacaggatttggaactccttta
aatattgggacacttgtagcagcagcagagcaaagatacacatccattgagtctcctcca
tctgaagttcaggacaagatcatgtttatgattaataatatatcaatctcaaatatggag
gctaaggcaaaagaatgtattgaggtactcccagaatgttattatccttggtttgcacaa
tccatggtcatgaaaagggcaagcattgaaccaaaatttcatgacttgtatttgaagttc
tttgtcaaagtgaactcaagattcttaaacaaagaagtactgaaggctacatatgagaac
tgcaagatattgttaagatcggatcttatcaaatctagttctgaggaacgctccttgcta
aaaaatctgggaagctggctaggaaaattcaccatcgggaggaaccaggcattactagct
aaggaaattgacccaaaagttcttattgtagaggcatatgagaaaggactgatgatagca
gtcattccattcacttcaaagattcttgaaccttgccggtcaagtatagcataccgtcct
ccaaatccctggacaatggggattcttagtctgcttgctgagatctataatctaccaaac
ctcaagatgaatctaaaatttgagattgaggttctgtttaagaaccttgatgtggatctg
aaagatgtaaacccaacttccctccttaaggatagagtatgtgaagttgagggaaatcca
gatttttcaaacaaagatgttgctgcatctcaaacccaaatctcttcgggcatcagtcgc
tcaacaaaccatgtggaactgcagtcagttatcagtagcacttcccatgctgtgagcctt
ccaaattatgcaactcctcatcttccttcaaatagcatggtagaagatgacaatgttgct
ttcatgatgcctaagcatgtttcctcgcatactttgacccaggtttcaccatcagaaaca
gcattggcatcacaatctccattttctcttactcagcttgtgaaattgataccacatgat
gagatacgctgcaaaataagttcgaaacttggctctcttggtcgacaattgcaatacagc
aaaatcatggacacagctttggacaaggctattaaagagatattgtgccctgttgttgaa
aaaagtgtgggcacagcaatccaaaatacaaaaaaacttattctgaaggattatgcactg
gagtcagataacaataccataaaatcttctgtacattcaatagccaggacaatagctgga
aatctagcctatgctaattgcaaggaacctctttgtgttgcactaacagatcatcttcaa
agtcagattcagacgctcactagtaacaacaaaactatcaagcaactaatcgatgttcta
atcaatgataacctggatcttggctgcagaattattaagtctgttgcaatgtgcaaggct
attgaaatgattgacgaagaaataacagagtcttttccactacaaaagaaacaaagggag
gcagctggctctgcatactgtgatgcttttacccatgctcagggtcgatttgcacatgaa
cctgaagcactgcatcctaaacatgagcatctatctgttgcccaacaagtgtacgaggac
tatgttcatgtatggcagagccatagccaacatgttgacgcttcatgttttggtcagtct
ggtaaagctacttgctcaagcaattttattgtacctcgagcatacagtccaaattcagca
tcagcgacctccagtgattgtactgctgctcaaactgcgccatttatatataaattgaca
gaactgttgtctgaggaattgatcgcagaaccttcgagtgtttgtcctgctcaagttggt
ctctgtgactcttctgctctacatggtggacccagtggtgttacatcaacttttcctcca
gagaacaattttcatgttatgcgcctatttaatgactggtgccatacatgtgatcatcca
agttctgctgatgtggcatatggccgttttgttatgcatctgcaacagattggcgtgttg
atgggagatgatattactgagcgcttcttccatattttcaccgaacttgctgttaaacac
tctctagtccccaatcagattgttgctactggtggagtgtctcagaagtcatcacaacaa
ctcaaaatttcatatttcccaattgattctttttcgaagcttgtagctatggtgctcaag
tactcatctgctgaaacaggaccaaataaatgcagccttcttcccaagattttgttagtg
gcagttaggatcattcagagagattctgaagagaagaaagcatcattcaatccccggcca
tactttcggctttttataagtttgctatatgatcttatttcttctgacctccatagtgat
ggtgctaatttccaggttttgattgcatttgcaaatgcattccatgcactgcaacccttg
agaattccttcctggagctttgcttggcttgagttggtgagtcacagaactttcatgcca
agtctgttgatgtgcgattcgagaaaagggtggcctttctttcagcgtctaattcttgat
ctgttcaaattcatggagccatatttgagaaatgttgaacttggagaaccaatgtgtctt
atgtacaaaggaactatgagggtgctacttatactactgcatgactttcctgaatttctg
tgcaattaccacttcagtttctgtgacatgattccttccagttgcattcaaatgcgcaat
gtcattcttgatgctcatccacaagacatgagagtggtagatccagctagtcctaatttg
aagcagattgatctgttaccggaaatttcaatggctccacaaatcatgtcggatgttgag
ggtgctctgaaatcaaagctgatgaagactgaggttgatgagtacttcaagaaatcagaa
ggctctttgtttcttagtgatctgaagcaaaagttattgctgccacaaaatgaaactagt
gttgccgggacacgctacaatgttcctctcattaattcgcttgttctctatgtcggtatc
caaggtttgcaacagcaacaaacggagtctagtgcatctggtccagcaatccatactgcc
cacatggatattttcagaactcttatggcagacttggacacagagggccggtaccttgtt
ttgaatgcaatagctaaccagctgcgttaccctaatatccatacacactgcttctacttc
atcatcctgcatctgttttcagaagctacccaggaaattatccaggatcagataatgagg
gttatcttggaacgtctagtagtgagacgtcctcatccttggggcttacaaatgactttg
gttgaactgattaagaatccacgttacaagctgtggagccgaccttttatacgctgtgga
ccacagattgacaaggtgctgatcgagtttgttgatatgttggatgacccgagattgacc
tctttatactcgtcttttcgctcaattaattga

DBGET integrated database retrieval system