Oryza sativa japonica (Japanese rice): 4331801
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Entry
4331801 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K03137
transcription initiation factor TFIIE subunit beta
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4331801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4331801
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
4331801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFA2_Winged_2
TFIIE_beta
Motif
Other DBs
NCBI-GeneID:
4331801
NCBI-ProteinID:
XP_015630069
UniProt:
A0A8J8XUH9
B9FBM0
LinkDB
All DBs
Position
3:join(4059702..4059965,4060058..4060189,4060279..4060395,4060898..4061251)
Genome browser
AA seq
288 aa
AA seq
DB search
MALHERLNKFRQQQERCQTTLSSIAANQASTPRSNITRWVQPTNGPSTPAKPPQRKFSDD
TERLQRINSVRKSPAAAQIKIVIELLEKTRQALTADQINEATYVHIHGNKEVFDRLKNNP
KVHFVGNLFSYKSKYGVNGKDKLLSLIRKFPDGLAVAEIKDAYLAVLEDLKALKASGVVC
LVASTTKSDEGVVYPEIDPMSKIKFDDDLKELARSILLPRDMLDIEKELQKNGQPTRTNA
AKRRADAQILLYPPKPNKSKKKPRGLTSRTKLTNAHLPGLFLGFRFFF
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggctcttcatgagcggctgaacaaatttagacagcagcaggagaggtgccagacaact
ctatccagtattgctgcaaaccaagcttcaactccaagatcaaatatcactcgatgggtt
caaccaacaaatggtccatccactccagcaaaaccaccacagcgtaaattctcagatgat
acagagaggttgcagcgcatcaattcagttaggaagtctcctgctgcagcacagatcaaa
atagtaattgaattgcttgaaaagacaagacaggctttaactgcagatcaaataaatgaa
gcaacttatgttcatattcatggcaacaaggaggtctttgacaggttgaagaataatccg
aaagtacactttgtcggcaaccttttctcttacaagtccaagtatggtgtgaacggaaaa
gataaactattatcgttgattagaaagtttcctgacggtcttgctgtcgcggagatcaag
gatgcttatctagctgtattggaagatcttaaggctctcaaagcctcaggcgtcgtctgc
ttggtggcgtccaccacaaaatccgacgaaggcgtcgtgtaccccgaaattgatccaatg
tcgaaaatcaagttcgacgatgacttgaaggagctggcccgttcgatattgctgccacgg
gacatgctggacattgagaaggagctccagaagaatggccaaccaacaaggactaacgca
gccaagaggcgagcagatgcccagatccttttatatccaccaaagcccaacaagtccaag
aaaaagccgcgtgggctcacgagcaggacgaagctcactaacgcacatctgcctggactt
tttttgggttttagattttttttttaa
Oryza sativa japonica (Japanese rice): 4348554
Help
Entry
4348554 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K03137
transcription initiation factor TFIIE subunit beta
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4348554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4348554
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
4348554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFA2_Winged_2
TFIIE_beta
Motif
Other DBs
NCBI-GeneID:
4348554
NCBI-ProteinID:
XP_015614656
UniProt:
A3C4G9
Q8RU47
LinkDB
All DBs
Position
10:complement(join(14006857..14007195,14008060..14008176,14008596..14008727,14009515..14009766))
Genome browser
AA seq
279 aa
AA seq
DB search
MDLKDSLSKFKQQQERCQSSLASIAASTSKPKHRAQPVNAPSAPARPLQPIKFSNDTERL
QHINSVRKSPIGAQIKLVIELLYKTRQAFTAEQINETTYVDIHGNKSVFDSLRNNPKVHY
DGRRFSYKSKHDLKGKDQLLVLVRKYPEGLAVVEVKDAYPTVMEDLQALKAAGEVWLLSN
MDSQEDIVYPNDPKAKIKVDDDLKQLFREMELPRDMVDIEKELQKNGIKPMTNTAKRRAA
AQINGVQPKAKPKKKQREITRRTKLTNAHLPELFQNLNT
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atggatctcaaggatagcctctccaaatttaagcagcagcaagagaggtgccaatcatct
ttggccagcatagctgcatcgacctcaaaaccaaagcacagggcccaaccggttaatgct
ccatccgctccagcaaggccactacaacctattaagttttcaaatgatacagaaaggcta
caacacatcaattcagttaggaaatctcctattggagcacagatcaaacttgtcattgaa
ttgctgtacaagacaagacaagcttttactgcggagcaaataaatgaaacaacttatgtt
gatatccatgggaataagtctgtctttgacagtctgaggaacaatcctaaagtacattat
gatgggagacgtttctcttacaagtccaagcatgatttgaagggaaaagatcaactactt
gttttggtaagaaagtatccggagggtcttgctgtggtggaagtcaaggatgcgtaccca
actgtaatggaagatttgcaggcactgaaggcagcaggtgaagtttggctgttatcgaac
atggattcccaggaggacattgtgtatcctaacgacccaaaggcaaagatcaaggtcgac
gatgacctgaagcagctcttccgggagatggagttaccgcgggacatggtggatatcgag
aaggagctccagaagaatggcatcaagcccatgaccaacacagctaaacggcgggctgca
gcacagatcaatggggtgcagcccaaggctaagcctaagaagaagcagcgtgagatcaca
cgccggaccaagctcacgaacgcccatctgcctgagctgttccagaacctcaacacttga
DBGET
integrated database retrieval system
