Oryza sativa japonica (Japanese rice) (RefSeq): 4332052
Help
Entry
4332052 CDS
T01015
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03030
DNA replication
osa03420
Nucleotide excision repair
osa03430
Mismatch repair
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4332052
03420 Nucleotide excision repair
4332052
03430 Mismatch repair
4332052
03440 Homologous recombination
4332052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4332052
03032 DNA replication proteins [BR:
osa03032
]
4332052
03400 DNA repair and recombination proteins [BR:
osa03400
]
4332052
Transcription factors [BR:
osa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
4332052
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
4332052
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
4332052
MMR (mismatch excision repair)
4332052
DSBR (double strand breaks repair)
HR (homologous recombination)
4332052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
BRCA-2_OB3
Motif
Other DBs
NCBI-GeneID:
4332052
NCBI-ProteinID:
XP_015628911
UniProt:
Q10Q08
LinkDB
All DBs
Position
3:5979571..5983095
Genome browser
AA seq
630 aa
AA seq
DB search
MDSDAAPSVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPIGTRFTFLASDGKDKIK
TMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEA
EKQEEKPAILLSPKEESVVLSKPTNAPPLPPVVLKPKQEVKSASQIVNEQRGNAAPAARL
AMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATM
FNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGETFIPQ
IQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTV
TISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQ
LRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNA
YISLIKPDQTMWYRACKTCNKKVTEAIGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEA
WLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKR
QRITVRSEAPVDHAAEAKYMLEEIAKLTGC
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggattccgacgcggcaccgtcagtgacgccgggggcggtggcgttcgtcctggagaac
gcgtcgccggacgcggccaccggcgtgccggtgccggagatcgtcctccaggtcgtcgac
ctcaagcccatcggcacccgcttcactttcttggcgagcgatggcaaggacaagataaag
acgatgcttctcacccagctcgctccggaggtgcgctccggcaacatccagaatctcggc
gtcatccgcgtcctcgactacacctgcaacaccatcggcgaaaagcaggaaaaggtcttg
attatcacgaagctcgaggtcgtgttcaaggcgctggattccgagatcaagtgcgaggcc
gaaaagcaagaggagaagccggcgattctgttgagtcccaaggaggaatccgtggttctc
tccaagcccacgaacgcgccgccacttcctccggttgtgctgaagcccaagcaggaggtg
aagtccgcgtcccagatcgtgaacgagcagcgcggcaatgctgctcctgcggcgcggttg
gccatgacgagaagagttcatcctttgatctccctgaacccctaccagggcaactggatc
atcaaggtgcgtgtcacaagcaagggcaacctgaggacgtacaagaatgctcgtggtgaa
ggctgcgtcttcaatgtggagctcactgatgtggatggcacccagatccaggcaaccatg
ttcaacgaggctgccaagaagttctatccgatgtttgagctggggaaggtgtactacatc
tccaaaggatctctcagagtcgccaacaagcagttcaagactgtccataatgactacgag
atgaccctgaatgagaatgctgttgttgaggaagctgagggcgaaacttttatcccacag
attcagtacaactttgtcaagattgatcagctagggccatatgttggtggcagggagcta
gtagatgttattggggttgttcagagcgtatctcctactcttagtgttaggaggaagatt
gacaacgagacgattccaaagcgtgacatcgttgtagcggatgactcgagcaaaactgta
accatatctctttggaatgatcttgccacaactactggtcaggagctcttggacatggta
gactctgcgcctatcattgcgataaagagcctaaaagtatctgacttccaaggtttgtct
ctgtcaactgtggggagaagtacaattgtagtgaatcctgacttgcctgaggcagaacag
ctcagagcttggtatgactctgaaggcaagggtacttcaatggcatcaattggttcagat
atgggcgcatcaagggttggtggcgcgagatccatgtacagtgatagagtttttctgtct
cacatcacaagtgaccccaacttgggtcaggataagcctgtgttcttcagtctgaatgcc
tatattagccttatcaagcctgaccaaaccatgtggtaccgagcttgcaagacctgcaac
aagaaggtgactgaggcaattggatcaggatactggtgtgaagggtgccagaagaatgat
gctgagtgctcactgaggtacatcatggtcatcaaggtctccgaccctactggtgaggcc
tggctttctctgttcaatgatcaggcagagaggattgttggctgcagtgcagatgagctt
gatcggattaggaaggaggagggtgatgacagttaccttctcaagctgaaggaagctact
tgggttcctcacctgttccgcgtcagcgtaactcagaatgagtacatgaatgagaagagg
cagaggatcactgtgaggagtgaagctccggtagaccacgcagctgaagccaagtacatg
ctcgaggagatagccaagctgacaggttgctag
DBGET
integrated database retrieval system
