KEGG   Oryza sativa japonica (Japanese rice): 4332082
Entry
4332082           CDS       T01015                                 
Name
(RefSeq) superoxide dismutase [Cu-Zn] 2 isoform X1
  KO
K04565  superoxide dismutase, Cu-Zn family [EC:1.15.1.1]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04146  Peroxisome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    4332082
Enzymes [BR:osa01000]
 1. Oxidoreductases
  1.15  Acting on superoxide as acceptor
   1.15.1  Acting on superoxide as acceptor (only sub-subclass identified to date)
    1.15.1.1  superoxide dismutase
     4332082
SSDB
Motif
Pfam: Sod_Cu
Other DBs
NCBI-GeneID: 4332082
NCBI-ProteinID: XP_015631402
UniProt: Q10PW4
LinkDB
Position
3:complement(join(6319754..6319782,6319964..6320017,6321101..6321176,6321269..6321300,6321414..6321509,6322491..6322592,6322721..6322826))
AA seq 164 aa
MAGKAGGLKGVALIGGAGGNSAVAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFG
DTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHS
ILGRAVVVHADSDDLGRGGHELSKTTGNAGARIGCGIIGLRSAV
NT seq 495 nt   +upstreamnt  +downstreamnt
atggcagggaaagccggcggcctcaagggcgtcgccctcatcggcggcgccggcggcaac
agcgcggtcgccggcgccctccacttcttccaggacccctccaccgggtataccgaggtg
agggggagggtcaccggcctcgctccgggcctccatggcttccacatccactcctttggc
gacaccaccaacggctgcaactctaccgggccccattttaatcctcacaataagtcccat
ggggcaccatctgatgatgaaagacatgtgggcgacctgggaaacatagtagccaacaaa
gatggtgttgcagatatcttcataaaggacctacagatttcactaagcgggcctcattcc
atattgggaagggcagttgttgttcatgctgattctgatgacctaggaaggggtggtcat
gaactcagtaaaacaacaggaaatgcaggagcaagaattggatgcggtatcattggactt
cgatctgcagtttaa

KEGG   Oryza sativa japonica (Japanese rice): 4332846
Entry
4332846           CDS       T01015                                 
Symbol
SODCC.1, SodCc1
Name
(RefSeq) superoxide dismutase [Cu-Zn] 1 isoform X1
  KO
K04565  superoxide dismutase, Cu-Zn family [EC:1.15.1.1]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04146  Peroxisome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    4332846 (SODCC.1)
Enzymes [BR:osa01000]
 1. Oxidoreductases
  1.15  Acting on superoxide as acceptor
   1.15.1  Acting on superoxide as acceptor (only sub-subclass identified to date)
    1.15.1.1  superoxide dismutase
     4332846 (SODCC.1)
SSDB
Motif
Pfam: Sod_Cu
Other DBs
NCBI-GeneID: 4332846
NCBI-ProteinID: XP_015632608
UniProt: Q0DRV6
LinkDB
Position
3:join(13238407..13238482,13238575..13238676,13238801..13238896,13239151..13239182,13239331..13239406,13239868..13239921,13240035..13240057)
AA seq 152 aa
MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTG
PHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHA
DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
NT seq 459 nt   +upstreamnt  +downstreamnt
atggtgaaggctgttgttgtgcttggtagcagtgagattgttaagggcactatccacttt
gtccaagagggagatggtcccaccactgtgactggaagtgtctctggcctcaagcctggt
ctccatgggttccatattcatgcacttggtgacaccaccaatggttgcatgtcaactggg
ccacactacaatcctgccggaaaggagcatggagcaccagaagatgagacccgccatgct
ggtgatcttggaaatgtcaccgctggagaagatggtgttgctaatatccatgttgttgac
agtcagattccacttactggaccaaattcaatcattggcagagccgtcgttgtgcatgcc
gatcctgatgatcttggaaagggtgggcacgagctgagcaagaccaccggaaacgctggt
ggccgtgttgcttgcgggatcatcggacttcaaggctga

KEGG   Oryza sativa japonica (Japanese rice): 4338417
Entry
4338417           CDS       T01015                                 
Symbol
OsJ_18067, P0018A03, RMSOD1, sodA, sodAOs1
Name
(RefSeq) superoxide dismutase [Mn], mitochondrial
  KO
K04564  superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04146  Peroxisome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    4338417 (OsJ_18067)
Enzymes [BR:osa01000]
 1. Oxidoreductases
  1.15  Acting on superoxide as acceptor
   1.15.1  Acting on superoxide as acceptor (only sub-subclass identified to date)
    1.15.1.1  superoxide dismutase
     4338417 (OsJ_18067)
SSDB
Motif
Pfam: Sod_Fe_C Sod_Fe_N
Other DBs
NCBI-GeneID: 4338417
NCBI-ProteinID: NP_001389439
LinkDB
Position
5:join(15126963..15127257,15129359..15129405,15129514..15129639,15129736..15129792,15130557..15130634,15131288..15131380)
AA seq 231 aa
MALRTLASRKTLAAAALPLAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHH
ATYVANYNKALEQLDAAVAKGDAPAIVHLQSAIKFNGGGHVNHSIFWNNLKPISEGGGDP
PHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVT
KGANLVPLLGIDVWEHAYYLQYKNVRPDYLSNIWKVMNWKYAGEVYENATA
NT seq 696 nt   +upstreamnt  +downstreamnt
atggcgctccgcacgctggcctcgaggaaaaccctagccgccgcggcgctgccgctggct
gcggcggcggcggcgaggggtgtgacgaccgtcgcgctcccggacctcccctacgactac
ggcgcgctggagccggccatctccggggagatcatgcgcctgcaccaccagaagcaccac
gccacctacgtcgccaactacaacaaggccctcgagcagctcgacgccgccgtcgccaag
ggcgacgcccccgccatcgtgcacctccagagcgccatcaagttcaacggcggaggccat
gtcaatcattcgatcttctggaataacctcaagcctatcagcgagggtggtggtgatcca
ccacatgcaaaacttggctgggccattgatgaggattttggttcatttgaggcacttgta
aagaagatgagtgcagaaggtgctgctttacaaggatctggatgggtgtggctagctttg
gataaagaggcaaagaagctttcagtggaaacaactgctaaccaggaccctctggtaacg
aagggggccaacttggttcctttgttgggaattgatgtctgggagcatgcgtactacctg
cagtacaagaatgtcaggccagactacctgagcaacatctggaaggtgatgaactggaaa
tacgcaggggaggtgtacgaaaatgcgactgcttga

KEGG   Oryza sativa japonica (Japanese rice): 4339922
Entry
4339922           CDS       T01015                                 
Symbol
OsJ_19901
Name
(RefSeq) superoxide dismutase [Fe] 1, chloroplastic
  KO
K04564  superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04146  Peroxisome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    4339922 (OsJ_19901)
Enzymes [BR:osa01000]
 1. Oxidoreductases
  1.15  Acting on superoxide as acceptor
   1.15.1  Acting on superoxide as acceptor (only sub-subclass identified to date)
    1.15.1.1  superoxide dismutase
     4339922 (OsJ_19901)
SSDB
Motif
Pfam: Sod_Fe_C Sod_Fe_N
Other DBs
NCBI-GeneID: 4339922
NCBI-ProteinID: NP_001407928
LinkDB
Position
6:complement(join(1021159..1021398,1021483..1021506,1021599..1021625,1021801..1021919,1022033..1022204,1022267..1022461,1022532..1022741,1023091..1023279))
AA seq 391 aa
MAFATLVGVGGLSPALFSPSRPLSCSSSTSVSAPFILRAGGGGDARRHGLRRLVTPLRGS
ACRGESTNSRVLQCANEANVVTEDDIVNDGIDDETASDAEMDEDAEANGDESSGTDEDAS
VSWIEQQPLPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLS
SFNEGREAPHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFM
DAASTQFGSGWVWLCYKTSKLPHVKSRSPIPSDNYGRLVISKSPNAINPLVWGHSPLLAI
DLWEHAYYLDYEDRRSDYVSTFLEKLVSWETVESRLKKAVQRAVERDEYVSTKHIRKQLL
ARAKSQIRAMPQQVNGDAREQTSGQEKSLGV
NT seq 1176 nt   +upstreamnt  +downstreamnt
atggcgttcgccacactggtgggagtgggaggcctatcgcctgccctcttctccccctcc
cgccccctctcctgctccagctccacctccgtctcggccccgttcatcctccgcgccggc
ggcggcggcgacgcccggcggcatggcctccgacgcctcgtcaccccactgagagggagc
gcctgcaggggagagagtacgaactcacgtgtactccagtgtgccaatgaggctaatgtg
gtgaccgaggatgacattgtgaacgatggtatcgatgatgaaaccgcttccgatgctgaa
atggatgaggatgctgaagcaaatggtgatgagtcgtcaggcactgatgaagatgcttct
gtctcctggatagagcagcagcctcttccttatccttcagatgccctagagccatacatc
agcaaggagacggtggaacagcactggggagttcatcagaacattcacgtcgagaggctc
aatggcatgattggtggcagtgagtgggaggggatgtcgctggggcagatgatgctatcc
tccttcaatgagggcagggaggcaccccatccccccttcttccatgctgcacagatatgg
aaccatgatttctattggcgatctatgcaacctggtggcgggggaaaacccccagaacgc
cttttgaaatttatcaacagggactttggatcctatgatggcatgattcgacaatttatg
gatgctgcatcaactcaatttggttctggatgggtttggctttgttacaaaacaagcaag
ttgcctcatgtgaaatcaagaagcccaatcccatctgataattatggtagactggtcatc
tcaaagtctccgaatgccatcaatcctcttgtctggggtcactctccactccttgcaatt
gatctttgggagcatgcatactacctggattatgaggatcggagatctgactatgtctcc
acatttctagagaagcttgtgtcatgggaaactgttgagtccaggcttaagaaggccgta
caacgggcagtagaaagagatgaatatgttagcacaaagcatataaggaagcaactttta
gctcgggcaaagagccaaatcagagctatgcctcagcaggtcaatggggatgcaagagag
cagaccagcggtcaagagaagtccctaggggtgtga

KEGG   Oryza sativa japonica (Japanese rice): 4340091
Entry
4340091           CDS       T01015                                 
Name
(RefSeq) superoxide dismutase [Fe] 2, chloroplastic isoform X1
  KO
K04564  superoxide dismutase, Fe-Mn family [EC:1.15.1.1]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04146  Peroxisome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    4340091
Enzymes [BR:osa01000]
 1. Oxidoreductases
  1.15  Acting on superoxide as acceptor
   1.15.1  Acting on superoxide as acceptor (only sub-subclass identified to date)
    1.15.1.1  superoxide dismutase
     4340091
SSDB
Motif
Pfam: Sod_Fe_C Sod_Fe_N DUF6725 EHN
Other DBs
NCBI-GeneID: 4340091
NCBI-ProteinID: XP_015642496
UniProt: Q5VSB7
LinkDB
Position
6:join(2414464..2414535,2415396..2415479,2415577..2415765,2415946..2416117,2416267..2416340,2416434..2416460,2416531..2416554,2416656..2416781)
AA seq 255 aa
MAAFASALRVLPSPPAAVPRRLRSREQRQGCRSRRYSKVVAYYALTTPPYKLDALEPYIS
KRTVELHWGKHQQDYVDSLNKQLATSMFYGYTLEELIKEAYNNGNPLPEYNNAAQVWNHH
FFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLLGSGWVWLVLKRKERKF
SVVHTQNAISPLALGDIPLINLDLWEHAYYLDYKDDRRMYVTNFIDHLVSWDTVTLRMMR
AEAFVNLGEPNIPVA
NT seq 768 nt   +upstreamnt  +downstreamnt
atggcggctttcgcctccgctctccgcgttctcccctcgccgccggctgcggtgcctcgt
cggcttcgctcgagagaacaaaggcagggctgtagatctcgaaggtattcaaaagtcgtg
gcttactacgctctcactactccgccgtataaacttgatgccctggaaccttatattagc
aagaggacagttgaacttcactggggtaagcatcagcaagactatgtggatagcttgaat
aagcagcttgctaccagcatgttctatgggtacactctggaggaactaataaaagaagca
tacaacaacggcaacccattaccagaatataataatgcagcacaggtatggaaccatcac
ttcttctgggaatcaatgcagccagaaggtggtgggtcaccagggcgaggtgtcctgcag
cagatagagaaggattttggctcttttactaattttagggaagagtttatacgctcagca
ttatcacttttggggtctggctgggtttggcttgtcttgaagagaaaagaacgaaaattt
tcggtagtccatacacaaaatgccatcagtccacttgcacttggtgatattccactcatc
aatctagacttgtgggagcatgcttactacttggattacaaggatgacaggcgaatgtat
gttacaaactttatcgaccatcttgtctcttgggatactgtcactctacgcatgatgcgc
gctgaggcttttgtgaaccttggtgaaccaaatatcccagttgcatga

KEGG   Oryza sativa japonica (Japanese rice): 4344210
Entry
4344210           CDS       T01015                                 
Symbol
SODCC.2, SodCc2
Name
(RefSeq) superoxide dismutase [Cu-Zn] 2
  KO
K04565  superoxide dismutase, Cu-Zn family [EC:1.15.1.1]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04146  Peroxisome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    4344210 (SODCC.2)
Enzymes [BR:osa01000]
 1. Oxidoreductases
  1.15  Acting on superoxide as acceptor
   1.15.1  Acting on superoxide as acceptor (only sub-subclass identified to date)
    1.15.1.1  superoxide dismutase
     4344210 (SODCC.2)
SSDB
Motif
Pfam: Sod_Cu
Other DBs
NCBI-GeneID: 4344210
NCBI-ProteinID: NP_001390163
LinkDB
Position
7:complement(join(28303594..28303616,28303753..28303806,28303943..28304018,28304125..28304156,28304319..28304414,28304503..28304604,28304689..28304764))
AA seq 152 aa
MVKAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG
PHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHA
DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
NT seq 459 nt   +upstreamnt  +downstreamnt
atggtgaaggctgttgctgtgcttgctagcagtgagggtgtcaagggcaccatctttttc
tcccaagagggagatggtccgacctctgtgacgggaagtgtctctgggctcaagccaggg
ctccatggattccatgtgcacgcgctcggtgacaccactaatggctgcatgtcaactgga
ccacacttcaatcctactgggaaggaacatggggcaccacaagatgagaaccgccatgcc
ggtgatcttggaaatataacagctggagcagatggtgttgctaatgtcaatgtctctgac
agccagatcccccttactggagcacactccatcattggccgagctgttgttgtccatgct
gatcctgatgatcttggcaagggtggacatgagcttagcaagaccactggaaatgctggg
ggccgagttgcttgcggaatcatcggactccagggttag

KEGG   Oryza sativa japonica (Japanese rice): 4346329
Entry
4346329           CDS       T01015                                 
Symbol
P0543D10.3, sodCp
Name
(RefSeq) superoxide dismutase [Cu-Zn], chloroplastic
  KO
K04565  superoxide dismutase, Cu-Zn family [EC:1.15.1.1]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04146  Peroxisome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    4346329 (P0543D10.3)
Enzymes [BR:osa01000]
 1. Oxidoreductases
  1.15  Acting on superoxide as acceptor
   1.15.1  Acting on superoxide as acceptor (only sub-subclass identified to date)
    1.15.1.1  superoxide dismutase
     4346329 (P0543D10.3)
SSDB
Motif
Pfam: Sod_Cu SEEK1 DUF7382
Other DBs
NCBI-GeneID: 4346329
NCBI-ProteinID: NP_001390634
LinkDB
Position
8:join(28280360..28280609,28281039..28281100,28281213..28281252,28281987..28282082,28282191..28282222,28282327..28282402,28282483..28282536,28282969..28282994)
AA seq 211 aa
MQAILAAAMAAQTLLFSATAPPASLFQSPSSARPFHSLRLAAGPAGAAAARALVVADATK
KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPH
FNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELE
DDLGKGGHELSLSTGNAGGRLACGVVGLTPL
NT seq 636 nt   +upstreamnt  +downstreamnt
atgcaagccatcctcgccgctgccatggccgcccagaccctcttgttctccgccaccgcc
cctcccgcctcccttttccagtccccttcctctgcccgccctttccactcgctccgcctc
gccgccggccccgcgggcgccgccgctgccagggcgctcgtcgtcgccgacgccaccaag
aaggccgtcgccgtgctcaagggcacctcccaggttgagggagtcgtcaccctcacccag
gatgaccaaggtcctacaacagtgaatgtccgtgtgacgggacttactcctggacttcac
ggcttccacctccacgagtttggcgatactacgaatgggtgcatatcaacaggaccacat
tttaacccaaacaatttgacgcacggtgcaccagaagatgaagtccgtcatgcgggtgac
ctgggaaacattgttgccaatgctgaaggtgtagctgaggcaaccattgttgataagcag
attcctctgagtggcccaaattctgttgttgggagagcattcgttgttcatgagcttgaa
gatgatttggggaagggtggccatgagcttagtctcagtactggaaatgctggtgggcga
cttgcatgcggtgttgttgggctgaccccgttgtag

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