Oryza sativa japonica (Japanese rice) (RefSeq): 4332988
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Entry
4332988 CDS
T01015
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4332988
09122 Translation
03013 Nucleocytoplasmic transport
4332988
03015 mRNA surveillance pathway
4332988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4332988
03041 Spliceosome [BR:
osa03041
]
4332988
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
4332988
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4332988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
4332988
NCBI-ProteinID:
XP_015631513
UniProt:
Q10KI0
LinkDB
All DBs
Position
3:complement(15214227..15219079)
Genome browser
AA seq
715 aa
AA seq
DB search
MSSYPVLNNRPIDQWRVTDLKDELRKRRLPVKGLKDELVRRLFESIQSEKEEEEEEQDNE
TVEVNPAANQASEIQSVSQETTVSITEVHKETVVQVTQEATPPITEVSQSLTVSAAEEPP
KVNAVATHEAPLSKAPTDKGEEPPIAGDVSTVENEHLHAENNTEPFVEKTQDVGTNEAIG
ALDMTSADVESDMTSSDIKIDATEASKVQQHDTVATTVDAIPTDADPMDTDVATEKAVLN
DLGDTTSVYDEERKDSELTNEDEKPIAPKPNDQVPEVSPDLGSPIKCESISSDDISTNKK
NNIKDNLNANNFDLELEAKPEMVKPSSGITSIGGDLQPLDDDKDLGKNQSSLEYIDSTAN
VDEGGSPEKLNLDRSSGDESMEEDVMEIKQVESNIKSEGTAELSSDHVKEVSLPDTVVDN
SSVDTKEVIADEKTAASTEKRKLEAEETVAATEPIKRQRRWAADGAKVPERQPISHSGSD
APKENFQPALKRSFGRSDSTASGDSPKERVVPPSQKPATASLRIDRFVRPFTLKAVQELL
GKTGSLCSFWMDHIKTHCYVTFSSVEEAVATRDAVYDLQWPPNNGNRLVAEFVDPQEVKL
KLEPPPPAAAPISPATTPKEPPFQQAQANQNMPRQAAAPREHLPPPPPLTTLPTSDSGSA
KERLPPTPKKQPEPPVVTLDDLFRKTHSSPRIYYLPLSEEEVAAKLASQGKGKRE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcataccctgtgctaaacaacagacctattgatcaatggagagttactgatctg
aaggatgaacttcgtaagaggaggctccctgttaaaggcttgaaagatgaacttgtaagg
cgactcttcgagtcaattcagagtgaaaaagaagaagaagaagaagaacaagataatgaa
actgtcgaagtgaatccagcagctaaccaggcatctgaaatacagagtgtttctcaggaa
actacagtttctattacagaagttcacaaggaaactgtggttcaagtaactcaggaagct
acacctcctatcactgaagtaagtcagtcgctcacagtttcagctgccgaagagcccccc
aaggttaacgcggtggcaacccatgaagctcccttaagcaaggccccaacagacaaagga
gaagagccaccaattgcaggagatgtttccacagtggaaaacgaacatcttcatgctgaa
aataatactgaaccttttgttgagaagacacaagatgttggcaccaacgaagcaattggt
gcccttgatatgaccagtgctgatgtagagtcagacatgacctcttctgatatcaagata
gatgctactgaagccagcaaagttcaacaacatgacacagtagcaacaactgtggatgcc
atcccaacagatgctgatcctatggatactgatgttgcaactgagaaggcggttcttaat
gatttgggtgacactacttcagtgtatgatgaagagcgcaaagattctgagctcacgaat
gaggacgagaagcccatcgcaccaaaaccaaatgatcaggtacctgaggttagcccagat
ttagggtctccaattaagtgtgagtcaatttctagcgatgatatatcaactaacaaaaag
aataatataaaggataatttgaatgctaataattttgatttagaactagaggctaagcca
gagatggtaaaaccatcttctggcattacttccataggtggagatttgcagccattggat
gatgacaaagatctgggtaaaaaccagtcatctttggaatacatagattccacagctaat
gtggatgaaggcggctctccagagaaactaaatttagacaggagttcaggtgatgagtca
atggaggaggatgtcatggagattaagcaagttgagtccaacattaaatctgaaggaaca
gctgagcttagctcagatcatgtgaaagaggtgtccctccctgatactgttgtggacaat
tcctctgttgacacgaaagaagttatagctgatgaaaagacagcagcttcaactgaaaag
aggaaactcgaagctgaagaaactgttgctgccactgagccaatcaaacgccagcgtcga
tgggctgcagatggtgccaaagttccagagagacaaccaataagtcatagtggctctgat
gctcctaaggaaaattttcagcctgctttaaaacgatcttttggcaggtctgattcaaca
gctagtggagattccccaaaggagcgggttgtgccaccatctcagaaacctgcaacagct
tccttgagaattgatcgatttgtaaggccatttacgctgaaggctgtgcaagaacttctt
ggtaaaactggatctctttgtagtttctggatggatcacatcaagacccactgctatgtt
acgttttcatcagtagaggaagctgtggctactcgggatgctgtctacgatttgcagtgg
ccaccaaacaacggcaatcgtttggttgctgaatttgttgatccccaggaagtgaagctc
aaacttgaacctcctccgccagcggcggctcctattagccctgctactacaccaaaggag
ccaccctttcaacaggctcaggctaatcaaaacatgcctcgtcaagccgctgcaccaagg
gagcacttgccacctccaccgcctcttactacgcttcctacatctgactcaggatcagca
aaggagaggcttccacccaccccaaagaaacagccggaacctcctgttgtgacactcgat
gatctcttcaggaagacacattcttctcctaggatttattaccttcctttatcagaagag
gaagtggcagccaagcttgcttcacagggcaaaggcaagagagaatga
Oryza sativa japonica (Japanese rice) (RefSeq): 4343967
Help
Entry
4343967 CDS
T01015
Name
(RefSeq) protein starmaker isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4343967
09122 Translation
03013 Nucleocytoplasmic transport
4343967
03015 mRNA surveillance pathway
4343967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4343967
03041 Spliceosome [BR:
osa03041
]
4343967
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
4343967
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4343967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
DUF1344
SAP_new25
Motif
Other DBs
NCBI-GeneID:
4343967
NCBI-ProteinID:
XP_015644674
UniProt:
B9FUB8
LinkDB
All DBs
Position
7:25931612..25936542
Genome browser
AA seq
906 aa
AA seq
DB search
MSTCPVLNDRPIDEWKVTELKDELRRRDLSIKGLKDDLVKRLAEALQGEVIDGGEETVNG
TPPVENQTQDGALVLDDASGFQASAEQNVDEGPAEVAAKNEGLVSVIEASTEGGTLVLDD
GSGFQASTEQNVDEGPAEVAAKNEGLASVTEASTEDGTLVLADASGIQASTEQNVDEGPS
EVAAKNEGLVSVTEASKDSAIATTEVSQEAVVAAAEVSPEALVAVTEVSEAPLVDVAGTN
ENSLGDAEATKEGDPESVPSDSNVVKEVCSHAEIHCEVIAEKTPDNGSSKKMTVDDISSD
DTSTNTKLEESSAKGEPCVSIGCEILEQETKSSHLDVILSHADAVASAEEMITESLILKK
DSNENDLMYEKDQKDSDHISTDCKPEQSGPKDQVSEVNQDLESQIKCVSISPDDILVNKN
DNVEGNMNADNFDLGLESKQDIVKPSSSNPSSVGDDLQTPDDDKEISLIDMSLQDTDMSL
KKKEGSPDSIYPEKLNLDRSSGDESMEEDAMETKHMDSKTIPDYLEGKSEVTLEHVSSGD
ESMEEDVMETKHVDSNTKVEHVSSGDESMEEDVMETKHVDSNTKPDYLEGKNDVTLEHVV
KEVILLDTVTEGSSVDQKEAISQEKPVMPTEKRKAEDQEVVANNEPIKRQRLWNVDDVKP
EQATSKLSGSDASKVVHPPARRRSFGRSDSTARGNSPKERMVPPPQKPATTSLRIDRFVR
PFTLKAVQELLGKTGSVCSFWMDPIKTHCYVTFSSVEEALATRNAVYNLQWPPNNGSSLV
AEFVDPHEVKAKLEPPPPPPAPINPTAATAPSHQSKANQIMPPHAADTSRGLLPTPPALA
RLPTFNNAPAREMLPPAPKNPEPPVVVTLDDLFRKTQASPRIYYMPVSEEVVSAKLAARG
KGKKAA
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgtgtcctgtgctgaatgaccgaccaattgatgagtggaaggttactgaattg
aaggatgagctccgtaggagggatctatctattaaaggtttgaaggatgatcttgtgaag
aggcttgctgaggcccttcagggggaggttattgatggcggggaagaaacagtcaatgga
actccccctgtggagaatcagacacaagacggagctcttgttttagatgatgcatctggt
ttccaggcttcagcagaacaaaatgttgatgaaggccctgctgaggttgctgcaaagaat
gaaggccttgtctctgttatagaagctagtacagagggcggaactcttgttttagatgat
ggatctggtttccaggcttcaacggaacaaaatgttgatgaaggtcctgctgaggttgct
gcaaagaatgaaggccttgcctctgttacagaagctagtacagaggacggaactcttgtt
ttagctgatgcatctggtatccaggcttcaacggaacaaaatgttgatgaaggtccttct
gaggttgctgcaaagaatgaaggccttgtctctgttacagaagctagtaaagatagtgca
attgctactacagaagttagtcaggaagcagttgttgccgctgcagaggttagtccggag
gctctagttgctgttacagaggtcagtgaggcccctctagttgatgtggccggaactaat
gaaaattctctaggtgatgcagaagcaactaaagaaggtgatccagaatctgttccaagt
gacagtaatgtggtgaaggaagtatgttcacatgctgaaattcattgtgaggtcattgca
gagaagactccagacaatggcagcagcaagaaaatgactgttgatgacatatcatctgat
gataccagtactaataccaagttggaggaatcatctgctaaaggtgaaccatgtgtcagt
ataggctgtgagattctagaacaggaaacgaaatcatcacatcttgatgttattttgtca
catgctgacgctgttgcaagtgcagaggaaatgattacagagagcctgattcttaagaaa
gattccaatgagaatgatttaatgtatgagaaggaccaaaaggattctgaccacataagc
actgactgcaaacccgagcagtctggaccaaaggatcaggtatctgaagtcaaccaagat
ctagagtctcaaattaagtgtgtgtcaatttctcctgatgatatactagtcaataaaaac
gacaatgtagaaggcaacatgaacgctgacaattttgatttaggactagagtctaagcag
gatattgtcaagccatcatccagcaatccctcctccgttggtgatgatttgcagacacca
gatgatgacaaagagatatctctgatcgacatgtctctgcaagatactgatatgagcttg
aaaaagaaagaaggcagtcctgatagtatttatcctgaaaaactaaatttggataggagt
tcaggagatgaatcaatggaggaggatgcgatggaaactaagcacatggattccaaaaca
atacctgattatctcgaaggaaagagtgaggtcaccttagagcatgtgagttcaggagat
gaatcaatggaggaggatgtgatggaaactaagcacgtggattccaatacaaaagttgaa
catgtgagttcaggagatgaatcaatggaggaggatgtgatggaaactaagcacgtggat
tccaatacaaaacctgattatctcgaaggaaagaatgatgtcaccttagagcatgtggta
aaagaggtgatcctccttgatactgtcactgagggttcatctgtagatcaaaaggaagct
ataagtcaagagaagccagtaatgccgactgaaaagaggaaagctgaagatcaagaagtt
gttgcaaataatgagccaatcaaacgtcagcgcctatggaatgtggatgatgtcaaacct
gagcaagcaacttccaaactaagtggttctgatgcttctaaagttgtacacccgcctgct
cgaagacgttcttttggcaggtctgattcaacagcacgtggaaattctccgaaggagagg
atggtaccaccgcctcagaaacctgcaacaacttccttgagaatcgatcgatttgtgcgc
ccgttcactttgaaagctgtgcaagagcttcttggtaaaactggatctgtttgtagcttt
tggatggatcctatcaagactcattgctatgtcacattctcttcggtggaggaagctctg
gctaccaggaatgctgtttacaatctccaatggcctccaaacaatggcagttccttagtt
gctgaattcgttgatccacatgaggtgaaggccaaacttgaaccccctcccccacctcca
gcacctatcaaccccacagcagctacagcaccttcccaccaatccaaggccaaccaaatc
atgcctcctcatgctgctgatacatcaagggggctattacccacaccaccagcacttgct
aggcttccaaccttcaacaacgcaccagcgagggagatgcttccgcccgctccaaagaac
ccagaaccacctgtggtggtgactcttgatgatctctttaggaagacacaggcctctccg
aggatctactacatgcctgtttcagaagaggtggtatctgccaagcttgcagcacgcggc
aaagggaagaaggcagcgtag
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