Oryza sativa japonica (Japanese rice) (RefSeq): 4333866
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Entry
4333866 CDS
T01015
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
3.6.4.13
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4333866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4333866
Enzymes [BR:
osa01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
4333866
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
4333866
Complex C
U5 SnRNP specific factors
4333866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
4333866
NCBI-ProteinID:
XP_015631547
UniProt:
Q53RK8
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All DBs
Position
3:complement(28567076..28571315)
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AA seq
736 aa
AA seq
DB search
MKRAADGMEKPKFLTREEREKLALERRQAAVTDQRRSALDLLQSLPRPPPPPPPPLSNPP
RDSSSSHHRDSSDRDRDRDRDRDRDRDRDRDRERRRDDDSRRDRDRDRDRDRGDSSRRDR
DRERGDRDRDRDRERGDRDRERGDREKDRLEKMAEREREKELDAIKEQYLGSKKPKKRVI
KPSEKFRFSFDWENTEDTSRDMNSLYQSPHEARLLYGRGFLAGIDRREQKKVAAAHEKET
RAEQRRKAGLDDRPEDDAVDKKEADAAAKYDAFDMRVDRHWTQKSLDEMTERDWRIFRED
FNISYKGSKVPRPMRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAE
TGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGI
KVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDM
GFEPQVVGVLDAMPSSNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVV
VTIGTAGKATDLITQNVIMTKESEKMSRLQKILTDLGDKPAIVFCNTKKSADARAKDLDK
AGFRVTTLHGGKSQEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSID
TYTHRIGRTGRAGKKGLATSFLTLENTDIFFDLKQMLIQSNSPVPPELARHEASKFKPGS
VPDRPPRRNDTVYATH
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcgccgccgacgggatggagaagcccaagttcctcacgcgggaggagcgggag
aagctggcgctcgagcgccgccaggccgccgtcaccgaccagcgccgctccgccctcgac
ctgctccagtcgctcccccgcccccctccgccgccgccgcctcccctttccaacccccct
cgcgactcctcctcctcccaccaccgcgactcctccgaccgtgaccgtgaccgtgaccgg
gaccgggatcgggacagggaccgggaccgtgaccgggagcgccgccgcgacgacgactcc
cgccgcgaccgagatcgggatcgggaccgcgaccgaggcgactcctcccgccgcgaccgc
gacagggagcgcggtgaccgcgaccgcgaccgtgaccgggagcgcggggacagggacagg
gagcgaggggacagggagaaagatcggctggagaagatggcggagagggagcgggagaag
gagctggacgcgatcaaggagcagtacctgggttccaagaagcccaagaagcgggtcatc
aagccgtctgagaagttccgcttctcgttcgactgggagaacacggaggacaccagccgc
gacatgaactcgctctaccagtcgccccacgaggcccgcctgctctacggccggggattc
ctggctggcattgatcgccgcgagcagaagaaggtggccgccgcgcatgagaaggagacc
cgtgccgagcagcggcgcaaggccggtctggatgaccgccctgaggacgacgcagttgat
aagaaggaggctgatgctgcagcgaagtatgatgccttcgacatgcgcgtggacaggcac
tggactcagaagtctcttgatgagatgacggagcgggattggcgtatattccgtgaggac
ttcaatatatcctataagggttctaaggtaccccgtcccatgcggaagtggtctgagagc
aagcttggtactgagctgcttcgtgctgtcgagaaagctgggtacaaggaaccttcgccg
attcagatggcttccattccacttggtctccagcagcgtgatgttattggtattgctgaa
acaggctctggcaagactgctgcttttgtgctccctatgctttcgtacattacccgcctc
ccacccataagtgaggaaaatgaggctgagggtccttatgctgttgttatggcacctact
cgtgagcttgctcaacagattgaggaagagactgtgaaatttgcgacctatcttggcatt
aaggttgtgtctatcgttggtggtcaatccattgaagagcagggttttaagattaggcag
ggctgtgaggttgttattgcaactcctggtcggcttcttgattgcttggagaggaggtat
gctgtgctcaaccagtgcaactatgtggttctggatgaggctgataggatgattgatatg
ggcttcgagccgcaggttgttggagtccttgatgctatgccatcgagtaacttgaaacct
gagaatgaggatgaggagcttgatgcaaaaacgatctataggactacctatatgttcagc
gccactatgccacctgctgtggagcggcttgctaggaagtacctgcggaacccagtcgtt
gtcacaattggtacagctggcaaggccacagatctcatcacacagaacgtgatcatgacg
aaggagtcagagaagatgtcaaggctccagaagatactcacagatcttggggataagcca
gccattgtgttctgcaacacaaagaaatcagcagatgctcgtgcgaaggatctagacaag
gcaggcttccgcgtcacaacactacatggtgggaagtcacaggagcagagagagacgagc
cttgatggatttagaaaccggcggttcactgttcttgtggcaactgatgttgccgggcgt
ggtattgatattcccgatgttgctcatgtcatcaactatgagatgcctagttcaatcgat
acatacacacatcgtattggaagaactggacgtgcaggaaagaagggattggcaacttcg
tttttaactctggagaacactgacattttctttgatctgaaacagatgcttatacagagc
aacagtcctgtgccacctgaacttgcaaggcatgaagcatccaaatttaagccaggctca
gttcctgatagacctccaagacgaaatgacacagtctatgcaactcactga
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