KEGG   Oryza sativa japonica (Japanese rice): 4334040
Entry
4334040           CDS       T01015                                 
Symbol
CYCH-1, CYCH1-1, cycH1, OsJ_12494
Name
(RefSeq) cyclin-H1-1
  KO
K06634  cyclin H
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03022  Basal transcription factors
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    4334040 (CYCH-1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    4334040 (CYCH-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4334040 (CYCH-1)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4334040 (CYCH-1)
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     4334040 (CYCH-1)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     4334040 (CYCH-1)
SSDB
Motif
Pfam: Cyclin_C_2 Cyclin_N TFIIB RB_B
Other DBs
NCBI-GeneID: 4334040
NCBI-ProteinID: NP_001405638
LinkDB
Position
3:join(31118708..31118767,31118877..31118927,31119023..31119095,31119327..31119445,31119528..31119601,31119793..31119913,31119994..31120062,31120227..31120268,31121087..31121164,31122136..31122194,31122272..31122356,31122655..31122743,31122833..31122895,31122971..31122980)
AA seq 330 aa
MADFRTSTHRERWIFQTNDLMDRWGAANQRATETLVQYGTTRLKVDPVDGSLSYPEPAPD
HVVGSSGVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEH
HPKHIMLTCIYSSCKVEENHVSAEELGKGIQQDHQIILNNEMIVLKSLDFDLIVYAPYRS
IEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQLALAALHKSND
MHKILNFERYLESVFSRQHSDCPIEQFVGSINMINYLVEQLKIPTPKDMRHIDRKLKHCL
DPSSQDEHKKKEKKSKHKSKRAANEAQLDS
NT seq 993 nt   +upstreamnt  +downstreamnt
atggcggatttccggacctccacgcatcgggagaggtggatcttccagacgaacgatctg
atggatagatggggggcggcgaaccagcgggccacggagacgctcgttcagtatggaacg
acgcggttgaaggtggaccctgttgatgggtcgctgtcgtacccggaacctgcgcctgat
catgttgtagggagctcaggtgtaaagcctctgtcttgtgaagaggagcgattgatgcgg
gtattttatgagcaaaagattcaagaagtatgttcagcatttaagttccctcacaaaatc
caggctaccgcaataatatatttcaagagattttatctgcaatggtctgtaatggaacat
cacccaaagcatattatgttaacttgtatttattcttcttgcaaagtggaagaaaatcat
gtttctgctgaggaacttggtaaaggaattcaacaggaccaccagattattctaaataac
gagatgattgttctcaaatctttagattttgatctgattgtttatgctccgtatcgatct
atcgaaggatttgttgatgacatggaggatttctgcagagcaggtaatggtgagcaccaa
cggttgcaggatttacgtcaaactgcgatatctcaggttgacaaaatgatgttgactgac
gctcctcttctctacactcctggacagttggctctggctgctttgcacaaatccaatgat
atgcacaagatccttaattttgaaaggtacttggaaagtgttttttcaaggcaacattct
gattgtccaatcgaacaatttgttgggtcaatcaatatgatcaattatttggttgagcag
cttaaaatacctactcctaaggacatgaggcatattgaccgcaagcttaagcattgtttg
gatccaagctcacaggatgagcataagaagaaagagaagaagtcgaagcacaaatcaaaa
agggcagctaatgaagcccaacttgacagctag

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