KEGG   Oryza sativa japonica (Japanese rice): 4334509
Entry
4334509           CDS       T01015                                 
Name
(RefSeq) calreticulin-2 isoform X2
  KO
K08057  calreticulin
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04141  Protein processing in endoplasmic reticulum
osa04145  Phagosome
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    4334509
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    4334509
   04148 Efferocytosis
    4334509
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03110 Chaperones and folding catalysts [BR:osa03110]
    4334509
  09183 Protein families: signaling and cellular processes
   04091 Lectins [BR:osa04091]
    4334509
Chaperones and folding catalysts [BR:osa03110]
 Other chaperones and cochaperones
  Calnexin / calreticulin
   4334509
Lectins [BR:osa04091]
 Calnexin / calreticulin
  4334509
SSDB
Motif
Pfam: Calreticulin
Other DBs
NCBI-GeneID: 4334509
NCBI-ProteinID: XP_015632354
UniProt: B9F6V5
LinkDB
Position
3:complement(join(34717026..34717049,34717243..34717443,34717651..34717753,34717842..34718034,34718123..34718230,34718483..34718678))
AA seq 274 aa
MLRSEKTEDEKNLIVPLTLLDCFQQCYADEEDYSDLLTLRIDHFAPVHFLSGTGIAIVEI
KCLAKDGWEDRWVKSEWKKEDNTVGEWNHTAGKWNGDTNNKGIQTSEDYRFYAISAEYPE
FSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETPYSIMFGPDICGYATKK
VHAILTKGVFEEKEIEKIGKPKNGNNHLIKKDVPCETDQLTHVYTLIIRPDAKYSILIDN
TEKRTGSIYGDCDNLPPKKKKDPEAKKVDVMGKD
NT seq 825 nt   +upstreamnt  +downstreamnt
atgctaagatcagagaagacagaggacgaaaagaatttaatagtaccactcactttgctc
gattgcttccaacaatgttatgccgatgaggaggattatagtgacttgctcactttgaga
attgaccattttgcccctgtacatttcctgtctggaactggtatagctatagttgagata
aagtgtttagctaaagatggatgggaggatcggtgggtcaaatctgagtggaagaaggag
gacaacacagtcggcgagtggaaccacacggccggcaagtggaacggcgacaccaacaac
aagggtatccagacatcagaggactacagattctacgccatttcggccgagtaccctgag
ttcagcaacaaggacaagaccctcgtgctgcagttctcggtgaagcacgagcagaagctc
gactgcggcggcggctacgtgaaattgcttggcggcgatgttgaccagaagaagtttggt
ggcgagacaccgtacagcatcatgtttggaccagatatctgcgggtatgccaccaagaag
gttcacgctatccttactaagggtgtgtttgaggagaaggagatagagaagattgggaag
cctaagaacggcaataaccatctgatcaagaaggacgtgccatgcgagaccgatcaactg
acacacgtctacaccttgatcatccgtcctgacgccaaatacagcattctgattgataac
actgagaagcgaactggaagcatctatggtgattgtgataatcttcctccaaagaagaag
aaggatcctgaagccaagaaggttgatgtgatgggaaaggactga

KEGG   Oryza sativa japonica (Japanese rice): 4334675
Entry
4334675           CDS       T01015                                 
Name
(RefSeq) calreticulin-like
  KO
K08057  calreticulin
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04141  Protein processing in endoplasmic reticulum
osa04145  Phagosome
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    4334675
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    4334675
   04148 Efferocytosis
    4334675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03110 Chaperones and folding catalysts [BR:osa03110]
    4334675
  09183 Protein families: signaling and cellular processes
   04091 Lectins [BR:osa04091]
    4334675
Chaperones and folding catalysts [BR:osa03110]
 Other chaperones and cochaperones
  Calnexin / calreticulin
   4334675
Lectins [BR:osa04091]
 Calnexin / calreticulin
  4334675
SSDB
Motif
Pfam: Calreticulin HA2_C
Other DBs
NCBI-GeneID: 4334675
NCBI-ProteinID: XP_015628738
UniProt: Q7Y140 Q0DM25
LinkDB
Position
3:complement(join(35925244..35925402,35925477..35925521,35925666..35925713,35925803..35925898,35925979..35926046,35926145..35926202,35926295..35926381,35926516..35926563,35926872..35926928,35927037..35927295,35927389..35927581,35927680..35927787,35928397..35928499))
AA seq 442 aa
MAIPRRSAAAVAAVVALASVAAVAGEVFFQEKFDDGWEDRWVKSEWKKDDNRAGEWNHTS
GKWYGDADDKGIQTSEDYRFYAISAKYPEFSSKDKTLVLQFSVKHEQKLDCGGGYVKLLG
GDVDQKKFGGETPYSIMFGPDICGYATKKVHAILTKNGKNHLIKKDVPCKTDQLTHVYTL
IIRPDAKYSILIDNTEKQTGSIYDDWNIIPPKNKRDPEAKKPEDWDDNEYIPDPEDKKPE
GYDDIPKEITDPEATKPEDWDDEEDGEWTAPTIPNPEYKGPWNQKKLKNPNYKGKWKAPL
IPNPDYKDDPYIYAFDSLNHIGIELWQVKSGTLFDNILITDDPEYAKKFAEETWAKHKDA
EKAAFDEAEKKRLEEESANSKIDDSDDDASDDEDEADDDKADVVAEQTKDKGDEKPQDIK
VSADEKPKSSKDDSSAAKKDEL
NT seq 1329 nt   +upstreamnt  +downstreamnt
atggcgatccccagaaggtcggcggccgccgtcgctgccgtggtggcgctcgcgtccgtg
gccgctgtcgccggcgaggtcttcttccaggagaagttcgacgatggatgggaggatcgg
tgggtcaaatctgagtggaagaaggatgacaacagggccggcgaatggaaccacacctcc
ggcaagtggtacggcgacgccgacgacaagggtatccagacgtcagaggactacagattc
tacgccatttcggccaagtaccctgagttcagcagcaaggacaagaccctcgtgctgcag
ttctcggtgaagcacgagcagaagctcgactgcggcggcggctacgtgaaattgctcggt
ggcgacgttgaccagaagaagtttggtggcgagacgccgtacagcatcatgtttggacca
gatatctgcgggtatgccaccaagaaggttcacgctatccttacaaagaacggcaagaac
catctaatcaagaaggacgtgccatgcaagaccgatcaactgacgcacgtctacaccttg
atcatccgtcctgacgccaaatacagcattctgatcgataacactgagaagcaaactgga
agcatctatgatgattggaacattattcctccaaagaataagagggatcctgaagccaag
aagccagaagactgggacgacaatgaatacattcctgatcctgaggacaagaagcctgag
ggctatgatgatatccctaaggaaattactgacccagaagcaactaagcctgaggactgg
gatgatgaggaagatggagaatggacagctccaaccattccaaaccctgagtacaaggga
ccatggaaccaaaagaaacttaagaaccctaattacaagggcaaatggaaggcaccattg
atccccaacccagattacaaggatgatccttacatctacgcttttgatagtttgaaccac
attggcattgagctgtggcaggttaagtcgggaactttgtttgacaacattcttatcact
gatgaccctgagtatgccaagaaatttgcagaagaaacctgggccaagcataaagatgct
gagaaagccgcctttgatgaagctgagaagaagaggcttgaggaggaatctgcaaactct
aaaatcgacgacagcgacgacgacgctagtgatgatgaggatgaggcggacgatgacaag
gctgatgtcgttgctgagcagaccaaggacaagggtgatgagaaaccgcaggacatcaag
gtctctgctgatgagaagccaaagagcagcaaggatgattcttccgctgcgaagaaggac
gagctttag

KEGG   Oryza sativa japonica (Japanese rice): 4339262
Entry
4339262           CDS       T01015                                 
Name
(RefSeq) calreticulin-3
  KO
K08057  calreticulin
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04141  Protein processing in endoplasmic reticulum
osa04145  Phagosome
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    4339262
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    4339262
   04148 Efferocytosis
    4339262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03110 Chaperones and folding catalysts [BR:osa03110]
    4339262
  09183 Protein families: signaling and cellular processes
   04091 Lectins [BR:osa04091]
    4339262
Chaperones and folding catalysts [BR:osa03110]
 Other chaperones and cochaperones
  Calnexin / calreticulin
   4339262
Lectins [BR:osa04091]
 Calnexin / calreticulin
  4339262
SSDB
Motif
Pfam: Calreticulin CDC45
Other DBs
NCBI-GeneID: 4339262
NCBI-ProteinID: XP_015640799
LinkDB
Position
5:join(25171037..25171145,25171533..25171640,25171815..25172007,25172467..25172725,25172811..25172867,25172945..25172992,25173300..25173386,25173460..25173517,25173659..25173726,25173854..25173949,25174058..25174114,25174236..25174325,25174759..25174785,25174887..25174898)
AA seq 422 aa
MGRLRRGGVGLLRGAVVLASLLLVVSGEVIFEERFDDDWGSRWVKSDWKKSEGKAGTFKH
TAGSYSGDPDDRGIQTTSDAKHFAISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKL
MSGYVNQKKFGGDTPYSFMFGPDICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFY
TFILRPDASYSLLVDNREREFGSMYTDWDILPPRKIKESNAKKPKDWDDREYIEDPDEVK
PEGYDSIPKEIPDPKDKKPESWDDDDDGVWKPRMIPNPEYKGRWKRKKIKNPNYKGKWKI
PWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEYARSVVDEVRAANK
EAEKEAFEEAEKRRKAREDEEARRAREEGEKRRRDRDRHRGRDRYRDRYRGHHRRYDYHD
EL
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgggtcgcctccgccgcggcggggtcggtctcctgcgtggtgccgtggtgctcgcgtcc
cttctcctcgtcgtctccggcgaagtcatcttcgaggagcgattcgatgatgattgggga
agcagatgggtgaaatctgactggaaaaagagcgaagggaaagccgggacattcaaacat
acagcagggagctattctggagatcctgacgatagaggtatacaaacaacctcggatgct
aagcattttgctatatcggccaagttcccagaattcagtaacaagaaccggacattggtg
gttcagtattcgataaagattgagcaggatattgaatgtggtggtgcttatatcaagctt
atgtctggctatgtgaatcagaagaaatttggcggtgacactccttatagcttcatgttt
gggcctgatatatgtggtgatcagacaaagaaactccatctgatactgtcttaccaaggg
caaaactaccctataaagaaagatctgaaatgtgaaactgacaagttgacacatttttac
acattcattcttaggccagatgcctcttatagtctacttgttgataaccgggagagagaa
tttggtagtatgtacactgactgggacatcctccctcctcgcaagatcaaagaatctaat
gcgaagaagccaaaagattgggatgacagggaatatattgaagatcctgatgaagttaaa
ccagagggctatgactctattcctaaagagattcctgatccaaaggacaaaaagcctgag
tcatgggatgatgatgatgatggtgtatggaagcctagaatgataccgaatccagaatac
aagggacgttggaaacgcaagaaaattaagaaccctaactacaagggaaaatggaagatc
ccatggattgataatccagaatttgaggacgacccagacctatatgtgctgaaacctttg
cagtatgtgggaattgaggtttggcaggtgaaagctggttcagtttttgacaacattttg
atttgtgacgacccggagtatgcaagaagtgttgttgatgaagttagggctgcaaataaa
gaggctgaaaaggaggccttcgaggaggctgaaaagcggaggaaggctagagaagacgag
gaggctcggcgtgcacgagaggaaggagagaaacgaagaagagacagggatcggcaccga
ggcagggaccgttacagggatagatatagaggtcatcatcgtaggtatgactaccatgac
gagctatga

KEGG   Oryza sativa japonica (Japanese rice): 4342826
Entry
4342826           CDS       T01015                                 
Symbol
CRO1, CRT1, pp56
Name
(RefSeq) calreticulin precursor
  KO
K08057  calreticulin
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04141  Protein processing in endoplasmic reticulum
osa04145  Phagosome
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    4342826 (CRO1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    4342826 (CRO1)
   04148 Efferocytosis
    4342826 (CRO1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03110 Chaperones and folding catalysts [BR:osa03110]
    4342826 (CRO1)
  09183 Protein families: signaling and cellular processes
   04091 Lectins [BR:osa04091]
    4342826 (CRO1)
Chaperones and folding catalysts [BR:osa03110]
 Other chaperones and cochaperones
  Calnexin / calreticulin
   4342826 (CRO1)
Lectins [BR:osa04091]
 Calnexin / calreticulin
  4342826 (CRO1)
SSDB
Motif
Pfam: Calreticulin
Other DBs
NCBI-GeneID: 4342826
NCBI-ProteinID: NP_001389969
LinkDB
Position
7:join(8217210..8217324,8218364..8218471,8218546..8218738,8218824..8219082,8219164..8219220,8219446..8219493,8219584..8219670,8219756..8219813,8219904..8219971,8220079..8220174,8220257..8220304,8220671..8220709,8220795..8220881,8220980..8220991)
AA seq 424 aa
MAIRARSSSYAAAAVALALALASVAAVAGEVFFQEKFEDGWESRWVKSEWKKDENMAGEW
NHTSGKWNGDPEDKGIQTSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYV
KLLGGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSH
VYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPEAKKPEDWDDKEYIPDPED
KKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEWTAPTIPNPEYKGPWKQKKIKNPNYQGKW
KAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETWGK
HKDAEKAAFDEAEKKKEEEEAAKAGEDDDDLDDEDAEDEDKADEKADSDAEDGKDSDDEK
HDEL
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggcgatccgcgcgaggtcctcctcctacgccgccgcggcggtcgcgctggcgctcgcg
ctggcgtccgtcgccgctgtcgccggcgaggtcttcttccaggagaagttcgaagatgga
tgggaaagtcggtgggtcaagtcagaatggaagaaggatgagaacatggctggtgaatgg
aaccacacatctgggaagtggaatggagatcctgaggacaaaggtatccaaacctctgag
gactacaggttctacgctatttcagcggagtacccagaattcagcaacaaggataaaacc
ctggtgctgcagttctctgtaaagcatgagcaaaagcttgactgtggtggtggatatgtc
aagttgcttggtggtgatgttgaccagaagaaatttggtggggacacaccgtacagcatt
atgtttggaccagacatctgtgggtacagcaccaagaaggtccatactatctttactaag
aatgacaagaaccatttgatcaagaaggatgtcccctgcgagactgatcagctgtcccat
gtgtacactttgatcatccatcctgatgctacatacaccatacttattgacaatgttgag
aagcaatctggcagcatctacgagcactgggatattctgcctccgaagcaaatcaaggac
ccagaagctaagaagccagaggactgggatgacaaggagtacattcctgaccctgaggac
aagaagcctgagggatacgatgatattcccaaggaaatccctgaccctgatgctaagaag
cctgaggactgggatgatgaggaagatggtgagtggactgcaccaaccattcctaaccct
gagtacaagggaccatggaagcaaaagaaaatcaagaaccctaactaccaaggcaaatgg
aaggcaccgatgatcgacaacccagacttcaaggatgatccatacatctatgcttttgac
agcctgaagtacattggcattgagttgtggcaggtcaaatcaggtactctgtttgacaac
ttccttattactgacgaccctgagttggccaagacattcgcagaggagacatggggcaag
cacaaggatgctgagaaggctgcttttgacgaggcagagaaaaagaaggaagaggaggaa
gctgccaaggccggtgaggacgatgatgatttggatgacgaggatgctgaggatgaggac
aaggccgatgagaaggctgactctgatgcagaggatggcaaggattctgatgatgagaag
catgatgagctctaa

KEGG   Oryza sativa japonica (Japanese rice): 9267167
Entry
9267167           CDS       T01015                                 
Name
(RefSeq) calreticulin-3
  KO
K08057  calreticulin
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04141  Protein processing in endoplasmic reticulum
osa04145  Phagosome
osa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    9267167
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    9267167
   04148 Efferocytosis
    9267167
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03110 Chaperones and folding catalysts [BR:osa03110]
    9267167
  09183 Protein families: signaling and cellular processes
   04091 Lectins [BR:osa04091]
    9267167
Chaperones and folding catalysts [BR:osa03110]
 Other chaperones and cochaperones
  Calnexin / calreticulin
   9267167
Lectins [BR:osa04091]
 Calnexin / calreticulin
  9267167
SSDB
Motif
Pfam: Calreticulin
Other DBs
NCBI-GeneID: 9267167
NCBI-ProteinID: XP_015620841
LinkDB
Position
1:complement(join(39562395..39562406,39562488..39562520,39563042..39563134,39563214..39563270,39563353..39563448,39563542..39563609,39563734..39563791,39563877..39563963,39564240..39564287,39564365..39564421,39564505..39564763,39564971..39565163,39565296..39565403,39566154..39566322))
AA seq 445 aa
MLAALPSHRSSLVFSGEPPAMGSRSGGRHRLFLRFIALWSLLLIAAGEVIFEERFEDGWE
SRWVKSDWKRSEGKAGTFKHTAGRYSGDPDDKGIQTTLDARHFAISAKIPEFSNKGRTLV
LQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGPDICGTQTKKLHLILSYQG
QNYPIKKDLQCETDKLTHVYTFILRPDASYSILVDNRERESGSMYTDWDILPPRKIKDVH
AKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPDPKDKKPDTWDDDDDGIWKPRMIPNPAY
KGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNIL
ICDDPEYARKAAEETWGANREAEKEAFEEAEKERKAREDKEAERAREEGERRRRERGDRH
RGRDYKDRYKRRHRDHWDDDYHDEL
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgcttgcagctttaccgagccaccggagtagcctcgtcttctccggcgagccaccggcg
atgggaagtcgcagcggcggccgccaccgactcttcctccgattcatcgccctctggtcg
ctgctcctcatcgccgccggggaggtcatcttcgaggagcgcttcgaagatggttgggag
tcccgctgggtgaagtctgattggaaaaggagcgaagggaaagctggaacgttcaaacac
acggcaggaagatattctggagatcctgatgacaaaggtatacagacaacgttggacgcc
aggcattttgctatatcggccaagatccccgaattcagtaacaagggccgtacattggta
ctccagtattccataaagtttgagcaggatattgaatgtggtggtggatatattaaactt
atgtctggttatgtcaaccagaagaaatttagtggagacactccatacagcttaatgttt
gggccagatatatgcggaactcaaacgaagaagctccatcttatactttcttatcaaggg
cagaactaccctatcaagaaagatctgcaatgtgaaacagacaagttgacgcatgtttac
acattcatactaaggcctgatgcgtcctatagcatactagttgataaccgtgaaagagaa
tcagggagcatgtacactgactgggacatcctccctcctcgcaagattaaggatgttcat
gccaaaaagcctaaggattgggatgacagagaatatattgaggatccagatgcagttaaa
ccagagggctatgattctattccaaaggagattcctgatccaaaagacaaaaagcctgac
acgtgggatgatgatgatgatggcatatggaagcctagaatgataccaaatccagcatac
aagggaccatggaagcgcaagaaaatcaagaatcctaactacaagggtaaatggaagatc
ccatggattgataatccagagtttgaggatgatccagacctatatgtgctgaaacccttg
aaatatattggaattgaggtttggcaggtaaaggctggttcggtttttgacaacatcctc
atttgtgacgatccggaatatgcaagaaaagctgctgaggaaacatggggtgcaaacagg
gaggccgaaaaagaggcttttgaagaagctgagaaggagaggaaagctagagaggataag
gaagctgaacgagcaagggaggaaggagagcgacggaggagagagaggggtgatcggcac
cgtggcagggattacaaggacagatacaaaagacgtcatagggatcactgggatgatgac
taccatgatgagctttga

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