Oryza sativa japonica (Japanese rice): 4334528
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Entry
4334528 CDS
T01015
Symbol
OsY14b, RBM8, Y14, Y14B
Name
(RefSeq) rNA-binding protein Y14B
KO
K12876
RNA-binding protein 8A
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4334528 (OsY14b)
09122 Translation
03013 Nucleocytoplasmic transport
4334528 (OsY14b)
03015 mRNA surveillance pathway
4334528 (OsY14b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4334528 (OsY14b)
03041 Spliceosome [BR:
osa03041
]
4334528 (OsY14b)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
4334528 (OsY14b)
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4334528 (OsY14b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
4334528
NCBI-ProteinID:
NP_001405813
LinkDB
All DBs
Position
3:join(34867666..34867921,34869015..34869151,34870501..34870643,34872038..34872095)
Genome browser
AA seq
197 aa
AA seq
DB search
MAAAAEDVEFVDYDRDEEEEEDAMDEDDRGGGRGGRALPVPHIVSQGVMRSRGRLLGRST
SVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYNTFSDFGHVKDLH
LNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQLLTRTVYVDWAFSRGPIQKLTSTRP
LHRRSRTPPRRLAALTC
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggaggacgtggagttcgtcgactacgaccgcgacgaggaggaggag
gaggacgccatggacgaggacgatcggggcggtggccgcggcgggcgcgcgctacccgta
ccccacatcgtctcccagggcgtgatgcgctcgcgcggccgcctcctcggccgcagcacc
tccgtgctcgcctccaaccgcgaccgcttcgactccctcgccgatgccggcaaccccggc
cacggcccacagcgctctattgaaggatggatactactggtctctggagtcaaagaagac
gcggaagaagatgatctgtacaacactttcagtgattttggtcatgttaaggacctacat
ttaaatctggaacgccgcactggatatgccaagggatatgcattagttgaatatgaaagt
tttgaggaagcacaaactgcaatcaaagcaatgaatgggactcagctgttaacaaggact
gtctatgttgactgggcattcagcagaggtcctatacagaaactcaccagtacaaggcca
ttacatcggcgatctcggactccacctcgcaggcttgctgccttgacatgttga
Oryza sativa japonica (Japanese rice): 4337757
Help
Entry
4337757 CDS
T01015
Symbol
OsY14a, RBM8, Y14, Y14A
Name
(RefSeq) rNA-binding protein Y14A
KO
K12876
RNA-binding protein 8A
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4337757 (OsY14a)
09122 Translation
03013 Nucleocytoplasmic transport
4337757 (OsY14a)
03015 mRNA surveillance pathway
4337757 (OsY14a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4337757 (OsY14a)
03041 Spliceosome [BR:
osa03041
]
4337757 (OsY14a)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
4337757 (OsY14a)
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4337757 (OsY14a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
4337757
NCBI-ProteinID:
NP_001407086
LinkDB
All DBs
Position
5:join(2345578..2345866,2347056..2347192,2347489..2347634,2348290..2348332)
Genome browser
AA seq
204 aa
AA seq
DB search
MAAVTNADVEAVDFDPDDDDLMDEDAADPTPAPAPRLRSTIAGGGGGGGGGDDGQRKTKG
RGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHNI
FRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFSN
GPVKRRNIRKRSPRRSRSPPRRRY
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggtgaccaacgccgatgtggaggcggtcgacttcgaccccgatgacgacgac
ctcatggacgaggacgccgccgaccccacgccggcgcccgccccgcgcctccgctccacc
atcgcgggcggcggcggcggcggcggcggcggcgacgacgggcaacgcaagaccaagggc
cgcgggttccgcgacgacgccgcgccccgcgactcccgcttagccggcgccgggcgcgcc
tccgacttcgactccctcggctccgacggtggccctggccccgtccgatccattgaagga
tggattgtgctagtcactggggttcatgaagaagctcaggaagatgatcttcacaatatt
ttccgggactttgggcaggtcaagaacttgcatttgaatttggatcgccgaactggattc
gtgaagggatatgctcttattgagtatgaaactttcgaggaagctcaggctgcaataaaa
gcattggatggaactgagcttctaacacaaatcataagtgttgattgggcatttagtaat
ggccctgtcaagcgcaggaatattcggaagagatcaccaagacgctccagatccccaccg
aggagaagatactga
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integrated database retrieval system
