Oryza sativa japonica (Japanese rice): 4334824
Help
Entry
4334824 CDS
T01015
Symbol
oRrp46, RRP46
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4334824 (oRrp46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4334824 (oRrp46)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
4334824 (oRrp46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
4334824
NCBI-ProteinID:
NP_001405958
LinkDB
All DBs
Position
3:complement(join(36959056..36959159,36959268..36959397,36959725..36959792,36959855..36959927,36960417..36960437,36960773..36960873,36960968..36961187))
Genome browser
AA seq
238 aa
AA seq
DB search
MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA
SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI
NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS
KEPNQKEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGDV
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atggaggagagccgcgcggacgggcggaacccgaaccagctccgccccttctcctgcaca
cgcaaccctctcgaccgcgcccatggctccgcgcggtgggctcagggggacaccatcgtg
ctcgccgccgtgtacgggccaaagccgggaaccaggaagggggagaatcccgagaaggca
tccattgaggtcgtctggaagcccatgaccggccagattgggaagcaagagaaggagtat
gagatgacgctcaagaggacattgcagagcatttgcctgctcactgttcatccaaacacc
accacctctgtcattcttcaggttgtgggcaatgatggttctcttcttccatgtgcaatt
aatgcttgctgcgcagcccttgtttttgctggcatccccttgaaacatcttgcagttgca
attggttgtggagtactggaggatggtgaagtgattttggacacaaacaaagcagaagag
cagcaattgaaatcatttgctcatttggtgttccccaattcacgcaagtctgctagttca
aaagaaccaaaccagaaagaggaggattctgagagaggattgataacttccattacccat
ggagtgatgtccgaggaagattatttcagctgcatagagaggggccttgctgcatcgtca
cggatctcggattttatgaggacaacattgcagaagcaggcacctggagatgtctga
DBGET
integrated database retrieval system
