Oryza sativa japonica (Japanese rice): 4335330
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Entry
4335330 CDS
T01015
Name
(RefSeq) transketolase, chloroplastic isoform X1
KO
K00615
transketolase [EC:
2.2.1.1
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00030
Pentose phosphate pathway
osa00710
Carbon fixation by Calvin cycle
osa01100
Metabolic pathways
osa01110
Biosynthesis of secondary metabolites
osa01200
Carbon metabolism
osa01230
Biosynthesis of amino acids
Module
osa_M00004
Pentose phosphate pathway (Pentose phosphate cycle)
osa_M00007
Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
osa_M00165
Reductive pentose phosphate cycle (Calvin cycle)
osa_M00611
Oxygenic photosynthesis in plants and cyanobacteria
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00030 Pentose phosphate pathway
4335330
09102 Energy metabolism
00710 Carbon fixation by Calvin cycle
4335330
09109 Metabolism of terpenoids and polyketides
01051 Biosynthesis of ansamycins
4335330
Enzymes [BR:
osa01000
]
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.1 transketolase
4335330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transketolase_N
Transket_pyr
Transketolase_C_1
Transketolase_C
KfrA_N
XFP_C
Motif
Other DBs
NCBI-GeneID:
4335330
NCBI-ProteinID:
XP_015633388
UniProt:
A0A0P0W806
Q7XWP9
LinkDB
All DBs
Position
4:join(11260555..11260959,11262689..11262779,11262877..11262982,11263064..11263346,11263432..11263580,11264952..11265105,11265207..11266163)
Genome browser
AA seq
714 aa
AA seq
DB search
MATATQAPTSPAAASGRGSVLPLLRGRPSTRVRLAVGRRPQTALRAQPPGAAEVVEQSVN
TIRFLAVDSVEKAKSGHPGLPMGCAPLGHVLFDEFLRFNPKNPYWFDRDRFILSAGHGCM
LQYALLHLAGYDSVTMDDLKAFRQWGSRTPGHPENFETPGVEVTTGPLGQGFANAVGLAL
AEKHLAARFNKPDLKIVDHHTYVILGDGCQMEGVSNEASSLAGHWGLGKLIAFYDDNHIS
IDGSTGIAFTEDALARYEALGWHTIWVKNGNTGYDDIRAAIKEAKAVKDKPTLIKVTTTI
GYGSPNKANTYSVHGSALGTKEVEATKNNLSWHHEPFHVPDEVKRHWSHHIDEGASLEAE
WNKKIVEYEKKYRQEAAELKSIISGELPSGWDNSLPKYTPENPADATRNLSQQCLNALAK
AIPGFLGGSADLATSNMTLLKMFGDFQKDTPEERNIRFGVREHAMGAISNGIALHSPGLI
PYCATFFVFTDYMRAAIRLSALCGSRVIFVMTHDSIGLGEDGPTHQPVEQLFSLRAMPNI
LMLRPADGNETSGAYKIAVLNRQRPSVLALSRQKLQQLKGTSAEGVAKGGYIISDNSSGN
KPDIILIGTGSELEIVEKAADELRKDGKTVRVVSLVCWELFEEQSEKYKESVFPSEVTSR
ISVEAGVTFGWEKYIGEKGKAIGVDRFGSSAPAGKIYKELGLTVENVIATAKSL
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcgacgcaagctcccacctcgcccgccgccgcgtccgggcgtggctccgtt
ctccccctcctccgtggccgcccctccacccgcgtccgcctcgccgttggccggcgaccg
cagaccgccctccgcgcgcagccgccgggggcggcggaggtggtggagcagtcggtgaac
accatccggttcctcgccgtggactccgtggagaaggccaagtccggccacccgggactc
cccatggggtgcgcgccgctgggccacgtcctattcgacgagttcctccggttcaacccc
aagaacccctactggttcgaccgcgaccgcttcatcctctccgccggccatggatgcatg
ctccagtacgcactgcttcacctcgccggatacgacagcgtcacgatggatgatctgaaa
gctttccggcagtggggaagcagaactcctggtcacccagaaaacttcgaaacacctggt
gttgaagtcactactggtcctctggggcagggttttgcaaatgctgttggcctagcgctt
gctgagaaacatctagctgcccgtttcaataagcctgatttgaaaatcgtggatcatcac
acgtatgttatacttggggatggctgccaaatggaaggtgtgtcaaatgaggcatcctcc
cttgctggtcactggggtctcgggaaactaattgccttctacgatgacaatcatatatca
attgatggtagcacaggcattgctttcactgaagatgcacttgcccgatatgaggcacta
ggttggcatactatctgggtgaaaaatggtaacacagggtatgatgacatccgtgctgca
attaaggaagcaaaggcagtcaaagacaagccaactcttatcaaggtgactactactatt
ggttatggatccccaaacaaagcaaacacttatagtgttcatggtagcgctctaggtacc
aaagaagtagaggcaaccaaaaacaatctttcttggcatcatgaacctttccatgttcct
gatgaggtgaaaaggcactggagtcaccatattgatgagggtgcttctctggaagctgaa
tggaataaaaaaattgttgaatatgaaaagaaatatcgccaggaggctgctgagttaaag
agcataatttcaggagaactgccttccgggtgggacaattctcttccaaaatatactcct
gaaaatcctgctgatgctacaaggaacttatctcaacaatgcttgaatgctcttgctaaa
gcaatacctggatttcttggaggtagtgccgatctcgcaacatcaaatatgacattacta
aaaatgtttggtgattttcaaaaagacacacctgaagaaagaaacatccgttttggtgtg
agagagcatgcaatgggtgccatttccaacggcattgcattgcacagtcctggactaata
ccttactgtgcaacattctttgtgtttactgactatatgagagctgccattcgtctttcg
gccttatgtggatcaagggtgatctttgtaatgactcatgattcaattggccttggagaa
gatgggccaacacatcagcctgttgaacagttattcagcctccgcgccatgccaaacata
ctaatgcttcgacctgcagatggaaacgagacttctggagcttacaagattgcagttctt
aataggcaaaggccctctgtccttgccctttctaggcagaagcttcaacagctgaaagga
acatcagcggaaggcgttgccaagggaggatacattatttctgataattcatcaggaaac
aaaccagatatcattctcatcggcactggttctgaacttgagattgtagaaaaagccgca
gatgagctgaggaaagatgggaagactgtacgagtagtttcactggtttgctgggaattg
tttgaggagcagtcggagaaatacaaggagagtgtttttccaagtgaagtaacttctagg
atcagcgtcgaggctggggtcacatttggatgggagaaatatatcggagaaaaaggtaaa
gctattggtgttgaccgttttggttctagtgcgcctgctgggaaaatatacaaggagctt
ggtttgacagtggaaaatgtcattgcaacggccaagtcactgtga
Oryza sativa japonica (Japanese rice): 4340025
Help
Entry
4340025 CDS
T01015
Name
(RefSeq) transketolase, chloroplastic
KO
K00615
transketolase [EC:
2.2.1.1
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa00030
Pentose phosphate pathway
osa00710
Carbon fixation by Calvin cycle
osa01100
Metabolic pathways
osa01110
Biosynthesis of secondary metabolites
osa01200
Carbon metabolism
osa01230
Biosynthesis of amino acids
Module
osa_M00004
Pentose phosphate pathway (Pentose phosphate cycle)
osa_M00007
Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
osa_M00165
Reductive pentose phosphate cycle (Calvin cycle)
osa_M00611
Oxygenic photosynthesis in plants and cyanobacteria
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00030 Pentose phosphate pathway
4340025
09102 Energy metabolism
00710 Carbon fixation by Calvin cycle
4340025
09109 Metabolism of terpenoids and polyketides
01051 Biosynthesis of ansamycins
4340025
Enzymes [BR:
osa01000
]
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.1 transketolase
4340025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transketolase_N
Transket_pyr
Transketolase_C_1
Transketolase_C
E1_dh
Motif
Other DBs
NCBI-GeneID:
4340025
NCBI-ProteinID:
XP_015643207
UniProt:
Q84ZY2
LinkDB
All DBs
Position
6:complement(join(1966487..1967443,1967530..1967683,1967772..1967920,1967999..1968281,1968371..1968476,1968577..1968667,1969063..1969554))
Genome browser
AA seq
743 aa
AA seq
DB search
MAAHSVAAAHATIAARAGAAAPAPAPPERLGFRLSALAGRGLRSPLPPRRGAPSASASRR
RHNNRVRAAAVETLEGQAATGALLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHIL
YDEVMRYNPKNPYWFNRDRFILSAGHGCMLQYALLHLAGYDAVLEEDLKQFRQWGSKTPG
HPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYCILGDGCQM
EGISNEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTEDVSARFEALGWHTIWVKNGN
DGYDEIRAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHGSALGTKEVEATRENLG
WPYEPFFVPEDVKSHWSRHVPQGAAFEADWNAKFAEYEKKYPEDAATLKSIVSGELPAGW
ADALPKYTPESPADATRNLSQQCLNALAKVVPGLLGGSADLASSNMTLLKMFGDFQKDTP
EERNVRFGVREHGMGAICNGIALHSPGLIPYCATFFVFTDYMRAAMRISALCEAGVIYVM
THDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADGNETAGAYKIAVLNRKRPSVLALS
RQKLAQLPGTSIEGVEKGGYIVSDNSTGNKPDFIVMSTGSELEIVAKAADELRKEGKTVR
VVSFVCWELFDEQSAEYKESVLPEAVTARVSLEAGSTLGWQKYVGSKGKAIGIDKFGASA
PAGKIYQEYGITAENVIATAKSL
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcactccgtcgccgccgcgcacgccaccatcgccgcgcgcgcgggtgccgcc
gcgccagcgcccgcgccgccggagcgcctcgggttccgcctcagcgcgctcgccggccgc
ggcctccgctccccgctcccgcctcgccgcggcgcgccatcggcgtccgcgtcgcgccgc
cgccacaacaaccgcgtgcgcgcggcggcggtcgagacgctcgaggggcaggcggcgacg
ggggcgctgctcgagaagtcggtgaacacgatccggttcctcgccatcgacgccgtcgag
aaggccaactcggggcaccccggcctgcccatggggtgcgcgcccatggggcacatcctc
tacgacgaggtcatgcggtacaaccccaagaacccctactggttcaaccgcgaccgcttc
atcctctccgccggccacggctgcatgctccagtacgccctgctccacctcgccggctac
gacgccgtcttggaggaggacttgaagcaattcaggcaatggggaagcaagactccaggc
catcccgagaacttcgagacgcccggagttgaagttaccactggacctcttggtcagggt
attgcaaatgcagttgggctggcccttgctgagaagcacctggctgctcgtttcaacaag
cccgacagcgagattgttgatcactacacctactgtattttgggagatgggtgccagatg
gagggtatctccaatgaagcttgctcgttggctggccattggggtcttggcaagctgatt
gcattctatgatgacaaccacatttccattgacggagacacagagattgcattcactgag
gatgtgagtgctcgctttgaggctcttgggtggcatacaatctgggttaagaatggaaac
gatggctatgatgagattcgtgccgccattaaggaagcaaaggcggtaactgacaagcca
acactaatcaaggtgaccaccacaatcggttttggatcacccaacaaggccaactcatac
agcgtccacggaagtgctttgggtaccaaagaggttgaagcaaccagagagaaccttgga
tggccctatgagccattctttgtgcctgaggatgtgaagagccactggagccgccatgtg
cctcaaggtgctgcttttgaggctgactggaatgctaagttcgccgagtatgagaagaag
tacccagaagatgcagcgaccttgaagagcattgtctcaggggagttgcctgctggctgg
gctgacgctcttcctaaatacactccagagagccctgcagatgccaccaggaatctgtca
cagcagtgcttaaacgcacttgctaaagttgttcctggtcttcttggaggaagtgctgat
cttgcatcctccaacatgacattgcttaagatgttcggtgacttccagaaggatacgcct
gaggagcgcaatgtccgatttggagtcagggagcatggaatgggcgccatttgcaacggc
attgctctgcacagcccaggactcattccatactgtgctactttctttgttttcactgat
tacatgagagctgccatgaggatctcagccttgtgtgaagccggagttatctatgttatg
acccatgactctattggtcttggagaagatggtccaacccatcagcccattgagcacttg
gtgagcttccgtgcgatgcccaacattctgatgcttcgtcctgctgatggtaacgagact
gctggggcatacaaaatcgcggtcctcaacaggaagaggccatccgtccttgctctctcc
aggcaaaagcttgctcagctgcctggtacctcgattgagggtgttgagaagggtgggtac
atcgtctctgacaactcaactggcaacaagcctgacttcattgtgatgagcactggctct
gaactagagattgtcgccaaggctgctgatgagttgaggaaggaggggaagactgtccgt
gtcgtgtcatttgtttgctgggagcttttcgatgaacagtcggctgagtacaaggagagt
gttctccctgaggctgttactgcaagagtcagccttgaagcagggtctactcttggatgg
cagaagtacgtcggaagcaaaggcaaggctattggcatcgacaaattcggtgcaagtgct
cctgctggaaagatctaccaggagtatggcatcaccgcggagaacgtcatcgcaacagca
aagagcctgtaa
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integrated database retrieval system
